Cmc11g0298831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0298831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	transcription factor bHLH162-like
Location	CMiso1.1chr11: 18713535 .. 18714535 (+)
RNA-Seq Expression	Cmc11g0298831
Synteny	Cmc11g0298831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAAATTAAAGAGATGGGCTCTGCTGTGGAGGTTGTTTTAAAGACTGGGTTGGAGGATCGCTCAATGTTTTATGAGACTATTCGTATCCTTAATGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATGACACAATCCTATATTCACTCCATGCTGAGGTATATATTCTTACAATATTTTTAATACTATCTTCTATTCTACTATTTCCTTCTAAAACTAAAATAGTTTACACTTTCGATGTATATCATTATAACCCAAACTAAGGGCTGGTTTGGATTGATACTTAAAAAATATTTTTCAAAAAACTCGCTTTTAATTAAACTCTATTGATAAAAATTGTTTAAAAGACAAGTCAAAATAAATATATTTTGAGTAGTCATCAAATATTCTAATTTTTTTCAAAATAGCCTAATTTTTAAAACGAACCTTCGTTGCTAGGAAACAAGTTAATTCTTCGGAAACCAAATCCATATCCAACAAAGCCTCATATCTTCTTTAGCAATATATGATTTTGTACTGAGGTTTCTACTTTAAATTTATGTTGGTCTTCTACCATACTAAATTAAACACAATAATGTAATTCTAATAACAAAATGTAGTCTTAATTCAAAAACTACATTGTTTTTTAGTGTTAAAAATTTTGGCAAAGTAAATAATAAAACAAACAAATTGTTAATTGAACTTATTTTTGTAAGTTTAATTATGTTGAAAAGCTAAAACCCTAGAAAGTAAATAGTTATCAAATTGTAGTTGTTTTCCACCATAATTTGATACTGCAATTTGGAATTTTATTTGCAAAAAGAATTTTGAATTATGAATGAATTTAACAAAAATGGAACTATTATTTTTTGGGTTATAATTAATGGAGTAGATTGAAGATGTGGTGTACGACTTTGGAGGAAGGAAACTAATAGAGAGGCTAAACCAATTGGTGTACGAACCCAAGAATGAAGCAGAAATGGGAGTTTCGGGCAGCAGTCAGGCCTGA

mRNA sequence

TTGAAAATTAAAGAGATGGGCTCTGCTGTGGAGGTTGTTTTAAAGACTGGGTTGGAGGATCGCTCAATGTTTTATGAGACTATTCGTATCCTTAATGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATGACACAATCCTATATTCACTCCATGCTGAGATTGAAGATGTGGTGTACGACTTTGGAGGAAGGAAACTAATAGAGAGGCTAAACCAATTGGTGTACGAACCCAAGAATGAAGCAGAAATGGGAGTTTCGGGCAGCAGTCAGGCCTGA

Coding sequence (CDS)

ATGGGCTCTGCTGTGGAGGTTGTTTTAAAGACTGGGTTGGAGGATCGCTCAATGTTTTATGAGACTATTCGTATCCTTAATGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATGACACAATCCTATATTCACTCCATGCTGAGATTGAAGATGTGGTGTACGACTTTGGAGGAAGGAAACTAATAGAGAGGCTAAACCAATTGGTGTACGAACCCAAGAATGAAGCAGAAATGGGAGTTTCGGGCAGCAGTCAGGCCTGA

Protein sequence

MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDFGGRKLIERLNQLVYEPKNEAEMGVSGSSQA

Homology

[Close]

BLAST of Cmc11g0298831 vs. NCBI nr
Match: KAA0062040.1 (transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 89  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 148

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSGSSQA
Sbjct: 149 GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 178

[Close]

BLAST of Cmc11g0298831 vs. NCBI nr
Match: XP_016900533.1 (PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 9.3e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 87  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 146

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSG SQA
Sbjct: 147 GGRKLIERLNQLVYEPKNEAEMGVSGRSQA 176

[Close]

BLAST of Cmc11g0298831 vs. NCBI nr
Match: XP_016900532.1 (PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo] >TYK04981.1 transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 9.3e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 89  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 148

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSG SQA
Sbjct: 149 GGRKLIERLNQLVYEPKNEAEMGVSGRSQA 178

[Close]

BLAST of Cmc11g0298831 vs. NCBI nr
Match: XP_031743907.1 (uncharacterized protein LOC116404724 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 4.3e-29
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MG AVEVVL TGLEDRS+FY+TIRILNEERAEIINVSYSLLD+TILYSLHAEIEDVV+DF
Sbjct: 32  MGPAVEVVLTTGLEDRSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDF 91

Query: 61  GG-RKLIERLNQLVYEPKN 79
           GG +KLIERLNQLVYEPKN
Sbjct: 92  GGTKKLIERLNQLVYEPKN 110

[Close]

BLAST of Cmc11g0298831 vs. NCBI nr
Match: KAE8646851.1 (hypothetical protein Csa_020734 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 4.3e-29
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MG AVEVVL TGLEDRS+FY+TIRILNEERAEIINVSYSLLD+TILYSLHAEIEDVV+DF
Sbjct: 183 MGPAVEVVLTTGLEDRSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDF 242

Query: 61  GG-RKLIERLNQLVYEPKN 79
           GG +KLIERLNQLVYEPKN
Sbjct: 243 GGTKKLIERLNQLVYEPKN 261

[Close]

BLAST of Cmc11g0298831 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-08
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 2   GSAVEVVLKTGLEDRSMFYETIRILNEE-RAEIINVSYSLLDDTILYSLHAEIEDVVYDF 61
           GS   + L T LE + MF E IR+L EE  AEI +  YS++DD + ++LH ++E+  +D+
Sbjct: 115 GSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDY 174

Query: 62  GGRKLI-ERLNQLV 74
           G R  I ERL ++V
Sbjct: 175 GARSQIPERLEKIV 186

[Close]

BLAST of Cmc11g0298831 vs. ExPASy TrEMBL
Match: A0A5A7V416 (Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003780 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 89  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 148

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSGSSQA
Sbjct: 149 GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 178

[Close]

BLAST of Cmc11g0298831 vs. ExPASy TrEMBL
Match: A0A5D3BZ69 (Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002050 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.5e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 89  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 148

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSG SQA
Sbjct: 149 GGRKLIERLNQLVYEPKNEAEMGVSGRSQA 178

[Close]

BLAST of Cmc11g0298831 vs. ExPASy TrEMBL
Match: A0A1S4DX24 (transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.5e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 89  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 148

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSG SQA
Sbjct: 149 GGRKLIERLNQLVYEPKNEAEMGVSGRSQA 178

[Close]

BLAST of Cmc11g0298831 vs. ExPASy TrEMBL
Match: A0A1S4DX34 (transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.5e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF
Sbjct: 87  MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 146

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           GGRKLIERLNQLVYEPKNEAEMGVSG SQA
Sbjct: 147 GGRKLIERLNQLVYEPKNEAEMGVSGRSQA 176

[Close]

BLAST of Cmc11g0298831 vs. ExPASy TrEMBL
Match: A0A6J1G8B1 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.9e-23
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1   MGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAEIEDVVYDF 60
           MGSAVEVV  T L DR +FYE IRI +EERAEIIN +YS+LDDT+LYSLHAEIEDV+Y F
Sbjct: 104 MGSAVEVVFMTELNDRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAF 163

Query: 61  GGRKLIERLNQLVYEPKNEAEMGVSGSSQA 91
           G  KL ERL +L YE K++AE   +G+S +
Sbjct: 164 GATKLTERLKRLAYEWKSDAEQQAAGASSS 193

[Close]

BLAST of Cmc11g0298831 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-09
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 2   GSAVEVVLKTGLEDRSMFYETIRILNEE-RAEIINVSYSLLDDTILYSLHAEIEDVVYDF 61
           GS   + L T LE + MF E IR+L EE  AEI +  YS++DD + ++LH ++E+  +D+
Sbjct: 115 GSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDY 174

Query: 62  GGRKLI-ERLNQLV 74
           G R  I ERL ++V
Sbjct: 175 GARSQIPERLEKIV 186

The following BLAST results are available for this feature:

BLAST of Cmc11g0298831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062040.1	2.5e-40	100.00	transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016900533.1	9.3e-40	98.89	PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo]	[more]
XP_016900532.1	9.3e-40	98.89	PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo] >TYK04981....	[more]
XP_031743907.1	4.3e-29	89.87	uncharacterized protein LOC116404724 [Cucumis sativus]	[more]
KAE8646851.1	4.3e-29	89.87	hypothetical protein Csa_020734 [Cucumis sativus]	[more]

BLAST of Cmc11g0298831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	7.5e-08	43.24	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]

BLAST of Cmc11g0298831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V416	1.2e-40	100.00	Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3BZ69	4.5e-40	98.89	Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DX24	4.5e-40	98.89	transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
A0A1S4DX34	4.5e-40	98.89	transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
A0A6J1G8B1	2.9e-23	65.56	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 ...	[more]

BLAST of Cmc11g0298831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	5.3e-09	43.24	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13935:SF63	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 1..80
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0298831.1	Cmc11g0298831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity