Cmc11g0299481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0299481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	THO complex subunit 4A-like
Location	CMiso1.1chr11: 19821548 .. 19827250 (+)
RNA-Seq Expression	Cmc11g0299481
Synteny	Cmc11g0299481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGTCGTAATTTTGAACAACGCGTATAAACTACGCGGTCTTCTTAGGTCTTTATATCGACTAAGAAAATCGGCCTCCATCGCCAAAGCTCTCTGCCCAAACCATTTCACCGTCGCGGAATCTCCCAAACCCTAACTTCCCTTTTTCTTCTTAGTCTTCTCTTTTCGATTACTTCCTTCACTGTTTTCGTCCAATTTCCCTTCAACCATGGCCGCTCCTTTGGACATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCGAGAGGACGCGGAAGAGGTTCTGGACCTGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGTATGGTTTCGAGTTTCTCGAGATTTTCGTCTATTTGTCTTGATTTAGCCCCTTTAATTCTGGATTAAGGTTTTGTTTTGAACGTTTTTTATTTGGTAAACGTTAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCATTGGGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTAGATTACGGTGTTTCTAACGAAGATATTAAGGTATTTATACTTCTTGTGGACGAGTGGAGTGAAAAGAGATTTCCTTTCTTGTTTGCTTTTGTTGACAGTCTGCGTGTTTGCAGGAGCTTTTTTCTGAAGTCGGTGATATGAAACGTCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGTATCTTACGAGGCCTGGCATAAGATACCGGTTCTTTTGCATTATCTATTTTTGGGCGAAGTTAATAAACTCTCTGTCTATAGGGAACAGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCCGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGTTAAACCCTATTATGTTTTCATGCCTAATCATTGAAATTAGAACATAGATTTGTTTATAATTGGGTGGAATAGTTTACTACATCAGCATAGTGCAACATAATATATCATGAATATTATATATAGCTGTTGAAAGTTTGGGATATCAATTGATTGATATTAGCTGTTTTCAGATTCTTGAGAGTCCGATTATAACTGCTGAAAGTTTTCTTCCCCTTGTTTTGGTGACCATTATTTCTGCTTATAAAGAATTTGTATTATGGCCTCCTCATTTGTTGTATTAGTGAACTTATGGTATATTTTAGGTGAAGTATGCTGTTGTATGTCTTCTTGGGGAAATTTGTCTCTGATACTGACAATTATGGCATATGAATTCGGACTTGAATCACTTTTTTACAGATTTGTACACGATAAAGATGGTCGGAGCCTTTTTTTTTTTTTCATTTTTAGTGTGTCCCCTTTATTCAAATCTCTTTATATTTTGAGCTCAGTTTATTTGGCTTTGTTTTACATTTGTTTTATATAATCAGCGATACCATCCTCTGAGCCATCCATATCATTGTGACATTCATTTTCTACGGAACAGGCAGCAAGGTAGGGGTGGTCCGCCATCACGCCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGACCACGATCTGTTCTCTGTATCACCACCATTGTCTAAACTTGGCAGAAAAGGGCTATAGTTTTTCCCTAAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGATTTTGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCAGTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTACTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGAATTGCTTGGAATAAAGCGCTGGCTGCTAATTATACAACAAATGAGTTGCGGTTCCCCATTGAGGTAGATGTCTATATTTTTGTGCTGCTAATTTCCATATGTTTCTCTCATGATTGTAACTAATGATGTTTCTCTTTTAATTTTTTTCAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACTCAGAGTTGGCTATAACGTGCTAAAAGATGAACAGTCTTCGTAGCTATGGATCCGACTCGAGTCGAATGAAATTAAGAAATTTCCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTACTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCGTTCAAATGTGTGCAACTTGGTGGTGGTATTCTACTGCTGTGCGTGTGGAGAGAATCCGCAGAGCAGTTTGCCGCAACTCAGAGGCCTGCATTTGAGGTAGCATACCATCACTGTTGAGGGACAGTCAAGTTTTTTTACTGCTCAAGTGCTAGTCTTGCAACATGATCTCTTTCATTAGACAATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTGTCTTCGGAATCATATTCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCGTGGGGATTGAGACGAATATGTTGGGGTAAGGAGCAATGCCATTGGATTTTCATATTATTCTTTTCATGACATAGTATCAATAGCGTAAATAGGTATGTTGATATCACTTTCTTCATATTTCCATCCTCCCCTCCAATTAAACTTGGGCCAGTTTTTGATTGTTTATTTGTACAAAGCTATAATGTGTATGTCAATATCGATTTACGGCTGAGTGTGGTTTATATAGATACTAGGATGTATAATGTTCTAATTTTTAGATTATTGCGTAGTTGGTCTGATTTTGCACGATGGAATCAAATGGTGTCAGTGCTAGGAAGACGGCAACTCTCATTTAGAAGCCTTTTTTTTTTTAATCTTTTTAGAAAAGAACAATACCAAACGATCAAACGTTGTTCTTTACACCAAGTCCTCATATTGGCCTTCGTATGTAAAGTTTAGGGTACTTTAAATCCTCTAAGTCGGTCTACATCCTATTTTGTTCTTGAATCTTGCATCTTATTCTATTTTTGTCCACTCCTGAAAGTTTTGTTGACTGATCTTCTGAAAAGCTTGATATTTGCTACCAAAACATTTAGTGAAATACCTTCTTGGTGTCTTAGCTTATTGGAATAGGTGCATCTGGTTAAGGGTCTTTGAAATGGTCTTGAAGGTTGTAAGAATAGGTTTAATAGGACCTTAAACCACTAAAAACAAACAGGAAATTGACGCGTTTAATAGATAATATAATGATATTAAACATAAATTTTTTCTTCTGTTTCTACACCATTCTATTCTCTTTTTTTTTCTTCATCTGCCTCTATCAAGTGTCATTTACCTCTATGTACCATTCTCACTATTGTAAAGCATCAATAATTGGGTGTCCTCTCTAGATGTTTCTCACTCAATTTTCTCAAGCATTTCGCGAAAGACTCCATTGATTAGACATTTTTATAAAAAGAATTGCGATTCTTCCCTTTTACTTACTGCGTTGGTTTTCCTTTAGGATTTTGTTTTTTTGAATGGGCTTTTTATACAATGAAACATATATTATTTTGTAGGGATTGTCACAATTTTTAATTTTCAGATAGTCTTCAGGATGTTAAATTGACGGAGGGAAGAATGTAGGAAGAAAATCTTCATCTGTAATTCATGTCGCTGTCTATCTACCTCCACATGGATTGGGGGACTTCTCCTGTTTGATGAAATTGAACCCAAAGTTAGAGCCATCTTGCTCCAGTACGTTGGATATCTGTGGTTAAATCTAGAGAATCCAATTCGAAGACTCCGTGAAATCCTAATCCTAATTAAGACTCAATTCTGAGGTGCAATTCACAGAATCCCTAAGCTAAGTAAAGTAGTCAATTCCTTATAGGAGTTGTAATTCTCGTACTTGAGGACGCGTCCGTCGGGGAAGATCTGATGACGGTGGGGAGGCAGCAGGGAAGGTTGGTGCGGCATAAAGTCATGTAAATTTACAGAATACCGTTTCTTGAGATTTAACCCAAGCACTTCAGAAATTTTACTCTTTAAGAAATACAGATTTAGTTGGAAGAAACCCAGAAAATAGAATCATGTAGAACTATTTGATACATAATCTGCTTGGACAAGGTTTTTTCGATTCAACGTGTCAGTTTTCTGTTCACTTTTAATGGTTTTGTTGGTTTGATAGCAGTTTTGTTGGAAGATGTACTCTAACCAATCGGTGCACTCCTCTAATTGAAAACAACCTAGATTCTTAAAGGATGCAATCTTATTTGGCATCTCTAGTGTGTATGTAAACTAGTTTACTATTTCGTTGAATAGTCAATATTAGTAAATGGAAACAAGAGCTTATTAATGTATGAGTTACAAAGCTCACTCTCTTTGTTTTTGTACAAGCAATTTCATAAAATCATCATAACATCAGTCAAAAAAGATGTTTGCACCTAAACGATACACAAAAACACTTTCTGAAATGAATATAATGTTGCTTGGTTTAAAAATTAACATAAATAATTAAATTTTTCATAAAACAGTGGACAGAGAAGTATATAAGAGGGGGAAGAGAGATCTTTATAAAGAGAGGAAGTGAAAACGATTGGTTTGCGTAGAAATGAAACAAAAGAGTCCCTTTTAACAAAACAATTTTATCGCAACCATTTAAGTCCTTGCTAAATCCCAATTATCTAAATTCAACTCTGTCAATCTGTTGGTGGTTTAACATAATTTCCAAGCAGGAACAGAATAGATATAGAAATCTGTCAACCCGAACATTGCTATAAAATTTCGTAGCTTGTGAAAGAAAGAGAAGATAACTTGGACATATTAAGAGGTCATAATTCTCTAATTCATTATCTCAAAAGTTTAAGAACAGACGAGCACAATATAAATCTATAAAACCAGTAACGCCTTGGAGAACCCAGTTCAACAGCCAAGATCTACAATCATTCTTGCAACCGAACGACAACTTAACCTCCAAAGCCATACAGAGTCCTCCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCCGTCACGGTCTTCCTCCTTGCATGCTCGGTGTAAGTAACAGCATCACGAATCACATTCTCAAGAAAGATCTTCAAAACCCCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGGATTGCAGGCTTTGTAATGCCCTGAATATTGTCTCTCAAAACCTTACGGTGACGCTTTGCTCCTCCCTTTCCCAATCCCTTACCTCCCTTTCCGCGGCCAGACATATTTCAGAGAAGATGGGTGATTCCGGGGGATGAAGAAGAATTGGGCCAATTGGAAAGTTCGAATTTTGTTGTGAAGATGAAGAAATGGGTGGGGGAAGAATATATATGTGTGATTGATTGAGGATAGAAATATGACGTCCGTTGGATCTTTTGTTGATCGACGGATGAAAAGGTCGATCCATGTGAAAGAAACGCGGATGGTGGTAAGGATTTTGAGAAGTGA

mRNA sequence

GGCGTCGTAATTTTGAACAACGCGTATAAACTACGCGGTCTTCTTAGGTCTTTATATCGACTAAGAAAATCGGCCTCCATCGCCAAAGCTCTCTGCCCAAACCATTTCACCGTCGCGGAATCTCCCAAACCCTAACTTCCCTTTTTCTTCTTAGTCTTCTCTTTTCGATTACTTCCTTCACTGTTTTCGTCCAATTTCCCTTCAACCATGGCCGCTCCTTTGGACATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCGAGAGGACGCGGAAGAGGTTCTGGACCTGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCATTGGGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTAGATTACGGTGTTTCTAACGAAGATATTAAGCTTTTTTCTGAAGTCGGTGATATGAAACGTCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACAGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCCGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCGCCATCACGCCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGACCACGATCTGTTCTCTGTATCACCACCATTGTCTAAACTTGGCAGAAAAGGGCTATAGTTTTTCCCTAAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGATTTTGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCAGTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTACTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGAATTGCTTGGAATAAAGCGCTGGCTGCTAATTATACAACAAATGAGTTGCGGTTCCCCATTGAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACTCAGAGTTGGCTATAACGTGCTAAAAGATGAACAGTCTTCGTAGCTATGGATCCGACTCGAGTCGAATGAAATTAAGAAATTTCCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTACTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCGTTCAAATGTGTGCAACTTGGTGGTGGTATTCTACTGCTGTGCGTGTGGAGAGAATCCGCAGAGCAGTTTGCCGCAACTCAGAGGCCTGCATTTGAGGTAGCATACCATCACTGTTGAGGGACAGTCAAGTTTTTTTACTGCTCAAGTGCTAGTCTTGCAACATGATCTCTTTCATTAGACAATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTGTCTTCGGAATCATATTCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCGTGGGGATTGAGACGAATATGTTGGGATAGTCTTCAGGATGTTAAATTGACGGAGGGAAGAATGTAGGAAGAAAATCTTCATCTGTAATTCATGTCGCTGTCTATCTACCTCCACATGGATTGGGGGACTTCTCCTGTTTGATGAAATTGAACCCAAAGTTAGAGCCATCTTGCTCCAGTACGTTGGATATCTGTGGTTAAATCTAGAGAATCCAATTCGAAGACTCCGTGAAATCCTAATCCTAATTAAGACTCAATTCTGAGGTGCAATTCACAGAATCCCTAAGCTAAGTAAAGTAGTCAATTCCTTATAGGAGTTGTAATTCTCGTACTTGAGGACGCGTCCGTCGGGGAAGATCTGATGACGGTGGGGAGGCAGCAGGGAAGGTTGGTGCGGCATAAAGTCATGTAAATTTACAGAATACCGTTTCTTGAGATTTAACCCAAGCACTTCAGAAATTTTACTCTTTAAGAAATACAGATTTAGTTGGAAGAAACCCAGAAAATAGAATCATGTAGAACTATTTGATACATAATCTGCTTGGACAAGGTTTTTTCGATTCAACGTGTCAGTTTTCTGTTCACTTTTAATGGTTTTGTTGGTTTGATAGCAGTTTTGTTGGAAGATGTACTCTAACCAATCGGTGCACTCCTCTAATTGAAAACAACCTAGATTCTTAAAGGATGCAATCTTATTTGGCATCTCTAGTGTGTATGTAAACTAGTTTACTATTTCGTTGAATAGTCAATATTAGTAAATGGAAACAAGAGCTTATTAATGTATGAGTTACAAAGCTCACTCTCTTTGTTTTTGTACAAGCAATTTCATAAAATCATCATAACATCAGTCAAAAAAGATGTTTGCACCTAAACGATACACAAAAACACTTTCTGAAATGAATATAATGTTGCTTGGTTTAAAAATTAACATAAATAATTAAATTTTTCATAAAACAGTGGACAGAGAAGTATATAAGAGGGGGAAGAGAGATCTTTATAAAGAGAGGAAGTGAAAACGATTGGTTTGCGTAGAAATGAAACAAAAGAGTCCCTTTTAACAAAACAATTTTATCGCAACCATTTAAGTCCTTGCTAAATCCCAATTATCTAAATTCAACTCTGTCAATCTGTTGGTGGTTTAACATAATTTCCAAGCAGGAACAGAATAGATATAGAAATCTGTCAACCCGAACATTGCTATAAAATTTCGTAGCTTGTGAAAGAAAGAGAAGATAACTTGGACATATTAAGAGGTCATAATTCTCTAATTCATTATCTCAAAAGTTTAAGAACAGACGAGCACAATATAAATCTATAAAACCAGTAACGCCTTGGAGAACCCAGTTCAACAGCCAAGATCTACAATCATTCTTGCAACCGAACGACAACTTAACCTCCAAAGCCATACAGAGTCCTCCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCCGTCACGGTCTTCCTCCTTGCATGCTCGGTGTAAGTAACAGCATCACGAATCACATTCTCAAGAAAGATCTTCAAAACCCCTCTGGTTTCTTCATAGATCAATCCACTGATACGCTTCACACCACCTCTACGAGCCAAACGGCGGATTGCAGGCTTTGTAATGCCCTGAATATTGTCTCTCAAAACCTTACGGTGACGCTTTGCTCCTCCCTTTCCCAATCCCTTACCTCCCTTTCCGCGGCCAGACATATTTCAGAGAAGATGGGTGATTCCGGGGGATGAAGAAGAATTGGGCCAATTGGAAAGTTCGAATTTTGTTGTGAAGATGAAGAAATGGGTGGGGGAAGAATATATATGTGTGATTGATTGAGGATAGAAATATGACGTCCGTTGGATCTTTTGTTGATCGACGGATGAAAAGGTCGATCCATGTGAAAGAAACGCGGATGGTGGTAAGGATTTTGAGAAGTGA

Coding sequence (CDS)

ATGGCCGCTCCTTTGGACATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCGAGAGGACGCGGAAGAGGTTCTGGACCTGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCATTGGGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTAGATTACGGTGTTTCTAACGAAGATATTAAGCTTTTTTCTGAAGTCGGTGATATGAAACGTCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACAGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCCGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCGCCATCACGCCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGGCGGGGAAGAGGCCCAAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKLFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Homology

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BLAST of Cmc11g0299481 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 1.4e-124
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cmc11g0299481 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 2.7e-123
Identity = 233/237 (98.31%), Postives = 234/237 (98.73%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
           SNGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cmc11g0299481 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 450.3 bits (1157), Expect = 1.0e-122
Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADP SGF GQGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cmc11g0299481 vs. NCBI nr
Match: KAA0061942.1 (THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa] >TYK23987.1 THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112
Identity = 214/217 (98.62%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKV 217
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEK+
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKL 217

[Close]

BLAST of Cmc11g0299481 vs. NCBI nr
Match: KAG7035419.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 407.9 bits (1047), Expect = 5.9e-110
Identity = 217/238 (91.18%), Postives = 221/238 (92.86%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 9   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 68

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMF D  +GF  Q GRAS+IQTGTKLYISNLDYGVSNEDIK LFSEVGDMKR+GIHYDK
Sbjct: 69  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 128

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 129 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 188

Query: 181 SNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 189 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 246

[Close]

BLAST of Cmc11g0299481 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.7e-67
Identity = 157/251 (62.55%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFIGQGGRASA-IQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIK LF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 237
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

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BLAST of Cmc11g0299481 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-59
Identity = 158/290 (54.48%), Postives = 180/290 (62.07%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFIGQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIK-LFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIK LFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNG-------APRRQQGRGGPPSRQR 235
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of Cmc11g0299481 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.7e-40
Identity = 125/293 (42.66%), Postives = 159/293 (54.27%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS-- 60
           M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETTWQHDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFS 120
                 +     WQ  +F D   G    G  AS ++ GT+L+++NLD GV+NEDI+ LFS
Sbjct: 61  INKPVRRVRSLPWQSGLFED---GLRAAG--ASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST 180
           E+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAV---------------------------------------GPTAAVN---PFENSNGA 234
            A                                        GP   V+   P  N  G 
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

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BLAST of Cmc11g0299481 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-39
Identity = 118/265 (44.53%), Postives = 150/265 (56.60%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFIGQGGRASAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F    SGF G  G    ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGFGGGAG----VETGGKLLVSNL 120

Query: 121 DYGVSNEDI-KLFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D+GVS+ DI +LF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGR----GGPPSRQRGRGFGRGRG 231
           +PM I++V + I T    P  +VN      G   R +G     GG  +R+  RG  RGRG
Sbjct: 181 RPMNIQLVTSQIDTQR-RPAQSVN-----RGGMTRNRGSGGFGGGGGTRRGTRGGSRGRG 240

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BLAST of Cmc11g0299481 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-39
Identity = 112/258 (43.41%), Postives = 145/258 (56.20%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  RA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFIGQGGRASAIQTGTKLYISNLD 120
            A        NR  PYS PK     WQHD+F    SGF G  G    ++TG KL +SNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF---DSGFGGGAG----VETGGKLLVSNLD 120

Query: 121 YGVSNEDI-KLFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGK 180
           +GVS+ DI +LF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGP 231
           PM I++V + I T    P  ++N    +        G GG     RG   GRGRG GR  
Sbjct: 181 PMNIQLVTSQIDTQR-RPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNS 240

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BLAST of Cmc11g0299481 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.0e-125
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cmc11g0299481 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 233/237 (98.31%), Postives = 234/237 (98.73%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
           SNGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cmc11g0299481 vs. ExPASy TrEMBL
Match: A0A5A7V158 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00510 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 6.1e-113
Identity = 214/217 (98.62%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK LFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKV 217
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEK+
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKL 217

[Close]

BLAST of Cmc11g0299481 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.9e-110
Identity = 217/238 (91.18%), Postives = 221/238 (92.86%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMF D  +GF  Q GRAS+IQTGTKLYISNLDYGVSNEDIK LFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of Cmc11g0299481 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.3e-110
Identity = 216/238 (90.76%), Postives = 220/238 (92.44%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHGIHYDK 120
           HDMF D  +GF  Q GRAS+IQTGTKLYISNLDYGVSNEDIK LFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237
            NG PRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGVPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of Cmc11g0299481 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-68
Identity = 157/251 (62.55%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFIGQGGRASA-IQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIK LF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 237
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of Cmc11g0299481 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.9 bits (655), Expect = 1.6e-68
Identity = 157/252 (62.30%), Postives = 188/252 (74.60%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFIGQGGRASA-IQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIK LF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP--RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDAD 237
           N   NSNGAP  R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 N--GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 240

[Close]

BLAST of Cmc11g0299481 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.1 bits (640), Expect = 8.6e-67
Identity = 156/251 (62.15%), Postives = 187/251 (74.50%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TTWQHDMFADPSSGFIGQGGRASA-IQTGTKLYISNLDYGVSNEDIK-LFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIK LF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 237
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of Cmc11g0299481 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-60
Identity = 158/290 (54.48%), Postives = 180/290 (62.07%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFIGQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIK-LFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIK LFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNG-------APRRQQGRGGPPSRQR 235
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Cmc11g0299481 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.8 bits (582), Expect = 4.6e-60
Identity = 157/288 (54.51%), Postives = 179/288 (62.15%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFIGQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIK-LFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIK LFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNGAPRRQ-----QGRGGPPSRQRGR 235
           EIVGTN+S PA+   A    PF          EN NG          +GRGG   R RG 
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

The following BLAST results are available for this feature:

BLAST of Cmc11g0299481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448384.1	1.4e-124	99.16	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
XP_004143092.1	2.7e-123	98.31	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
XP_038901991.1	1.0e-122	97.89	THO complex subunit 4A-like [Benincasa hispida]	[more]
KAA0061942.1	1.3e-112	98.62	THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa] >TYK23987.1 TH...	[more]
KAG7035419.1	5.9e-110	91.18	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cmc11g0299481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	1.7e-67	62.55	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	2.2e-59	54.48	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	8.7e-40	42.66	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q3T0I4	5.7e-39	44.53	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]
O08583	5.7e-39	43.41	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]

BLAST of Cmc11g0299481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK70	7.0e-125	99.16	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A0A0KBU2	1.3e-123	98.31	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A5A7V158	6.1e-113	98.62	THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1G721	2.9e-110	91.18	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]
A0A6J1L1M6	8.3e-110	90.76	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]

BLAST of Cmc11g0299481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	1.2e-68	62.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.6e-68	62.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	8.6e-67	62.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	1.6e-60	54.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	4.6e-60	54.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..157 e-value: 2.2E-11 score: 53.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..154 e-value: 8.4E-11 score: 41.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..161 score: 12.969665
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 160..236 e-value: 4.9E-11 score: 52.7
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 174..231 e-value: 5.7E-10 score: 39.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 74..218 e-value: 1.5E-21 score: 78.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..186
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..235
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..235
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 85..158 e-value: 1.38581E-44 score: 142.393
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0299481.1	Cmc11g0299481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding