Cmc11g0298371 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0298371
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr11: 18094731 .. 18095399 (-)
RNA-Seq ExpressionCmc11g0298371
SyntenyCmc11g0298371
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTTTCCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACCACTACCCCTTGCCCAGGATTGATGACTTGTTCCATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTACGATCAGGCTATCACCAGTTGAGGATCAGGGACAGTGATATCCCTATGACGGCCTTCAATTCTAGATACGGTCATTACAAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGTGGTATTCATGAACTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTTGTCATAGTTTTCATTGACGACATTTTGATCTACTCCAAAACGGAGGCTGAGCATGAGGAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGAACATGTGGTATCCAGTGAGGGACTTTCTGTGGATCCAACAAAGATCAGAGCGGTTACCAATTGGCCCCGACCGTCTACAGTTAGCGAGATTCGTAGTCTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCGCATATAGCCAGCCTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTTTGGAGCCCAGCTTGCGAGGGTAG

mRNA sequence

ATGCACCTTTCCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACCACTACCCCTTGCCCAGGATTGATGACTTGTTCCATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTACGATCAGGCTATCACCAGTTGAGGATCAGGGACAGTGATATCCCTATGACGGCCTTCAATTCTAGATACGGTCATTACAAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGTGGTATTCATGAACTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTTGTCATAGTTTTCATTGACGACATTTTGATCTACTCCAAAACGGAGGCTGAGCATGAGGAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGAACATGTGGTATCCAGTGAGGGACTTTCTGTGGATCCAACAAAGATCAGAGCGGTTACCAATTGGCCCCGACCGTCTACAGTTAGCGAGATTCGTAGTCTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCGCATATAGCCAGCCTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTTTGGAGCCCAGCTTGCGAGGGTAG

Coding sequence (CDS)

ATGCACCTTTCCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACCACTACCCCTTGCCCAGGATTGATGACTTGTTCCATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTACGATCAGGCTATCACCAGTTGAGGATCAGGGACAGTGATATCCCTATGACGGCCTTCAATTCTAGATACGGTCATTACAAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGTGGTATTCATGAACTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTTGTCATAGTTTTCATTGACGACATTTTGATCTACTCCAAAACGGAGGCTGAGCATGAGGAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGAACATGTGGTATCCAGTGAGGGACTTTCTGTGGATCCAACAAAGATCAGAGCGGTTACCAATTGGCCCCGACCGTCTACAGTTAGCGAGATTCGTAGTCTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCGCATATAGCCAGCCTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTTTGGAGCCCAGCTTGCGAGGGTAG

Protein sequence

MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSEIRSLLGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG
Homology
BLAST of Cmc11g0298371 vs. NCBI nr
Match: KAA0062105.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 445.7 bits (1145), Expect = 2.4e-121
Identity = 218/222 (98.20%), Postives = 218/222 (98.20%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIP TA
Sbjct: 323 MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 382

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           FNSRYGHYKFIVMSFGLTNAPVVFMNLMN VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 383 FNSRYGHYKFIVMSFGLTNAPVVFMNLMNNVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 442

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNW RPSTVSE
Sbjct: 443 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWSRPSTVSE 502

Query: 181 IRSLLGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG 223
           IRS LGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG
Sbjct: 503 IRSFLGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG 544

BLAST of Cmc11g0298371 vs. NCBI nr
Match: TYK05193.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 5.6e-102
Identity = 188/220 (85.45%), Postives = 200/220 (90.91%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKN YPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRD DIP TA
Sbjct: 684 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 743

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F SRYGHY+F+VMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 744 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 803

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG+SVDPTKI AVTNWPRPSTVSE
Sbjct: 804 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSE 863

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS IAS L  + ++G PF   P+
Sbjct: 864 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 903

BLAST of Cmc11g0298371 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 7.3e-102
Identity = 188/220 (85.45%), Postives = 199/220 (90.45%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKN YPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRD DIP TA
Sbjct: 613 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F SRYGHYKF+VMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 673 FRSRYGHYKFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG+SVDP KI AVTNWPRPSTVSE
Sbjct: 733 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS IAS L  + ++G PF   P+
Sbjct: 793 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 832

BLAST of Cmc11g0298371 vs. NCBI nr
Match: KAA0055932.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.6 bits (976), Expect = 9.5e-102
Identity = 187/220 (85.00%), Postives = 198/220 (90.00%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKNHYPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRD DIP TA
Sbjct: 641 MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 700

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F SRYGHY+F+VMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG SVDP KI AVTNWPRPSTVSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGFSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS I S L  + ++G PF   P+
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIVSPLTQLTRKGTPFVWSPA 860

BLAST of Cmc11g0298371 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.6 bits (976), Expect = 9.5e-102
Identity = 189/220 (85.91%), Postives = 199/220 (90.45%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKN YPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRDSDIP TA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F  RYGHY+FIVMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG+SVDP KI AVTNWPRPSTVSE
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS IAS L  + +EG PF   P+
Sbjct: 781 IRSFLGLAGYYRRFVEDFSRIASPLTQLTREGTPFVWSPT 820

BLAST of Cmc11g0298371 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-42
Identity = 76/198 (38.38%), Postives = 127/198 (64.14%), Query Frame = 0

Query: 5   IDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFNSR 64
           IDYR+LN++T+ + YP+P +D++  +L     F+ IDL  G+HQ+ + +  I  TAF+++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQV 124
            GHY+++ M FGL NAP  F   MN + +  L+   +V++DDI+I+S +  EH   +  V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSEIRSL 184
              L    L  +  KCEF  K+ +FL H+V+ +G+  +P K++A+ ++P P+   EIR+ 
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLAGYYRRFVEDFSHIA 203
           LGL GYYR+F+ +++ IA
Sbjct: 445 LGLTGYYRKFIPNYADIA 462

BLAST of Cmc11g0298371 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.7e-42
Identity = 76/198 (38.38%), Postives = 127/198 (64.14%), Query Frame = 0

Query: 5   IDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFNSR 64
           IDYR+LN++TV + +P+P +D++  +L     F+ IDL  G+HQ+ +    +  TAF+++
Sbjct: 266 IDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTK 325

Query: 65  YGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQV 124
           +GHY+++ M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH + L  V
Sbjct: 326 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLV 385

Query: 125 LETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSEIRSL 184
            E L    L  +  KCEF  ++ +FL HV++ +G+  +P KI A+  +P P+   EI++ 
Sbjct: 386 FEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAF 445

Query: 185 LGLAGYYRRFVEDFSHIA 203
           LGL GYYR+F+ +F+ IA
Sbjct: 446 LGLTGYYRKFIPNFADIA 463

BLAST of Cmc11g0298371 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-40
Identity = 71/198 (35.86%), Postives = 127/198 (64.14%), Query Frame = 0

Query: 5   IDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFNSR 64
           +D++ LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +++SDIP TAF++ 
Sbjct: 182 VDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTL 241

Query: 65  YGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQV 124
            G Y+F+ + FGL NAP +F  +++ + ++ +     V+IDDI+++S+    H ++L  V
Sbjct: 242 NGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLV 301

Query: 125 LETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSEIRSL 184
           L +L    L     K  F   +V FL ++V+++G+  DP K+RA++  P P++V E++  
Sbjct: 302 LASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRF 361

Query: 185 LGLAGYYRRFVEDFSHIA 203
           LG+  YYR+F++D++ +A
Sbjct: 362 LGMTSYYRKFIQDYAKVA 379

BLAST of Cmc11g0298371 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 82/200 (41.00%), Postives = 121/200 (60.50%), Query Frame = 0

Query: 3   LSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFN 62
           L +DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D   TAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63  SRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 122
           +  G Y++ VM FGL NAP  F   M   F+D    FV V++DDILI+S++  EH +HL 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 123 QVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSEIR 182
            VLE L+   L  K  KC+F  ++  FL + +  + ++    K  A+ ++P P TV + +
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 827

Query: 183 SLLGLAGYYRRFVEDFSHIA 203
             LG+  YYRRF+ + S IA
Sbjct: 828 RFLGMINYYRRFIPNCSKIA 845

BLAST of Cmc11g0298371 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 82/200 (41.00%), Postives = 121/200 (60.50%), Query Frame = 0

Query: 3   LSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFN 62
           L +DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D   TAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  SRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 122
           +  G Y++ VM FGL NAP  F   M   F+D    FV V++DDILI+S++  EH +HL 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 123 QVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSEIR 182
            VLE L+   L  K  KC+F  ++  FL + +  + ++    K  A+ ++P P TV + +
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 853

Query: 183 SLLGLAGYYRRFVEDFSHIA 203
             LG+  YYRRF+ + S IA
Sbjct: 854 RFLGMINYYRRFIPNCSKIA 871

BLAST of Cmc11g0298371 vs. ExPASy TrEMBL
Match: A0A5A7V874 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004590 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121
Identity = 218/222 (98.20%), Postives = 218/222 (98.20%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIP TA
Sbjct: 323 MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 382

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           FNSRYGHYKFIVMSFGLTNAPVVFMNLMN VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 383 FNSRYGHYKFIVMSFGLTNAPVVFMNLMNNVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 442

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNW RPSTVSE
Sbjct: 443 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWSRPSTVSE 502

Query: 181 IRSLLGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG 223
           IRS LGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG
Sbjct: 503 IRSFLGLAGYYRRFVEDFSHIASLDPVDQEGNPFCLEPSLRG 544

BLAST of Cmc11g0298371 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.7e-102
Identity = 188/220 (85.45%), Postives = 200/220 (90.91%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKN YPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRD DIP TA
Sbjct: 684 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 743

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F SRYGHY+F+VMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 744 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 803

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG+SVDPTKI AVTNWPRPSTVSE
Sbjct: 804 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSE 863

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS IAS L  + ++G PF   P+
Sbjct: 864 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 903

BLAST of Cmc11g0298371 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.5e-102
Identity = 188/220 (85.45%), Postives = 199/220 (90.45%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKN YPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRD DIP TA
Sbjct: 613 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F SRYGHYKF+VMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 673 FRSRYGHYKFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG+SVDP KI AVTNWPRPSTVSE
Sbjct: 733 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS IAS L  + ++G PF   P+
Sbjct: 793 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 832

BLAST of Cmc11g0298371 vs. ExPASy TrEMBL
Match: A0A5A7UJ81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00550 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.6e-102
Identity = 187/220 (85.00%), Postives = 198/220 (90.00%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKNHYPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRD DIP TA
Sbjct: 641 MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 700

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F SRYGHY+F+VMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG SVDP KI AVTNWPRPSTVSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGFSVDPAKIEAVTNWPRPSTVSE 820

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS I S L  + ++G PF   P+
Sbjct: 821 IRSFLGLAGYYRRFVEDFSRIVSPLTQLTRKGTPFVWSPA 860

BLAST of Cmc11g0298371 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.6e-102
Identity = 189/220 (85.91%), Postives = 199/220 (90.45%), Query Frame = 0

Query: 1   MHLSIDYRELNKVTVKNHYPLPRIDDLFHQLQGATVFSKIDLRSGYHQLRIRDSDIPMTA 60
           M L IDYRELNKVTVKN YPLPRIDDLF QLQGATVFSKIDLRSGYHQLRIRDSDIP TA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FNSRYGHYKFIVMSFGLTNAPVVFMNLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120
           F  RYGHY+FIVMSFGLTNAP VFM+LMN+VFKDFLDSFVIVFIDDILIYSKTEAEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANRLYAKFSKCEFWLKKVSFLEHVVSSEGLSVDPTKIRAVTNWPRPSTVSE 180
           LHQVLETLRAN+LYAKFSKCEFWL+KV+FL HVVSSEG+SVDP KI AVTNWPRPSTVSE
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 IRSLLGLAGYYRRFVEDFSHIAS-LDPVDQEGNPFCLEPS 220
           IRS LGLAGYYRRFVEDFS IAS L  + +EG PF   P+
Sbjct: 781 IRSFLGLAGYYRRFVEDFSRIASPLTQLTREGTPFVWSPT 820

BLAST of Cmc11g0298371 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 8.5e-16
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 120 HLHQVLETLRANRLYAKFSKCEFWLKKVSFL--EHVVSSEGLSVDPTKIRAVTNWPRPST 179
           HL  VL+    ++ YA   KC F   ++++L   H++S EG+S DP K+ A+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEIRSLLGLAGYYRRFVEDFSHI 202
            +E+R  LGL GYYRRFV+++  I
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKI 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062105.12.4e-12198.20ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05193.15.6e-10285.45pol protein [Cucumis melo var. makuwa][more]
KAA0032541.17.3e-10285.45pol protein [Cucumis melo var. makuwa][more]
KAA0055932.19.5e-10285.00pol protein [Cucumis melo var. makuwa][more]
TYK01306.19.5e-10285.91pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208251.0e-4238.38Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043236.7e-4238.38Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P96.3e-4035.86Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Q993151.2e-3841.00Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.2e-3841.00Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5A7V8741.2e-12198.20Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BZN12.7e-10285.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14... [more]
A0A5A7SSL33.5e-10285.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46... [more]
A0A5A7UJ814.6e-10285.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31... [more]
A0A5D3BSV94.6e-10285.91Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82... [more]
Match NameE-valueIdentityDescription
ATMG00860.18.5e-1641.67DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 164..205
e-value: 7.5E-14
score: 53.5
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 19..154
e-value: 7.1E-63
score: 213.7
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 3..79
e-value: 7.1E-63
score: 213.7
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 6..201
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 6..201
NoneNo IPR availableCDDcd01647RT_LTRcoord: 5..154
e-value: 6.96179E-77
score: 227.478
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 3..150
e-value: 1.3E-25
score: 90.2
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..161
score: 9.244599
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 5..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0298371.1Cmc11g0298371.1mRNA