Cmc11g0299051 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0299051
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 19285604 .. 19285909 (-)
RNA-Seq Expression	Cmc11g0299051
Synteny	Cmc11g0299051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCCTATGCTTCTGCTGTTAGAAGCCTGATGTATGTAATGTTATGTACTAGACCTCACATTTGCTATTCAGTAGGGATGGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATTTGATAAAGATGCTAGAAAGTCTACATCGAGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATAG

mRNA sequence

ATGAGTAACATTCCCTATGCTTCTGCTGTTAGAAGCCTGATGTATGTAATGTTATGTACTAGACCTCACATTTGCTATTCAGTAGGGATGGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATTTGATAAAGATGCTAGAAAGTCTACATCGAGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATAG

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCTTCTGCTGTTAGAAGCCTGATGTATGTAATGTTATGTACTAGACCTCACATTTGCTATTCAGTAGGGATGGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATTTGATAAAGATGCTAGAAAGTCTACATCGAGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATAG

Protein sequence

MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV

Homology

[Close]

BLAST of Cmc11g0299051 vs. NCBI nr
Match: KAA0061994.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 2.9e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 309 MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 368

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV
Sbjct: 369 LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 409

[Close]

BLAST of Cmc11g0299051 vs. NCBI nr
Match: KAA0062116.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 93/101 (92.08%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCTRP ICYSVG+V RYQSNPGRDHWT VKNILKYLRRTKDYM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLIL GYTDSDFQ DKDARKSTSRSVFTLNGGAVV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVV 119

[Close]

BLAST of Cmc11g0299051 vs. NCBI nr
Match: TYK04573.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCTRP+ICYSVG+VSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 818 MSNIPYASAVGSLMYAMLCTRPNICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 877

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILT YTDSDFQ DKD RKSTS SVFTLNGGAVV
Sbjct: 878 LVYGSKDLILTRYTDSDFQTDKDVRKSTSGSVFTLNGGAVV 918

[Close]

BLAST of Cmc11g0299051 vs. NCBI nr
Match: KAA0051985.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCTRP+ICYSVG+VSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 651 MSNIPYASAVGSLMYAMLCTRPNICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 710

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILT YTDSDFQ DKD RKSTS SVFTLNGGAVV
Sbjct: 711 LVYGSKDLILTRYTDSDFQTDKDVRKSTSGSVFTLNGGAVV 751

[Close]

BLAST of Cmc11g0299051 vs. NCBI nr
Match: KAA0063026.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           +SNIPYAS VRSLMY MLCTRP ICYS+G++SRYQSNPGRDHWT VKNILKYLRRTKDYM
Sbjct: 571 ISNIPYASTVRSLMYAMLCTRPDICYSIGIISRYQSNPGRDHWTTVKNILKYLRRTKDYM 630

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILTGYTDSDFQ DKD RKSTS SVFTLNGG VV
Sbjct: 631 LVYGSKDLILTGYTDSDFQTDKDGRKSTSGSVFTLNGGGVV 671

[Close]

BLAST of Cmc11g0299051 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-25
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1    MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
            M+ +PY+SAV SLMY M+CTRP I ++VG+VSR+  NPG++HW AVK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAV 101
            L +G  D IL GYTD+D   D D RKS++  +FT +GGA+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAI 1205

[Close]

BLAST of Cmc11g0299051 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.9e-18
Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           M N+PY SAV ++MY+M+ TRP +  +VG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDLI-LTGYTDSDFQFDKDARKSTSRSVFTLNGGAV 101
           L +       L GY+D+D+  D ++R+STS  +F LNGG V
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCV 101

[Close]

BLAST of Cmc11g0299051 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-11
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 3    NIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLV 62
            N P  S +  LMY+MLCTRP +  +V ++SRY S    + W  +K +L+YL+ T D  L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSKDLI----LTGYTDSDFQFDKDARKSTSRSVFTL 96
            +  K+L     + GY DSD+   +  RKST+  +F +
Sbjct: 1238 F-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKM 1273

[Close]

BLAST of Cmc11g0299051 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 6    YASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDY-MLVYG 65
            Y   V SL Y+   TRP + Y+V  +S+Y   P  DHW A+K +L+YL  T D+ + +  
Sbjct: 1228 YRGIVGSLQYLAF-TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDLILTGYTDSDFQFDKDARKSTS 90
               L L  Y+D+D+  D D   ST+
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTN 1311

[Close]

BLAST of Cmc11g0299051 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 6    YASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDY-MLVYG 65
            Y   V SL Y+   TRP I Y+V  +S++   P  +H  A+K IL+YL  T ++ + +  
Sbjct: 1245 YRGIVGSLQYLAF-TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDLILTGYTDSDFQFDKDARKSTS 90
               L L  Y+D+D+  DKD   ST+
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTN 1328

[Close]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL
Match: A0A5A7V3W4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002990 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 309 MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 368

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV
Sbjct: 369 LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 409

[Close]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL
Match: A0A5A7V6Q6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004720 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.2e-45
Identity = 93/101 (92.08%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCTRP ICYSVG+V RYQSNPGRDHWT VKNILKYLRRTKDYM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLIL GYTDSDFQ DKDARKSTSRSVFTLNGGAVV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVV 119

[Close]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL
Match: A0A5A7UE50 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004690 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCTRP+ICYSVG+VSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 651 MSNIPYASAVGSLMYAMLCTRPNICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 710

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILT YTDSDFQ DKD RKSTS SVFTLNGGAVV
Sbjct: 711 LVYGSKDLILTRYTDSDFQTDKDVRKSTSGSVFTLNGGAVV 751

[Close]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL
Match: A0A5D3BXV2 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002070 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCTRP+ICYSVG+VSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 818 MSNIPYASAVGSLMYAMLCTRPNICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 877

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           LVYGSKDLILT YTDSDFQ DKD RKSTS SVFTLNGGAVV
Sbjct: 878 LVYGSKDLILTRYTDSDFQTDKDVRKSTSGSVFTLNGGAVV 918

[Close]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL
Match: A0A5A7UW06 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00300 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.6e-44
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVRSLMYVMLCTRPHICYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60
           MSNIPYASAV SLMY MLCT P ICYSVG+VSRYQSNPGRDHWTAVKNILKYLRRTKDYM
Sbjct: 1   MSNIPYASAVGSLMYAMLCTIPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFQFDKDARKSTSRSVFTLNGGAVV 102
           L+YGSKDLILTGYTD DFQ DKDARKSTS SVFTLNGGAVV
Sbjct: 61  LLYGSKDLILTGYTDFDFQIDKDARKSTSGSVFTLNGGAVV 101

The following BLAST results are available for this feature:

BLAST of Cmc11g0299051 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061994.1	2.9e-50	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062116.1	1.1e-44	92.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04573.1	1.4e-44	92.08	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0051985.1	1.4e-44	92.08	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0063026.1	5.4e-44	88.12	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0299051 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.6e-25	55.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	6.9e-18	43.56	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	6.2e-11	38.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.4e-07	37.65	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.0e-05	36.47	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3W4	1.4e-50	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00299...	[more]
A0A5A7V6Q6	5.2e-45	92.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00472...	[more]
A0A5A7UE50	6.8e-45	92.08	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3BXV2	6.8e-45	92.08	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7UW06	2.6e-44	91.09	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00...	[more]

BLAST of Cmc11g0299051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..89
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 12..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0299051.1	Cmc11g0299051.1	mRNA