Cmc11g0299551 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0299551
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr11: 19853294 .. 19853863 (+)
RNA-Seq Expression	Cmc11g0299551
Synteny	Cmc11g0299551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTTGTTAGCAATATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTGAGTATGTACCTCGTTATCTTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGTCGTTTGTAAAGCAAACCATGATGGTCACTTCATCGAATTATGCTGAAATTTTTGCAATTCATGATGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTATTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAACATATCTCACCAAAACTCTTCTATACGCATGACCTTAAAGAAAATGAAGACATCAGTGTTCAACAAATTTTTTGA

mRNA sequence

ATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTTGTTAGCAATATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTGAGTATGTACCTCGTTATCTTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGTCGTTTGTAAAGCAAACCATGATGGTCACTTCATCGAATTATGCTGAAATTTTTGCAATTCATGATGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTATTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAACATATCTCACCAAAACTCTTCTATACGCATGACCTTAAAGAAAATGAAGACATCAGTGTTCAACAAATTTTTTGA

Coding sequence (CDS)

ATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTTGTTAGCAATATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTGAGTATGTACCTCGTTATCTTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGTCGTTTGTAAAGCAAACCATGATGGTCACTTCATCGAATTATGCTGAAATTTTTGCAATTCATGATGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTATTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAACATATCTCACCAAAACTCTTCTATACGCATGACCTTAAAGAAAATGAAGACATCAGTGTTCAACAAATTTTTTGA

Protein sequence

MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWLRSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKENEDISVQQIF

Homology

[Close]

BLAST of Cmc11g0299551 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-92
Identity = 166/188 (88.30%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           MYLANNTRPDI FSVNLLA YS SPTKRHWNGV++V RYLRGTID+GLFYSNKSNFDLVG
Sbjct: 37  MYLANNTRPDIAFSVNLLARYSYSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVG 96

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           YADAG+LSDPHKARSQTGYLFTC GT ISW  VKQTM  TSSN+AEI AIH+ASRECVWL
Sbjct: 97  YADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 156

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
           RSMTH+IRETCGL FSKNLPTILFEDNTACI QIKGGYIKGDRTKHISPKLFYTHDL+EN
Sbjct: 157 RSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTKHISPKLFYTHDLEEN 216

Query: 181 EDISVQQI 189
            DISVQQI
Sbjct: 217 GDISVQQI 224

[Close]

BLAST of Cmc11g0299551 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 163/188 (86.70%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           M LANNTRPDI FSVNLLA YSSSPTKRHWNGV++V RYLRGTID+ LFYSNKSNFDLVG
Sbjct: 47  MCLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 106

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           YADAGYLSDP KARSQ GYLFT GGT ISW  VKQTM  TSSN+AEI AIH+ SRECVWL
Sbjct: 107 YADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWL 166

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
           RSMTHHIRETCGL FSKNLPTILFEDNTACIAQIKGGYIKGDRTKH+SPKLFYTH+L+EN
Sbjct: 167 RSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEEN 226

Query: 181 EDISVQQI 189
            DISVQQI
Sbjct: 227 GDISVQQI 234

[Close]

BLAST of Cmc11g0299551 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-79
Identity = 143/189 (75.66%), Postives = 166/189 (87.83%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
            MYLAN TRPDI+F+VNLLA +SSSPT+RHWNG++++ RYL+GTID+GLFYSNKS  +LVG
Sbjct: 937  MYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVG 996

Query: 61   YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
            YADAGYLSDPHKARSQTGYLFT GGT ISW   KQ++  TSSN+AEI AIH+ASRECVWL
Sbjct: 997  YADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHAEIIAIHEASRECVWL 1056

Query: 121  RSMTHHIRETCGLYFSK-NLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKE 180
            RSMTH+IR+ CGL   K N PTIL+EDN ACIAQ+KGGYIKGDRTKHISPK F+THDL++
Sbjct: 1057 RSMTHYIRKNCGLSSGKENPPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQK 1116

Query: 181  NEDISVQQI 189
            N +I VQQI
Sbjct: 1117 NSEIDVQQI 1125

[Close]

BLAST of Cmc11g0299551 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-79
Identity = 142/188 (75.53%), Postives = 159/188 (84.57%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
            MYLAN TRPDI FSVNLLA YSS+PT+RHW G++++ RYLRGTID+GLFYSN S   L+G
Sbjct: 986  MYLANCTRPDIAFSVNLLARYSSAPTQRHWKGIKHIFRYLRGTIDLGLFYSNGSASQLIG 1045

Query: 61   YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
            YADAGYLSDPHKARSQTGY+FTCGG  ISW  VKQT+  TSSN++EI AIH+ SRECVWL
Sbjct: 1046 YADAGYLSDPHKARSQTGYVFTCGGAAISWRSVKQTLTATSSNHSEIIAIHETSRECVWL 1105

Query: 121  RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
            RSM  HIRE CGL   K+ PTIL+EDN ACI QIKGGYIKGDRTKHISPK FYTHDL++N
Sbjct: 1106 RSMIQHIREKCGLSSIKDCPTILYEDNAACITQIKGGYIKGDRTKHISPKFFYTHDLQKN 1165

Query: 181  EDISVQQI 189
             DI VQQI
Sbjct: 1166 GDIDVQQI 1173

[Close]

BLAST of Cmc11g0299551 vs. NCBI nr
Match: ERM98543.1 (hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda])

HSP 1 Score: 304.7 bits (779), Expect = 5.6e-79
Identity = 141/188 (75.00%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           MYLAN TRPDI FSVNLLA +SS+PT RHW G++++ RYL+GTID GLFYSN     L+G
Sbjct: 59  MYLANCTRPDIAFSVNLLARFSSAPTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIG 118

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           YADAGYLSDPHKARSQTGYLFTCG T ISW   KQT++ TSSN+AEI AIH+ASRECVWL
Sbjct: 119 YADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAEILAIHEASRECVWL 178

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
           RSMT HIR TCGL  +K +PTIL+EDN ACIAQ+KGGYIKGDRTKHISPK F+TH+L+EN
Sbjct: 179 RSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHNLQEN 238

Query: 181 EDISVQQI 189
            DI VQQI
Sbjct: 239 GDIDVQQI 246

[Close]

BLAST of Cmc11g0299551 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-21
Identity = 62/191 (32.46%), Postives = 95/191 (49.74%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFD--L 60
            MY+   TRPD+T +VN+L+ YSS      W  ++ V RYL+GTID+ L +     F+  +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   VGYADAGYLSDPHKARSQTGYLFTC-GGTVISWSFVKQTMMVTSSNYAEIFAIHDASREC 120
            +GY D+ +       +S TGYLF      +I W+  +Q  +  SS  AE  A+ +A RE 
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  VWLRSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDL 180
            +WL+ +   I            P  ++EDN  CI+ I        R KHI  K  +  + 
Sbjct: 1309 LWLKFLLTSIN------IKLENPIKIYEDNQGCIS-IANNPSCHKRAKHIDIKYHFAREQ 1368

Query: 181  KENEDISVQQI 189
             +N  I ++ I
Sbjct: 1369 VQNNVICLEYI 1372

[Close]

BLAST of Cmc11g0299551 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-19
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
            MY    TRPDI  +V +++ +  +P K HW  V+++ RYLRGT    L +   S+  L G
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKG 1178

Query: 61   YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
            Y DA    D    +S TGYLFT  G  ISW    Q  +  S+  AE  A  +  +E +WL
Sbjct: 1179 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWL 1238

Query: 121  RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
            +     +    GL+  +    +++ D+ + I   K       RTKHI  +  +  ++ ++
Sbjct: 1239 KRFLQEL----GLHQKE---YVVYCDSQSAIDLSKNSMYHA-RTKHIDVRYHWIREMVDD 1297

Query: 181  EDISVQQI 189
            E + V +I
Sbjct: 1299 ESLKVLKI 1297

[Close]

BLAST of Cmc11g0299551 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-19
Identity = 48/128 (37.50%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           MYL   TRPD+  +V +L+ ++S P   HW  ++ V RYL+ T   GL ++      LVG
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           Y+DA +  D    RS +GYLF   G  +SW   KQ  +  SS   E  A+ +A++E VWL
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

Query: 121 RSMTHHIR 129
              T   +
Sbjct: 134 TVRTRRTK 141

[Close]

BLAST of Cmc11g0299551 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-18
Identity = 55/162 (33.95%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 7    TRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVGYADAGY 66
            TRPD++++VN L+ Y   PT  HWN ++ V RYL GT D G+F    +   L  Y+DA +
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300

Query: 67   LSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWLRSMTHH 126
              D     S  GY+   G   ISWS  KQ  +V SS  AE  ++ + S E  W+ S+   
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360

Query: 127  IRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHIS 169
            +    G+  S   P +++ DN      +    +   R KHI+
Sbjct: 1361 L----GIQLSH--PPVIYCDNVGA-TYLCANPVFHSRMKHIA 1395

[Close]

BLAST of Cmc11g0299551 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 50/162 (30.86%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 7    TRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVGYADAGY 66
            TRPDI+++VN L+ +   PT+ H   ++ + RYL GT + G+F    +   L  Y+DA +
Sbjct: 1258 TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADW 1317

Query: 67   LSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWLRSMTHH 126
              D     S  GY+   G   ISWS  KQ  +V SS  AE  ++ + S E  W+ S+   
Sbjct: 1318 AGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTE 1377

Query: 127  IRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHIS 169
            +    G+  ++  P +++ DN      +    +   R KHI+
Sbjct: 1378 L----GIRLTR--PPVIYCDNVGA-TYLCANPVFHSRMKHIA 1412

[Close]

BLAST of Cmc11g0299551 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 166/188 (88.30%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           MYLANNTRPDI FSVNLLA YS SPTKRHWNGV++V RYLRGTID+GLFYSNKSNFDLVG
Sbjct: 37  MYLANNTRPDIAFSVNLLARYSYSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVG 96

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           YADAG+LSDPHKARSQTGYLFTC GT ISW  VKQTM  TSSN+AEI AIH+ASRECVWL
Sbjct: 97  YADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 156

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
           RSMTH+IRETCGL FSKNLPTILFEDNTACI QIKGGYIKGDRTKHISPKLFYTHDL+EN
Sbjct: 157 RSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTKHISPKLFYTHDLEEN 216

Query: 181 EDISVQQI 189
            DISVQQI
Sbjct: 217 GDISVQQI 224

[Close]

BLAST of Cmc11g0299551 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.9e-90
Identity = 163/188 (86.70%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           M LANNTRPDI FSVNLLA YSSSPTKRHWNGV++V RYLRGTID+ LFYSNKSNFDLVG
Sbjct: 47  MCLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 106

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           YADAGYLSDP KARSQ GYLFT GGT ISW  VKQTM  TSSN+AEI AIH+ SRECVWL
Sbjct: 107 YADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWL 166

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
           RSMTHHIRETCGL FSKNLPTILFEDNTACIAQIKGGYIKGDRTKH+SPKLFYTH+L+EN
Sbjct: 167 RSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEEN 226

Query: 181 EDISVQQI 189
            DISVQQI
Sbjct: 227 GDISVQQI 234

[Close]

BLAST of Cmc11g0299551 vs. ExPASy TrEMBL
Match: A0A1U9WYE0 (Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.4e-80
Identity = 143/189 (75.66%), Postives = 166/189 (87.83%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
            MYLAN TRPDI+F+VNLLA +SSSPT+RHWNG++++ RYL+GTID+GLFYSNKS  +LVG
Sbjct: 937  MYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVG 996

Query: 61   YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
            YADAGYLSDPHKARSQTGYLFT GGT ISW   KQ++  TSSN+AEI AIH+ASRECVWL
Sbjct: 997  YADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHAEIIAIHEASRECVWL 1056

Query: 121  RSMTHHIRETCGLYFSK-NLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKE 180
            RSMTH+IR+ CGL   K N PTIL+EDN ACIAQ+KGGYIKGDRTKHISPK F+THDL++
Sbjct: 1057 RSMTHYIRKNCGLSSGKENPPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQK 1116

Query: 181  NEDISVQQI 189
            N +I VQQI
Sbjct: 1117 NSEIDVQQI 1125

[Close]

BLAST of Cmc11g0299551 vs. ExPASy TrEMBL
Match: A0A1U9WYD5 (Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 142/189 (75.13%), Postives = 165/189 (87.30%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
            MYLAN TRPDI+F+VNLLA +SSSPT+RHWNG++++ RYL+GTID+GLFYSNKS  +LVG
Sbjct: 937  MYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVG 996

Query: 61   YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
            YAD GYLSDPHKARSQTGYLFT GGT ISW   KQ++  TSSN+AEI AIH+ASRECVWL
Sbjct: 997  YADTGYLSDPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHAEIIAIHEASRECVWL 1056

Query: 121  RSMTHHIRETCGLYFSK-NLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKE 180
            RSMTH+IR+ CGL   K N PTIL+EDN ACIAQ+KGGYIKGDRTKHISPK F+THDL++
Sbjct: 1057 RSMTHYIRKNCGLSSGKENPPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQK 1116

Query: 181  NEDISVQQI 189
            N +I VQQI
Sbjct: 1117 NSEIDVQQI 1125

[Close]

BLAST of Cmc11g0299551 vs. ExPASy TrEMBL
Match: U5CXL6 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04311p00004950 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 141/188 (75.00%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           MYLAN TRPDI FSVNLLA +SS+PT RHW G++++ RYL+GTID GLFYSN     L+G
Sbjct: 59  MYLANCTRPDIAFSVNLLARFSSAPTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIG 118

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           YADAGYLSDPHKARSQTGYLFTCG T ISW   KQT++ TSSN+AEI AIH+ASRECVWL
Sbjct: 119 YADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAEILAIHEASRECVWL 178

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLKEN 180
           RSMT HIR TCGL  +K +PTIL+EDN ACIAQ+KGGYIKGDRTKHISPK F+TH+L+EN
Sbjct: 179 RSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHNLQEN 238

Query: 181 EDISVQQI 189
            DI VQQI
Sbjct: 239 GDIDVQQI 246

[Close]

BLAST of Cmc11g0299551 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-21
Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
           MYL   TR DI+F+VN L+ +S +P   H   V  +  Y++GT+  GLFYS+++   L  
Sbjct: 386 MYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 445

Query: 61  YADAGYLSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVWL 120
           ++DA + S     RS  GY    G ++ISW   KQ ++  SS  AE  A+  A+ E +WL
Sbjct: 446 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 505

Query: 121 RSMTHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHI 168
                 ++    L  SK  PT+LF DNTA I  I    +  +RTKHI
Sbjct: 506 AQFFRELQ----LPLSK--PTLLFCDNTAAI-HIATNAVFHERTKHI 544

[Close]

BLAST of Cmc11g0299551 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-11
Identity = 35/113 (30.97%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 7   TRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVGYADAGY 66
           TRPDI+++VN++      PT   ++ ++ V RY++GTI  GL+    S  ++  + D+ +
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDW 172

Query: 67  LSDPHKARSQTGYLFTCGGTVISWSFVKQTMMVTSSNYAEIFAIHDASRECVW 120
                  RS TG+    G  +ISWS  +Q  +  SS   E  A+   + E  W
Sbjct: 173 AGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0299551 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 1  MYLANNTRPDITFSVNLLAIYSSSPTKRHWNGVEYVPRYLRGTIDIGLFYSNKSNFDLVG 60
          MYL   TRPD+TF+VN L+ +SS+        V  V  Y++GT+  GLFYS  S+  L  
Sbjct: 1  MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 61 YADAGYLSDPHKARSQTGY 80
          +AD+ + S P   RS TG+
Sbjct: 61 FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc11g0299551 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21506.1	2.6e-92	88.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	1.2e-89	86.70	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
AQY61295.1	1.9e-79	75.66	Pol [Coffea arabica]	[more]
KAF7137709.1	1.9e-79	75.53	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
ERM98543.1	5.6e-79	75.00	hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]	[more]

BLAST of Cmc11g0299551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	3.3e-21	32.46	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.8e-19	31.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	5.2e-19	37.50	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	3.4e-18	33.95	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.0e-15	30.86	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0299551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD63	1.3e-92	88.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	5.9e-90	86.70	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
A0A1U9WYE0	9.4e-80	75.66	Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1	[more]
A0A1U9WYD5	2.7e-79	75.13	Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1	[more]
U5CXL6	2.7e-79	75.00	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s043...	[more]

BLAST of Cmc11g0299551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.3e-21	38.32	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.1e-11	30.97	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.0e-10	43.04	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..83
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 5..83
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 59..188 e-value: 7.54722E-35 score: 117.954

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0299551.1	Cmc11g0299551.1	mRNA