Cmc11g0297631 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0297631
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 16993035 .. 16993643 (+)
RNA-Seq Expression	Cmc11g0297631
Synteny	Cmc11g0297631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTTATTGATGATATATTAGTTTACTCGGTTGACAGAGAATTCCATAAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTATATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAGCTAGTGCGACAGAAGTACGTAGTTTCCTAGGTTTGGCAAGATACTATAGCCGTTTTATTGAGGATTTCTCTCGATTGGCATTTCCTTCGATCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTTACAACACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

mRNA sequence

ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTTATTGATGATATATTAGTTTACTCGGTTGACAGAGAATTCCATAAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTATATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAGCTAGTGCGACAGAAGTACGTAGTTTCCTAGGTTTGGCAAGATACTATAGCCGTTTTATTGAGGATTTCTCTCGATTGGCATTTCCTTCGATCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTTACAACACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

Coding sequence (CDS)

ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTTATTGATGATATATTAGTTTACTCGGTTGACAGAGAATTCCATAAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTATATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAGCTAGTGCGACAGAAGTACGTAGTTTCCTAGGTTTGGCAAGATACTATAGCCGTTTTATTGAGGATTTCTCTCGATTGGCATTTCCTTCGATCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTTACAACACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGTAG

Protein sequence

MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYSRFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASR

Homology

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BLAST of Cmc11g0297631 vs. NCBI nr
Match: KAA0065345.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 405.6 bits (1041), Expect = 2.5e-109
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ
Sbjct: 548 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 607

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS
Sbjct: 608 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 667

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD
Sbjct: 668 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 727

Query: 181 ASRLGLGCVLMQDGNVIAYAS 202
           ASRLGLGCVLMQDGNVIAYAS
Sbjct: 728 ASRLGLGCVLMQDGNVIAYAS 748

[Close]

BLAST of Cmc11g0297631 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 191/202 (94.55%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           M FGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKNAKFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 842 ASRLGLGCVLMQDGNVIAYASR 863

[Close]

BLAST of Cmc11g0297631 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 6.6e-102
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLR+KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKN KFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 512

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 513 ASRLGLGCVLMQDGNVIAYASR 534

[Close]

BLAST of Cmc11g0297631 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 6.6e-102
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLR+KQ
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 499

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 500 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 559

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKN KFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 560 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 619

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 620 ASRLGLGCVLMQDGNVIAYASR 641

[Close]

BLAST of Cmc11g0297631 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 6.6e-102
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLR+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKN KFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

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BLAST of Cmc11g0297631 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-36
Identity = 80/204 (39.22%), Postives = 123/204 (60.29%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGL NAPA F   MN I    L++  +V++DDI+++S     H   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V++  P    E+R+FLGL  YY 
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQI--FQELKKRLVTTPILALPVTGKDYVIY 180
           +FI +++ +A P  +  +K  K + + K E I  F++LK  ++  PIL LP   K +V+ 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 512

Query: 181 CDASRLGLGCVLMQDGNVIAYASR 203
            DAS L LG VL Q+G+ I++ SR
Sbjct: 513 TDASNLALGAVLSQNGHPISFISR 535

[Close]

BLAST of Cmc11g0297631 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 76/203 (37.44%), Postives = 121/203 (59.61%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGL NAPA F   MN I    L++  +V++DDI+V+S   + H + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           L  +  KCEF  ++  FLGHV++  G+  +P+K+EA+  +  P    E+++FLGL  YY 
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSD-KCEQIFQELKKRLVTTPILALPVTGKDYVIYC 180
           +FI +F+ +A P     +KN K + ++ + +  F++LK  +   PIL +P   K + +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASRLGLGCVLMQDGNVIAYASR 203
           DAS + LG VL QDG+ ++Y SR
Sbjct: 514 DASDVALGAVLSQDGHPLSYISR 536

[Close]

BLAST of Cmc11g0297631 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.8e-33
Identity = 83/217 (38.25%), Postives = 121/217 (55.76%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           +PFGL NAPA+F  +++ I  +++ +   V+IDDI+V+S D + H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           L     K  F   QV FLG++V+A G+  DP+KV A+     P S  E++ FLG+  YY 
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFSRLAFPSIALTR---KNAKFEWSDKCE--------QIFQELKKRLVTTPILALP 180
           +FI+D++++A P   LTR    N K   S K          Q F +LK  L ++ ILA P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 VTGKDYVIYCDASRLGLGCVLMQD----GNVIAYASR 203
              K + +  DAS   +G VL QD       IAY SR
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISR 466

[Close]

BLAST of Cmc11g0297631 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-27
Identity = 68/206 (33.01%), Postives = 106/206 (51.46%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           +PFGL  AP  F  +M   F         +++DD++V     +   ++L  V    R+  
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           L     KC F++ +V FLGH  + KG+  D +K + + N+  P  A   R F+    YY 
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFI++F+  +     L +KN  FEW+D+C++ F  LK +L+   +L  P   K++ I  D
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621

Query: 181 ASRLGLGCVLMQDGN----VIAYASR 203
           AS+   G VL Q+ N     +AYASR
Sbjct: 622 ASKQACGAVLTQNHNGHQLPVAYASR 647

[Close]

BLAST of Cmc11g0297631 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.6e-27
Identity = 70/214 (32.71%), Postives = 111/214 (51.87%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           +PFGL NA ++F   ++ +  + + +   V++DD++++S +   H  H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           +     K  F+ E V +LG +VS  G   DP+KV+A+  +  P    +VRSFLGLA YY 
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIEDFSRLAFPSIALTR-----------KNAKFEWSDKCEQIFQELKKRLVTTP-ILAL 180
            FI+DF+ +A P   + +           K    E+++     FQ L+  L +   IL  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASR 203
           P   K + +  DAS  G+G VL Q+G  I   SR
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISR 522

[Close]

BLAST of Cmc11g0297631 vs. ExPASy TrEMBL
Match: A0A5A7VHT8 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold301G00170 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.2e-109
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ
Sbjct: 548 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 607

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS
Sbjct: 608 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 667

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD
Sbjct: 668 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 727

Query: 181 ASRLGLGCVLMQDGNVIAYAS 202
           ASRLGLGCVLMQDGNVIAYAS
Sbjct: 728 ASRLGLGCVLMQDGNVIAYAS 748

[Close]

BLAST of Cmc11g0297631 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.4e-103
Identity = 191/202 (94.55%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           M FGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKNAKFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 842 ASRLGLGCVLMQDGNVIAYASR 863

[Close]

BLAST of Cmc11g0297631 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.2e-102
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLR+KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKN KFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 920

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 921 ASRLGLGCVLMQDGNVIAYASR 942

[Close]

BLAST of Cmc11g0297631 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.2e-102
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLR+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKN KFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

[Close]

BLAST of Cmc11g0297631 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.2e-102
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREFHKEHLRIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE H+EHLRIVLQTLR+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPASATEVRSFLGLARYYS 120
           LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERP SATEVRSFLGLA YY 
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPILALPVTGKDYVIYCD 180
           RFIEDFSRLA P  ALTRKN KFEWSDKCEQ FQELKKRLVT PILALPVTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 ASRLGLGCVLMQDGNVIAYASR 203
           ASRLGLGCVLMQDGNVIAYASR
Sbjct: 959 ASRLGLGCVLMQDGNVIAYASR 980

[Close]

BLAST of Cmc11g0297631 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-24
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 48  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPAS 107
           HL +VLQ     Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSFLGLARYYSRFIEDFSRLAFPSIALTRKNAKFEWSDKCEQIFQELKKRLVTTPI 167
            TE+R FLGL  YY RF++++ ++  P   L +KN+  +W++     F+ LK  + T P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LALP 170
           LALP
Sbjct: 123 LALP 125

The following BLAST results are available for this feature:

BLAST of Cmc11g0297631 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065345.1	2.5e-109	100.00	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0053222.1	1.7e-102	94.55	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0050493.1	6.6e-102	93.56	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	6.6e-102	93.56	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	6.6e-102	93.56	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0297631 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.9e-36	39.22	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.5e-35	37.44	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	8.8e-33	38.25	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10394	2.5e-27	33.01	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P10401	5.6e-27	32.71	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc11g0297631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHT8	1.2e-109	100.00	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7UBV9	8.4e-103	94.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2V7	3.2e-102	93.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BHI1	3.2e-102	93.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	3.2e-102	93.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]

BLAST of Cmc11g0297631 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.9e-24	41.94	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..202 e-value: 2.9E-15 score: 56.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 4.6E-32 score: 112.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..176 e-value: 5.7E-28 score: 98.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 7.3E-16 score: 58.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 11.376495
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 80..202
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 80..202
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.0642E-36 score: 124.245
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0297631.1	Cmc11g0297631.1	mRNA