Cmc11g0298321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0298321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr11: 18023335 .. 18024211 (-)
RNA-Seq Expression	Cmc11g0298321
Synteny	Cmc11g0298321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATTACGGGACTGCCGACGACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAATGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTTCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGACACCATTTGAAGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGCGAGCAAAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTGGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGCGTCGTGCGTTTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTCGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTACGTGTCAGATCCATCCCATGTAGTGGATTACGAGCCATTAGAGATTGATGAAAACTTGA

mRNA sequence

ATGGATTTCATTACGGGACTGCCGACGACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAATGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTTCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGACACCATTTGAAGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGCGAGCAAAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTGGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGCGTCGTGCGTTTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTCGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAATTGATGAAAACTTGA

Coding sequence (CDS)

ATGGATTTCATTACGGGACTGCCGACGACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAATGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTTCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGACACCATTTGAAGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGCGAGCAAAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTGGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGCGTCGTGCGTTTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTCGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAATTGATGAAAACTTGA

Protein sequence

MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSIVSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKLMKT

Homology

[Close]

BLAST of Cmc11g0298321 vs. NCBI nr
Match: KAA0066456.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 546.6 bits (1407), Expect = 1.2e-151
Identity = 266/272 (97.79%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 1152 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1211

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1212 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1271

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
            DSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 1272 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1331

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLE EVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE
Sbjct: 1332 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 1391

Query: 241  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 1392 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1423

[Close]

BLAST of Cmc11g0298321 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 544.3 bits (1401), Expect = 6.2e-151
Identity = 264/272 (97.06%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1   MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
           MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636

Query: 61  VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

Query: 121 DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
           DSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLE EVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFE
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 816

Query: 241 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 817 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 848

[Close]

BLAST of Cmc11g0298321 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 543.9 bits (1400), Expect = 8.1e-151
Identity = 263/272 (96.69%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1   MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
           MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 272 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 331

Query: 61  VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 332 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

Query: 121 DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
           DSHLHLMEFAYNNSYQATIGMTPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 392 DSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 451

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLE E+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFE
Sbjct: 452 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 511

Query: 241 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Sbjct: 512 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 543

[Close]

BLAST of Cmc11g0298321 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 543.9 bits (1400), Expect = 8.1e-151
Identity = 263/272 (96.69%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 1102 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1161

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1162 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1221

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
            DSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 1222 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1281

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLE E+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFE
Sbjct: 1282 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 1341

Query: 241  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 1342 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1373

[Close]

BLAST of Cmc11g0298321 vs. NCBI nr
Match: KAA0061618.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 542.3 bits (1396), Expect = 2.3e-150
Identity = 264/272 (97.06%), Postives = 267/272 (98.16%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 1258 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1317

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTER+NQVLEDMLRACALEFPGSW
Sbjct: 1318 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERMNQVLEDMLRACALEFPGSW 1377

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
            DSHLHLMEFAYNNSYQATIGM PFEALY KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 1378 DSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1437

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLE EVGD VFLKVAPMRGVVRFERRGKLSPRFVGPFE
Sbjct: 1438 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDNVFLKVAPMRGVVRFERRGKLSPRFVGPFE 1497

Query: 241  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 1498 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1529

[Close]

BLAST of Cmc11g0298321 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.3e-38
Identity = 97/276 (35.14%), Postives = 147/276 (53.26%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-ELEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVG 240
            Q ++  ++T   + K Y D++ +++ E + GD V +K    R    F  +  KL+P F G
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAG 1228

Query: 241  PFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK 273
            PF +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc11g0298321 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.3e-38
Identity = 97/276 (35.14%), Postives = 147/276 (53.26%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-ELEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVG 240
            Q ++  ++T   + K Y D++ +++ E + GD V +K    R    F  +  KL+P F G
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAG 1228

Query: 241  PFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK 273
            PF +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc11g0298321 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.3e-38
Identity = 97/276 (35.14%), Postives = 147/276 (53.26%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-ELEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVG 240
            Q ++  ++T   + K Y D++ +++ E + GD V +K    R    F  +  KL+P F G
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAG 1228

Query: 241  PFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK 273
            PF +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc11g0298321 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.3e-38
Identity = 97/276 (35.14%), Postives = 147/276 (53.26%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-ELEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVG 240
            Q ++  ++T   + K Y D++ +++ E + GD V +K    R    F  +  KL+P F G
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAG 1228

Query: 241  PFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK 273
            PF +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc11g0298321 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.3e-38
Identity = 97/276 (35.14%), Postives = 147/276 (53.26%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-ELEVGDKVFLKVAPMRGVVRF-ERRGKLSPRFVG 240
            Q ++  ++T   + K Y D++ +++ E + GD V +K    R    F  +  KL+P F G
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAG 1228

Query: 241  PFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK 273
            PF +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL
Match: A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 6.0e-152
Identity = 266/272 (97.79%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 1152 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1211

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1212 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1271

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
            DSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 1272 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1331

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLE EVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE
Sbjct: 1332 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 1391

Query: 241  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 1392 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1423

[Close]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.0e-151
Identity = 264/272 (97.06%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1   MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
           MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636

Query: 61  VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

Query: 121 DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
           DSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLE EVGDKVFLKVAPM+GV+RFERRGKLSPRFVGPFE
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 816

Query: 241 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 817 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 848

[Close]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 3.9e-151
Identity = 263/272 (96.69%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1   MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
           MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 272 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 331

Query: 61  VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 332 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

Query: 121 DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
           DSHLHLMEFAYNNSYQATIGMTPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 392 DSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 451

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLE E+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFE
Sbjct: 452 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 511

Query: 241 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Sbjct: 512 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 543

[Close]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 3.9e-151
Identity = 263/272 (96.69%), Postives = 269/272 (98.90%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 1102 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1161

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1162 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1221

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
            DSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 1222 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1281

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLE E+GDKVFLKVAPM+GV+RFERRGKLSPRFVGPFE
Sbjct: 1282 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 1341

Query: 241  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 1342 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1373

[Close]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL
Match: A0A5A7V223 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3980G00010 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.1e-150
Identity = 264/272 (97.06%), Postives = 267/272 (98.16%), Query Frame = 0


Query: 1    MDFITGLPTTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGMPVSI 60
            MDFITGLP TLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHG+PVSI
Sbjct: 1258 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1317

Query: 61   VSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTER+NQVLEDMLRACALEFPGSW
Sbjct: 1318 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERMNQVLEDMLRACALEFPGSW 1377

Query: 121  DSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 180
            DSHLHLMEFAYNNSYQATIGM PFEALY KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ
Sbjct: 1378 DSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1437

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLELEVGDKVFLKVAPMRGVVRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLE EVGD VFLKVAPMRGVVRFERRGKLSPRFVGPFE
Sbjct: 1438 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDNVFLKVAPMRGVVRFERRGKLSPRFVGPFE 1497

Query: 241  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Sbjct: 1498 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1529

The following BLAST results are available for this feature:

BLAST of Cmc11g0298321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066456.1	1.2e-151	97.79	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	6.2e-151	97.06	pol protein [Cucumis melo subsp. melo]	[more]
KAA0064005.1	8.1e-151	96.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	8.1e-151	96.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0061618.1	2.3e-150	97.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0298321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	4.3e-38	35.14	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.3e-38	35.14	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.3e-38	35.14	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.3e-38	35.14	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	4.3e-38	35.14	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJE2	6.0e-152	97.79	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
Q84KB0	3.0e-151	97.06	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7VDP3	3.9e-151	96.69	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7U7V9	3.9e-151	96.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7V223	1.1e-150	97.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39...	[more]

BLAST of Cmc11g0298321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..194 e-value: 9.3E-45 score: 154.4
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 10..149
None	No IPR available	PANTHER	PTHR46148:SF39	SUBFAMILY NOT NAMED	coord: 10..149
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 18.662233
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0298321.1	Cmc11g0298321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding