Cmc11g0298461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0298461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Clathrin light chain
Location	CMiso1.1chr11: 18344963 .. 18346349 (+)
RNA-Seq Expression	Cmc11g0298461
Synteny	Cmc11g0298461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATCTCTGTTTCACTATTTATTATGCCATTATTTTCCTGATTACTGTTTCTCGATCCGAACACTGCGTTCATCGTCACCCCAACAACTCCCTAAACCTCAACAAACTCAGGAACTTTCCAATTCACGGAGGGAGACAACCAAATTTCTCAACAATGGCTTCCTTCGACGCCTTCACCAACGAAGAGCACGAACAACAACACCACCACCATTCCCCTACAGCGCAACCCTTTGATGATGATGGCTACATGGGATATGACTCTCGTCTCCCCTCTCAACCATACGACTCTTCCACCCCTTTCTCTCCCTCCCACGATGTTTCCCCCGCCGAGCAGCAACCTCAAGCTCCCCCTTCCTTTTTCGAAGACGACGTCATTTCCGATATCCACACTCCTGGAAACACCACTACTCCCAATTTGTCTGACGCTTACGATTTTGGAGTTTCTAATCCTAATCCTGACTATGTATCTCCCTTTGATTCTGTTGACGCTGATGCAGACCATGACAATGCCGCCGCTGCCGCCGTTGGTGGTGGTGGTGGTTTTGACGATGGTGGTCTTTTTGTCTCTGATGGACCGGTTCTCCCCGACCCCAGTGAAATGCGGGAGGAAGGCAATGCTCGACGCGAATGGCGACGGTACGTTTTTTTTTTTATTACCGTTATTCTTTGTTTCTTCTTGAGAGATTGGATTGGTTTTAGATCTGTGATTTTATCATTTTGGGAAGGATTGAAATGTTTCCTTGATGGGTTCATTTTTGTGCTGGAGATTGAAATGGAAGCTCTTGAGATTTTCCATTCTCTTCATAGTGACAGAAAAAAGTTTACCCAATAGCCTAAATTGTTAGCGCAAACGGTGGTTCAAATCTTCTTTGTTGCTAACTTTCACAACCCGCTAATCCCATGCGTGCGTAGTCTCATGATCTATATAGATCGTGTTTATTGTGGCTTTTCACCGATGGATTCCATTACTGGATGAATTTTTGGAAGGAACTATGAACAGTTAGTCATTTGTTGCGATATATCTGACATTAAATGTGTTGGTGTATTTGTTTATTGTAACTTACTTCTGTCTGATAATGGAATGTTCAAATATTGTAGTCCTGTGCCTGGTACAAGACAAATATTGGTGGCAGATTTGTCCTAACATCACGTGTTTGCATAAACGTCCAACATATTAGTAAGACCAATTATATACAAGTTTATTACAGTATTTTATGTAATATATCTATGGGAACAGAAAAAAGGGATAAGCTTAATTCTGTCTGCTTGAAGAAGTTTTTAGCTGATTCATTGGGAAGTTTGATACTGTGCAAAACTCTCATCTCTATTATGCATCATTTTTGTTAGCTGGCTTCATGTGCCACAGTAGTTTCAATTTTCAAGTTG

mRNA sequence

TTAATCTCTGTTTCACTATTTATTATGCCATTATTTTCCTGATTACTGTTTCTCGATCCGAACACTGCGTTCATCGTCACCCCAACAACTCCCTAAACCTCAACAAACTCAGGAACTTTCCAATTCACGGAGGGAGACAACCAAATTTCTCAACAATGGCTTCCTTCGACGCCTTCACCAACGAAGAGCACGAACAACAACACCACCACCATTCCCCTACAGCGCAACCCTTTGATGATGATGGCTACATGGGATATGACTCTCGTCTCCCCTCTCAACCATACGACTCTTCCACCCCTTTCTCTCCCTCCCACGATGTTTCCCCCGCCGAGCAGCAACCTCAAGCTCCCCCTTCCTTTTTCGAAGACGACGTCATTTCCGATATCCACACTCCTGGAAACACCACTACTCCCAATTTGTCTGACGCTTACGATTTTGGAGTTTCTAATCCTAATCCTGACTATGTATCTCCCTTTGATTCTGTTGACGCTGATGCAGACCATGACAATGCCGCCGCTGCCGCCGTTGGTGGTGGTGGTGGTTTTGACGATGGTGGTCTTTTTGTCTCTGATGGACCGGTTCTCCCCGACCCCAGTGAAATGCGGGAGGAAGGCAATGCTCGACGCGAATGGCGACGTCCTGTGCCTGGTACAAGACAAATATTGGTGGCAGATTTGTCCTAACATCACGTGTTTGCATAAACGTCCAACATATTAGTAAGACCAATTATATACAAGTTTATTACAGTATTTTATGTAATATATCTATGGGAACAGAAAAAAGGGATAAGCTTAATTCTGTCTGCTTGAAGAAGTTTTTAGCTGATTCATTGGGAAGTTTGATACTGTGCAAAACTCTCATCTCTATTATGCATCATTTTTGTTAGCTGGCTTCATGTGCCACAGTAGTTTCAATTTTCAAGTTG

Coding sequence (CDS)

ATGGCTTCCTTCGACGCCTTCACCAACGAAGAGCACGAACAACAACACCACCACCATTCCCCTACAGCGCAACCCTTTGATGATGATGGCTACATGGGATATGACTCTCGTCTCCCCTCTCAACCATACGACTCTTCCACCCCTTTCTCTCCCTCCCACGATGTTTCCCCCGCCGAGCAGCAACCTCAAGCTCCCCCTTCCTTTTTCGAAGACGACGTCATTTCCGATATCCACACTCCTGGAAACACCACTACTCCCAATTTGTCTGACGCTTACGATTTTGGAGTTTCTAATCCTAATCCTGACTATGTATCTCCCTTTGATTCTGTTGACGCTGATGCAGACCATGACAATGCCGCCGCTGCCGCCGTTGGTGGTGGTGGTGGTTTTGACGATGGTGGTCTTTTTGTCTCTGATGGACCGGTTCTCCCCGACCCCAGTGAAATGCGGGAGGAAGGCAATGCTCGACGCGAATGGCGACGTCCTGTGCCTGGTACAAGACAAATATTGGTGGCAGATTTGTCCTAA

Protein sequence

MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQQPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAAAAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRRPVPGTRQILVADLS

Homology

[Close]

BLAST of Cmc11g0298461 vs. NCBI nr
Match: KAA0062081.1 (clathrin light chain 1 [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.4e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ
Sbjct: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
           QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA
Sbjct: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 161

[Close]

BLAST of Cmc11g0298461 vs. NCBI nr
Match: XP_008448281.1 (PREDICTED: clathrin light chain 1 [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 3.4e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ
Sbjct: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
           QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA
Sbjct: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 161

[Close]

BLAST of Cmc11g0298461 vs. NCBI nr
Match: TYK04938.1 (clathrin light chain 1 [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.4e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ
Sbjct: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
           QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA
Sbjct: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 161

[Close]

BLAST of Cmc11g0298461 vs. NCBI nr
Match: XP_011656953.1 (clathrin light chain 1 [Cucumis sativus] >KAE8646860.1 hypothetical protein Csa_020622 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 2.0e-70
Identity = 138/163 (84.66%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQ--HHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPA 60
           MASFD FTNEEHE +  HHHHSPT QPFDDD YM +DS LPSQPYDSSTPFSPSHD+S  
Sbjct: 1   MASFDTFTNEEHEHEHHHHHHSPTDQPFDDDAYMAFDSTLPSQPYDSSTPFSPSHDISSP 60

Query: 61  EQQPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDN 120
           + QPQ PPSFFED+VISDIH+PGNTT PNLSDAYDFGVSNPNPDYVSPF S DADADHDN
Sbjct: 61  DHQPQPPPSFFEDNVISDIHSPGNTTNPNLSDAYDFGVSNPNPDYVSPFHSADADADHDN 120

Query: 121 AAAAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAA AV GGG FDDGGLF SDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAPAV-GGGAFDDGGLFASDGPVLPDPSEMREEGNARREWRR 162

[Close]

BLAST of Cmc11g0298461 vs. NCBI nr
Match: XP_038900435.1 (LOW QUALITY PROTEIN: clathrin light chain 1 [Benincasa hispida])

HSP 1 Score: 255.8 bits (652), Expect = 2.8e-64
Identity = 130/161 (80.75%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFD FTNEE EQQ HHHSPTAQPFDDDGY+GYDS LPS P+DSSTPFSPS D++ A+Q
Sbjct: 66  MASFDTFTNEELEQQQHHHSPTAQPFDDDGYVGYDSSLPSHPHDSSTPFSPSDDITSADQ 125

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
            P  PPSFFEDDVIS     G+TT PN SDAYDFGVSNPNPDY SPFDSV AD +HDNAA
Sbjct: 126 HPHPPPSFFEDDVIS----AGDTTNPNFSDAYDFGVSNPNPDYASPFDSVHADGNHDNAA 185

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AA  GGGGGFDDGG+FVSDGPVLPDPSEMREEG+ARREWRR
Sbjct: 186 AA--GGGGGFDDGGIFVSDGPVLPDPSEMREEGHARREWRR 220

[Close]

BLAST of Cmc11g0298461 vs. ExPASy Swiss-Prot
Match: Q9SKU1 (Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-12
Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 28  DDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQQPQAPPSFFEDDVISDIHTPGNTTTPN 87
           DDG     +  PS+  D    F    + S A+Q    PP+  +    S  +  G+  +PN
Sbjct: 5   DDGDFPAQTHSPSEHED----FGGYDNFSEAQQ----PPTQHQSGGFSSFN--GDPASPN 64

Query: 88  LSDAYDFGVSNPNPDYVSPFDSVDADADHDNAAAAAVGGGGGFDDGGLFVSDGPVLPDPS 147
               Y FG S+PN D+ SPF+S   DA+         G GGG     +F SDGP+LPDP+
Sbjct: 65  ---GYGFGASSPNHDFSSPFESSVNDAN---------GNGGGSGGDAIFASDGPILPDPN 116

Query: 148 EMREEGNARREWRR 162
           EMREEG  RREWRR
Sbjct: 125 EMREEGFQRREWRR 116

[Close]

BLAST of Cmc11g0298461 vs. ExPASy Swiss-Prot
Match: Q6Z3A8 (Clathrin light chain 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0461500 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.8e-04
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 124 VGGGGGFDD----GGLFVSDGPVLPDPSEMREEGNARREWRR 162
           VG GGG DD    G     DGPVLP P  M+EEG  RREWRR
Sbjct: 116 VGDGGGIDDDLFAGAGDGDDGPVLPPPEAMKEEGILRREWRR 157

[Close]

BLAST of Cmc11g0298461 vs. ExPASy TrEMBL
Match: A0A5D3C0Z6 (Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001510 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ
Sbjct: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
           QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA
Sbjct: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 161

[Close]

BLAST of Cmc11g0298461 vs. ExPASy TrEMBL
Match: A0A5A7V8R6 (Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004290 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ
Sbjct: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
           QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA
Sbjct: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 161

[Close]

BLAST of Cmc11g0298461 vs. ExPASy TrEMBL
Match: A0A1S3BJB2 (Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103490517 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ
Sbjct: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
           QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA
Sbjct: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 161

[Close]

BLAST of Cmc11g0298461 vs. ExPASy TrEMBL
Match: A0A0A0KD26 (Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_6G128590 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.6e-71
Identity = 138/163 (84.66%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQ--HHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPA 60
           MASFD FTNEEHE +  HHHHSPT QPFDDD YM +DS LPSQPYDSSTPFSPSHD+S  
Sbjct: 1   MASFDTFTNEEHEHEHHHHHHSPTDQPFDDDAYMAFDSTLPSQPYDSSTPFSPSHDISSP 60

Query: 61  EQQPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDN 120
           + QPQ PPSFFED+VISDIH+PGNTT PNLSDAYDFGVSNPNPDYVSPF S DADADHDN
Sbjct: 61  DHQPQPPPSFFEDNVISDIHSPGNTTNPNLSDAYDFGVSNPNPDYVSPFHSADADADHDN 120

Query: 121 AAAAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AAA AV GGG FDDGGLF SDGPVLPDPSEMREEGNARREWRR
Sbjct: 121 AAAPAV-GGGAFDDGGLFASDGPVLPDPSEMREEGNARREWRR 162

[Close]

BLAST of Cmc11g0298461 vs. ExPASy TrEMBL
Match: A0A6J1CGW6 (Clathrin light chain OS=Momordica charantia OX=3673 GN=LOC111011316 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.3e-59
Identity = 119/161 (73.91%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MASFDAFTNEEHEQQHHHHSPTAQPFDDDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQ 60
           MASFDAF+N+EH+ Q  HHSPT +PFDDD ++GYDS LPSQ YDSST FSP+ D+S A+Q
Sbjct: 68  MASFDAFSNDEHDDQ-QHHSPTTRPFDDDDFIGYDSHLPSQRYDSSTTFSPADDISSADQ 127

Query: 61  QPQAPPSFFEDDVISDIHTPGNTTTPNLSDAYDFGVSNPNPDYVSPFDSVDADADHDNAA 120
            P+APPSFFE+DV+SD+HT  NT  PNLSD YDFG S+PNPDYVSPFD +DAD DHDNAA
Sbjct: 128 LPRAPPSFFEEDVVSDVHTAANTNIPNLSDVYDFGGSDPNPDYVSPFDPLDADGDHDNAA 187

Query: 121 AAAVGGGGGFDDGGLFVSDGPVLPDPSEMREEGNARREWRR 162
           AA V   GG DDGG+F SDGPVLPDPSEMREEG ARREWRR
Sbjct: 188 AAGV---GGIDDGGIFASDGPVLPDPSEMREEGYARREWRR 224

[Close]

BLAST of Cmc11g0298461 vs. TAIR 10
Match: AT2G20760.1 (Clathrin light chain protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-13
Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 28  DDGYMGYDSRLPSQPYDSSTPFSPSHDVSPAEQQPQAPPSFFEDDVISDIHTPGNTTTPN 87
           DDG     +  PS+  D    F    + S A+Q    PP+  +    S  +  G+  +PN
Sbjct: 5   DDGDFPAQTHSPSEHED----FGGYDNFSEAQQ----PPTQHQSGGFSSFN--GDPASPN 64

Query: 88  LSDAYDFGVSNPNPDYVSPFDSVDADADHDNAAAAAVGGGGGFDDGGLFVSDGPVLPDPS 147
               Y FG S+PN D+ SPF+S   DA+         G GGG     +F SDGP+LPDP+
Sbjct: 65  ---GYGFGASSPNHDFSSPFESSVNDAN---------GNGGGSGGDAIFASDGPILPDPN 116

Query: 148 EMREEGNARREWRR 162
           EMREEG  RREWRR
Sbjct: 125 EMREEGFQRREWRR 116

The following BLAST results are available for this feature:

BLAST of Cmc11g0298461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062081.1	3.4e-86	100.00	clathrin light chain 1 [Cucumis melo var. makuwa]	[more]
XP_008448281.1	3.4e-86	100.00	PREDICTED: clathrin light chain 1 [Cucumis melo]	[more]
TYK04938.1	3.4e-86	100.00	clathrin light chain 1 [Cucumis melo var. makuwa]	[more]
XP_011656953.1	2.0e-70	84.66	clathrin light chain 1 [Cucumis sativus] >KAE8646860.1 hypothetical protein Csa_...	[more]
XP_038900435.1	2.8e-64	80.75	LOW QUALITY PROTEIN: clathrin light chain 1 [Benincasa hispida]	[more]

BLAST of Cmc11g0298461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKU1	7.5e-12	40.30	Clathrin light chain 1 OS=Arabidopsis thaliana OX=3702 GN=At2g20760 PE=2 SV=1	[more]
Q6Z3A8	9.8e-04	59.52	Clathrin light chain 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0461500 ...	[more]

BLAST of Cmc11g0298461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0Z6	1.6e-86	100.00	Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143...	[more]
A0A5A7V8R6	1.6e-86	100.00	Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G...	[more]
A0A1S3BJB2	1.6e-86	100.00	Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103490517 PE=3 SV=1	[more]
A0A0A0KD26	9.6e-71	84.66	Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_6G128590 PE=3 SV=1	[more]
A0A6J1CGW6	1.3e-59	73.91	Clathrin light chain OS=Momordica charantia OX=3673 GN=LOC111011316 PE=3 SV=1	[more]

BLAST of Cmc11g0298461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20760.1	5.3e-13	40.30	Clathrin light chain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..94
None	No IPR available	PANTHER	PTHR10639:SF33	CLATHRIN LIGHT CHAIN	coord: 1..161
IPR000996	Clathrin light chain	PANTHER	PTHR10639	CLATHRIN LIGHT CHAIN	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0298461.1	Cmc11g0298461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030132	clathrin coat of coated pit
cellular_component	GO:0030130	clathrin coat of trans-Golgi network vesicle
molecular_function	GO:0005198	structural molecule activity