Cmc11g0300281 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0300281
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionSWIM-type domain-containing protein
LocationCMiso1.1chr11: 20642551 .. 20643722 (-)
RNA-Seq ExpressionCmc11g0300281
SyntenyCmc11g0300281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAGTCTACTGAGGCCTAGGATTCAATCTTTTATAATTACAAAGATACTCTCCATTAGATCAAAGTTATTTCGCAGGTCAACGTCTTCTTCTTTGCCCCAATTATAGAGATACACGATTAGATGTCTTCTTCTTCCTCACTGATAGCATTGTAGGTTTTATTCTGCATCTCTTTTTTGTGCAATTCTTTTTCCATTCTTCTTCTTTTATTTTTCTTTCAAACTCATGATCATTATCGTTGTTCTACAATCATTATTATTCTTCTTCATTATCCTTCTGCGATTGTTATCTTTATGTTTCTTTTTTATTCTACTCATTCTCTTATTCTTCTTCCTCGATGAATTCAAACATCATAATCATTGAAGTTTTATTCTTTTTTTTTAATGAATCGTGTGTAGAGATAGACAACGATAATAGACAAATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTTTGTGTATTACTTTGGTTATTATCACAAACTACATGAAATTTCTTTTGCAATGAAAACTCATTTGACTTCTTGGTCTAAGAACATAATATGAAAAGAACATTAAAAAGTCAAGAAAATTCTTGGTAAAAGATTTGCTTTTTTCCTTATTTTTATTGTTTATTGATAGCTCTTTGATTTTGACAAATAGATTATTATTTGTGTCTATTAAAGATAGACATAAATAACAGTTTATCTATGTATGTCTATCTCAAATAGACTTGAATACTACTTTATATCGATTACCTTTCTCTTATTTATCCATTAGGTTGATCCCATTAGCAAAACTGAATACAAGATAATGGATGAAAATGAATAGTTCATAGTGAAGATTGGGATTTTGTAGTTTTTAGAGAAAATTCGATAAACGTATGTGCTTGCTATCCTACAGATGCTTAATTTAGATACTTATTCTTATGTAGCTAAGTTTTATCATAGAGAAGCATCGTCAGCAACATACAATGGTTGTGTTCGACCTATTGGAGTTCATTTGAATTCGAGAGTTGAAGATGATGTCATGGAAATACATTACCTCCTATTGTTAAACATCAAGCTAGAAGACCTAGAGAGCAAAGAATTTCATTTGTAAGTAAATCTAAAAGTTTATCAAGATGTTCTAATTGTAACCGTAAAAGTCACAATAGTAGGGACTTGCAAAGTTGAACTAATGAATCAA

mRNA sequence

TACAGTCTACTGAGGCCTAGGATTCAATCTTTTATAATTACAAAGATACTCTCCATTAGATCAAAGTTATTTCGCAGGTCAACGTCTTCTTCTTTGCCCCAATTATAGAGATACACGATTAGATGTCTTCTTCTTCCTCACTGATAGCATTAGAAGCATCGTCAGCAACATACAATGGTTGTGTTCGACCTATTGGAGTTCATTTGAATTCGAGAGTTGAAGATGATGTCATGGAAATACATTACCTCCTATTGTTAAACATCAAGCTAGAAGACCTAGAGAGCAAAGAATTTCATTTGTAAGTAAATCTAAAAGTTTATCAAGATGTTCTAATTGTAACCGTAAAAGTCACAATAGTAGGGACTTGCAAAGTTGAACTAATGAATCAA

Coding sequence (CDS)

ATGTCTTCTTCTTCCTCACTGATAGCATTAGAAGCATCGTCAGCAACATACAATGGTTGTGTTCGACCTATTGGAGTTCATTTGAATTCGAGAGTTGAAGATGATGTCATGGAAATACATTACCTCCTATTGTTAAACATCAAGCTAGAAGACCTAGAGAGCAAAGAATTTCATTTGTAA

Protein sequence

MSSSSSLIALEASSATYNGCVRPIGVHLNSRVEDDVMEIHYLLLLNIKLEDLESKEFHL
Homology
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BLAST of Cmc11g0300281 vs. ExPASy TrEMBL
Match: A0A5A7V9D5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003560 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 11  EASSATYNGCVRPIGVHLNSRVEDDVMEIHYLLLLNIKLEDLESKEFHL 60
           E  SATYNGC +P+G H + RV D VM+I YL  LN +LED E+KEFHL
Sbjct: 236 ETLSATYNGC-QPVGSHFDWRVVDFVMKI-YLQSLNSRLEDQENKEFHL 282

The following BLAST results are available for this feature:
BLAST of Cmc11g0300281 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc11g0300281 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc11g0300281 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9D55.8e-0461.22SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Cmc11g0300281 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0300281.1Cmc11g0300281.1mRNA