Cmc11g0297301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0297301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 16253563 .. 16254921 (+)
RNA-Seq Expression	Cmc11g0297301
Synteny	Cmc11g0297301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATACTAGTGAGGTTGATATGTCCTTGTCACCAGCACCAGTGGTGAGGGACTATTCGGATGTCTTTCCCGAAGAACTTCCAGGGTTACCTCCTCAGAGGGAGATTGAGTTTGCCATAGAACTAGAGTCTGGTACGGTTCCTATATCCAGAGCCCCATACAGAATGGCTCCAGTAGAGTTGAAAGAGCTGAAGGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTTATTCGACCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGTATTGACTACAGAGAGTTGAATAAGGTCACCGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCACTTACAGGGAGCTACAATGTTCTCTAAGATCGACCTTTGGTCAGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAGCCTTTCTTTCCAAATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAATAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGACATTTTGATATATTCTAAGACAGAGGCCGAGCATGAGGGGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTATATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGTAGGTATCCTTTTTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTTAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTACCGACGATTTGTGGAGAACTTTTCGCGTAAAGCTACTCCTCTTACTCATTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCAATGCCTGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTATTGCACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTTTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGATTTACCCTACCCACGATTTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGGTACAGATCTTCACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGAAATTGAATATGAGACAGCGAAGATGGCTTGAATTAGTGAAGGATTACGATTGTGAGATATTGTATCATCCAGGCAAGCGAATGTGGTAG

mRNA sequence

ATGGTGGATACTAGTGAGGTTGATATGTCCTTGTCACCAGCACCAGTGGTGAGGGACTATTCGGATGTCTTTCCCGAAGAACTTCCAGGGTTACCTCCTCAGAGGGAGATTGAGTTTGCCATAGAACTAGAGTCTGGTACGGTTCCTATATCCAGAGCCCCATACAGAATGGCTCCAGTAGAGTTGAAAGAGCTGAAGGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTTATTCGACCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGTATTGACTACAGAGAGTTGAATAAGGTCACCGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCACTTACAGGGAGCTACAATGTTCTCTAAGATCGACCTTTGGTCAGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAGCCTTTCTTTCCAAATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAATAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGACATTTTGATATATTCTAAGACAGAGGCCGAGCATGAGGGGCATTTACGCATGGTATCCTTTTTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTTAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTACCGACGATTTGTGGAGAACTTTTCGCGTAAAGCTACTCCTCTTACTCATTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCAATGCCTGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTATTGCACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTTTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGATTTACCCTACCCACGATTTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGGTACAGATCTTCACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGAAATTGAATATGAGACAGCGAAGATGGCTTGAATTAGTGAAGGATTACGATTGTGAGATATTGTATCATCCAGGCAAGCGAATGTGGTAG

Coding sequence (CDS)

ATGGTGGATACTAGTGAGGTTGATATGTCCTTGTCACCAGCACCAGTGGTGAGGGACTATTCGGATGTCTTTCCCGAAGAACTTCCAGGGTTACCTCCTCAGAGGGAGATTGAGTTTGCCATAGAACTAGAGTCTGGTACGGTTCCTATATCCAGAGCCCCATACAGAATGGCTCCAGTAGAGTTGAAAGAGCTGAAGGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTTATTCGACCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGTATTGACTACAGAGAGTTGAATAAGGTCACCGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCACTTACAGGGAGCTACAATGTTCTCTAAGATCGACCTTTGGTCAGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAGCCTTTCTTTCCAAATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAATAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGACATTTTGATATATTCTAAGACAGAGGCCGAGCATGAGGGGCATTTACGCATGGTATCCTTTTTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTTAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTACCGACGATTTGTGGAGAACTTTTCGCGTAAAGCTACTCCTCTTACTCATTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCAATGCCTGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTATTGCACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTTTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGATTTACCCTACCCACGATTTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGGTACAGATCTTCACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGAAATTGAATATGAGACAGCGAAGATGGCTTGAATTAGTGAAGGATTACGATTGTGAGATATTGTATCATCCAGGCAAGCGAATGTGGTAG

Protein sequence

MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQKKLNMRQRRWLELVKDYDCEILYHPGKRMW

Homology

[Close]

BLAST of Cmc11g0297301 vs. NCBI nr
Match: KAA0032794.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 801.2 bits (2068), Expect = 4.4e-228
Identity = 394/426 (92.49%), Postives = 405/426 (95.07%), Query Frame = 0


Query: 1    MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
            +VDT EVD+SLS  PVVRDYSDVFPEELPGLPP REIEFAIELE GTVPISRAPYRMAP 
Sbjct: 670  VVDTREVDVSLSSEPVVRDYSDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRMAPA 729

Query: 61   ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
            ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 730  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 789

Query: 121  RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAPT
Sbjct: 790  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPT 849

Query: 181  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMVSFLGHVVSKAGVSVDPAK 240
            VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLRMVSFLGHVVSKAGVSVDPAK
Sbjct: 850  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVSFLGHVVSKAGVSVDPAK 909

Query: 241  IEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRKGTPFVWSNACEDSF 300
            IEAVTSWPRPSTVSEVRSFLGL GYYRRFVENFSR ATPLT LTRKG PFVWS ACEDSF
Sbjct: 910  IEAVTSWPRPSTVSEVRSFLGLIGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSF 969

Query: 301  QNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQIYPT 360
            QNLK+KLV APV TVPDGSGSF+IY DASKKGLGCVLMQQGKVVAYASRQLKSHEQ YPT
Sbjct: 970  QNLKKKLVTAPVPTVPDGSGSFMIYGDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPT 1029

Query: 361  HDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQKKLNMRQRRWLELVKDYDCEI 420
            HDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFFT+K+LNMRQRRWL+LVKDYDCEI
Sbjct: 1030 HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTKKELNMRQRRWLDLVKDYDCEI 1089

Query: 421  LYHPGK 427
            LYH GK
Sbjct: 1090 LYHLGK 1095

[Close]

BLAST of Cmc11g0297301 vs. NCBI nr
Match: KAA0036553.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 793.5 bits (2048), Expect = 9.1e-226
Identity = 391/426 (91.78%), Postives = 400/426 (93.90%), Query Frame = 0


Query: 1   MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
           +VDT EVD+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE  TVPISRAPYRMAP 
Sbjct: 411 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPDTVPISRAPYRMAPA 470

Query: 61  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
           ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 471 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 530

Query: 121 RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            IDDLFD LQ AT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAP 
Sbjct: 531 WIDDLFDQLQEATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 590

Query: 181 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMVSFLGHVVSKAGVSVDPAK 240
           VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLR+VSFLGHVVSKAGVSVDPAK
Sbjct: 591 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVSFLGHVVSKAGVSVDPAK 650

Query: 241 IEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRKGTPFVWSNACEDSF 300
           IEAVT W RPSTVSE RSFLGLAGYYRRFVENFS  ATPLT LTRKG PFVWS ACEDSF
Sbjct: 651 IEAVTGWTRPSTVSEFRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSF 710

Query: 301 QNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQIYPT 360
           QNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQ YPT
Sbjct: 711 QNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPT 770

Query: 361 HDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQKKLNMRQRRWLELVKDYDCEI 420
           HDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFFTQK+LNMRQRRWLELVKDYDCEI
Sbjct: 771 HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 830

Query: 421 LYHPGK 427
           LYHPGK
Sbjct: 831 LYHPGK 836

[Close]

BLAST of Cmc11g0297301 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 793.1 bits (2047), Expect = 1.2e-225
Identity = 396/449 (88.20%), Postives = 404/449 (89.98%), Query Frame = 0


Query: 1   MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
           +VDT E D+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE GTVPISRAPYRMAP 
Sbjct: 524 VVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 583

Query: 61  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
           ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 584 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 643

Query: 121 RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
           RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAP 
Sbjct: 644 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 703

Query: 181 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRM------------------- 240
           VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLRM                   
Sbjct: 704 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEF 763

Query: 241 ----VSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKA 300
               VSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENFSR A
Sbjct: 764 WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 823

Query: 301 TPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVL 360
           TPLT LTRKG PFVWS ACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 824 TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 883

Query: 361 MQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFF 420
           MQQGKVVAYASRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFF
Sbjct: 884 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 943

Query: 421 TQKKLNMRQRRWLELVKDYDCEILYHPGK 427
           TQK+LNMRQRRWLELVKDYDCEILYHPGK
Sbjct: 944 TQKELNMRQRRWLELVKDYDCEILYHPGK 972

[Close]

BLAST of Cmc11g0297301 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 792.3 bits (2045), Expect = 2.0e-225
Identity = 396/449 (88.20%), Postives = 404/449 (89.98%), Query Frame = 0


Query: 1    MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
            +VDT EVD+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE GTVPISRAPYRMAP 
Sbjct: 558  VVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 617

Query: 61   ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
            ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 618  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 677

Query: 121  RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAP 
Sbjct: 678  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 737

Query: 181  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRM------------------- 240
            VFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHE HLRM                   
Sbjct: 738  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFLKCEF 797

Query: 241  ----VSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKA 300
                VSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENFSR A
Sbjct: 798  WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 857

Query: 301  TPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVL 360
            TPLT LTRKG PFVWS ACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 858  TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 917

Query: 361  MQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFF 420
            MQQGKVVAYASRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFF
Sbjct: 918  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 977

Query: 421  TQKKLNMRQRRWLELVKDYDCEILYHPGK 427
            TQK+LNMRQRRWLELVKDYDCEILYHPGK
Sbjct: 978  TQKELNMRQRRWLELVKDYDCEILYHPGK 1006

[Close]

BLAST of Cmc11g0297301 vs. NCBI nr
Match: KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 791.2 bits (2042), Expect = 4.5e-225
Identity = 395/449 (87.97%), Postives = 404/449 (89.98%), Query Frame = 0


Query: 1    MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
            +VDT E D+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE GTVPISRAPYRMAP 
Sbjct: 2229 VVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 2288

Query: 61   ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
            ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKN+YPLP
Sbjct: 2289 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKETVKNRYPLP 2348

Query: 121  RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAFLS+YGHYEFIVMSFGLTNAP 
Sbjct: 2349 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFLSRYGHYEFIVMSFGLTNAPA 2408

Query: 181  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRM------------------- 240
            VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLRM                   
Sbjct: 2409 VFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEF 2468

Query: 241  ----VSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKA 300
                VSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENFSR A
Sbjct: 2469 WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 2528

Query: 301  TPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVL 360
            TPLT LTRKG PFVWS ACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 2529 TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 2588

Query: 361  MQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFF 420
            MQQGKVVAYASRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFF
Sbjct: 2589 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 2648

Query: 421  TQKKLNMRQRRWLELVKDYDCEILYHPGK 427
            TQK+LNMRQRRWLELVKDYDCEILYHPGK
Sbjct: 2649 TQKELNMRQRRWLELVKDYDCEILYHPGK 2677

[Close]

BLAST of Cmc11g0297301 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.1e-75
Identity = 149/393 (37.91%), Postives = 229/393 (58.27%), Query Frame = 0


Query: 63  KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNKY 122
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +++
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 123 PLPRIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTN 182
           P+P +D++   L     F+ IDL  G+HQ+ +    V KTAF +K+GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 183 APTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMV--------------- 242
           AP  F   MN + R  L+   +V++DDI+++S +  EH   L +V               
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 243 --------SFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFS 302
                   +FLGHV++  G+  +P KIEA+  +P P+   E+++FLGL GYYR+F+ NF+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 303 RKATPLTHLTRKGTPFVWSNACEDS-FQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGL 362
             A P+T   +K      +N   DS F+ LK  +   P+L VPD +  F + +DAS   L
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVAL 520

Query: 363 GCVLMQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSL 422
           G VL Q G  ++Y SR L  HE  Y T + EL A+V+A K +RHYL G   +I +DH+ L
Sbjct: 521 GAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPL 580

Query: 423 KYFFTQKKLNMRQRRWLELVKDYDCEILYHPGK 427
            + +  K  N +  RW   + ++D +I Y  GK
Sbjct: 581 SWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGK 613

[Close]

BLAST of Cmc11g0297301 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.0e-74
Identity = 146/408 (35.78%), Postives = 232/408 (56.86%), Query Frame = 0


Query: 49  PISRAPYRMAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCI 108
           PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK         R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 109 DYRELNKVTVKNKYPLPRIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKY 168
           DYR+LN++T+ ++YP+P +D++   L     F+ IDL  G+HQ+ + +  + KTAF +K 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 169 GHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMV- 228
           GHYE++ M FGL NAP  F   MN + R  L+   +V++DDI+I+S +  EH   +++V 
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 229 ----------------------SFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL 288
                                 +FLGH+V+  G+  +P K++A+ S+P P+   E+R+FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 289 GLAGYYRRFVENFSRKATPLTHLTRKGTPFVWSNACE--DSFQNLKQKLVIAPVLTVPDG 348
           GL GYYR+F+ N++  A P+T   +K T  + +   E  ++F+ LK  ++  P+L +PD 
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTK-IDTQKLEYIEAFEKLKALIIRDPILQLPDF 505

Query: 349 SGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHY 408
              FV+ +DAS   LG VL Q G  +++ SR L  HE  Y   + EL A+V+A K +RHY
Sbjct: 506 EKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHY 565

Query: 409 LYGEKVQIFTDHKSLKYFFTQKKLNMRQRRWLELVKDYDCEILYHPGK 427
           L G +  I +DH+ L++    K+   +  RW   + +Y  +I Y  GK
Sbjct: 566 LLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGK 612

[Close]

BLAST of Cmc11g0297301 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.4e-72
Identity = 147/453 (32.45%), Postives = 248/453 (54.75%), Query Frame = 0


Query: 19  DYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPVELK-ELKVQLQELLDKGF 78
           ++  +F   L G+  +  ++   E+ + T     A     PV ++ E++ Q+ ELL  G 
Sbjct: 94  EFPRIFEPPLSGMSVETAVK--AEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGI 153

Query: 79  IRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNKVTVKNKYPLPRIDDLFDHLQGA 138
           IRPS SP+ +P+  V KK     +   R+ +D++ LN VT+ + YP+P I+     L  A
Sbjct: 154 IRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNA 213

Query: 139 TMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPTVFMDLMNRVFRE 198
             F+ +DL SG+HQ+ +K+SD+PKTAF +  G YEF+ + FGL NAP +F  +++ + RE
Sbjct: 214 KYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILRE 273

Query: 199 FLDTFVIVFIDDILIYSKTEAEHEGHLRM-----------------------VSFLGHVV 258
            +     V+IDDI+++S+    H  +LR+                       V FLG++V
Sbjct: 274 HIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIV 333

Query: 259 SKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTR---- 318
           +  G+  DP K+ A++  P P++V E++ FLG+  YYR+F++++++ A PLT+LTR    
Sbjct: 334 TADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYA 393

Query: 319 -------KGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLM 378
                     P         SF +LK  L  + +L  P  +  F + +DAS   +G VL 
Sbjct: 394 NIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLS 453

Query: 379 Q----QGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGE-KVQIFTDHKSL 427
           Q    + + +AY SR L   E+ Y T + E+ A++++L   R YLYG   ++++TDH+ L
Sbjct: 454 QDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPL 513

[Close]

BLAST of Cmc11g0297301 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 1.1e-67
Identity = 153/447 (34.23%), Postives = 236/447 (52.80%), Query Frame = 0


Query: 13   PAPVVRDYSDVFPEELPGLPPQRE---IEFAIELESGTVPISRAPYRMAPVELKELKVQL 72
            P  + + Y ++   +LP  P       ++  IE++ G       PY +     +E+   +
Sbjct: 583  PVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIV 642

Query: 73   QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRIDDLFDHL 132
            Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L   +
Sbjct: 643  QKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 702

Query: 133  QGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPTVFMDLMNRV 192
              A +F+ +DL SGYHQ+ ++  D  KTAF++  G YE+ VM FGL NAP+ F   M   
Sbjct: 703  GNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADT 762

Query: 193  FREFLDTFVIVFIDDILIYSKTEAEHEGHLRMV-----------------------SFLG 252
            FR+    FV V++DDILI+S++  EH  HL  V                        FLG
Sbjct: 763  FRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLG 822

Query: 253  HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRK 312
            + +    ++    K  A+  +P P TV + + FLG+  YYRRF+ N S+ A P+      
Sbjct: 823  YSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD 882

Query: 313  GTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK---- 372
             +   W+   + + + LK  L  +PVL   +   ++ + +DASK G+G VL +       
Sbjct: 883  KSQ--WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKL 942

Query: 373  --VVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQK 428
              VV Y S+ L+S ++ YP  +LEL  ++ AL  +R+ L+G+   + TDH SL     + 
Sbjct: 943  VGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKN 1002

[Close]

BLAST of Cmc11g0297301 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 258.5 bits (659), Expect = 1.4e-67
Identity = 153/447 (34.23%), Postives = 235/447 (52.57%), Query Frame = 0


Query: 13  PAPVVRDYSDVFPEELPGLPPQRE---IEFAIELESGTVPISRAPYRMAPVELKELKVQL 72
           P  + + Y ++   +LP  P       ++  IE++ G       PY +     +E+   +
Sbjct: 557 PVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIV 616

Query: 73  QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRIDDLFDHL 132
           Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L   +
Sbjct: 617 QKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 676

Query: 133 QGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPTVFMDLMNRV 192
             A +F+ +DL SGYHQ+ ++  D  KTAF++  G YE+ VM FGL NAP+ F   M   
Sbjct: 677 GNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADT 736

Query: 193 FREFLDTFVIVFIDDILIYSKTEAEHEGHLRMV-----------------------SFLG 252
           FR+    FV V++DDILI+S++  EH  HL  V                        FLG
Sbjct: 737 FRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLG 796

Query: 253 HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRK 312
           + +    ++    K  A+  +P P TV + + FLG+  YYRRF+ N S+ A P+      
Sbjct: 797 YSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD 856

Query: 313 GTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK---- 372
            +   W+   + +   LK  L  +PVL   +   ++ + +DASK G+G VL +       
Sbjct: 857 KSQ--WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKL 916

Query: 373 --VVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQK 428
             VV Y S+ L+S ++ YP  +LEL  ++ AL  +R+ L+G+   + TDH SL     + 
Sbjct: 917 VGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKN 976

[Close]

BLAST of Cmc11g0297301 vs. ExPASy TrEMBL
Match: A0A5D3E456 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00150 PE=4 SV=1)

HSP 1 Score: 801.2 bits (2068), Expect = 2.1e-228
Identity = 394/426 (92.49%), Postives = 405/426 (95.07%), Query Frame = 0


Query: 1    MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
            +VDT EVD+SLS  PVVRDYSDVFPEELPGLPP REIEFAIELE GTVPISRAPYRMAP 
Sbjct: 670  VVDTREVDVSLSSEPVVRDYSDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRMAPA 729

Query: 61   ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
            ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 730  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 789

Query: 121  RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAPT
Sbjct: 790  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPT 849

Query: 181  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMVSFLGHVVSKAGVSVDPAK 240
            VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLRMVSFLGHVVSKAGVSVDPAK
Sbjct: 850  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVSFLGHVVSKAGVSVDPAK 909

Query: 241  IEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRKGTPFVWSNACEDSF 300
            IEAVTSWPRPSTVSEVRSFLGL GYYRRFVENFSR ATPLT LTRKG PFVWS ACEDSF
Sbjct: 910  IEAVTSWPRPSTVSEVRSFLGLIGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSF 969

Query: 301  QNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQIYPT 360
            QNLK+KLV APV TVPDGSGSF+IY DASKKGLGCVLMQQGKVVAYASRQLKSHEQ YPT
Sbjct: 970  QNLKKKLVTAPVPTVPDGSGSFMIYGDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPT 1029

Query: 361  HDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQKKLNMRQRRWLELVKDYDCEI 420
            HDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFFT+K+LNMRQRRWL+LVKDYDCEI
Sbjct: 1030 HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTKKELNMRQRRWLDLVKDYDCEI 1089

Query: 421  LYHPGK 427
            LYH GK
Sbjct: 1090 LYHLGK 1095

[Close]

BLAST of Cmc11g0297301 vs. ExPASy TrEMBL
Match: A0A5A7T0Y9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00570 PE=4 SV=1)

HSP 1 Score: 793.5 bits (2048), Expect = 4.4e-226
Identity = 391/426 (91.78%), Postives = 400/426 (93.90%), Query Frame = 0


Query: 1   MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
           +VDT EVD+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE  TVPISRAPYRMAP 
Sbjct: 411 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPDTVPISRAPYRMAPA 470

Query: 61  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
           ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 471 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 530

Query: 121 RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            IDDLFD LQ AT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAP 
Sbjct: 531 WIDDLFDQLQEATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 590

Query: 181 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMVSFLGHVVSKAGVSVDPAK 240
           VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLR+VSFLGHVVSKAGVSVDPAK
Sbjct: 591 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVSFLGHVVSKAGVSVDPAK 650

Query: 241 IEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATPLTHLTRKGTPFVWSNACEDSF 300
           IEAVT W RPSTVSE RSFLGLAGYYRRFVENFS  ATPLT LTRKG PFVWS ACEDSF
Sbjct: 651 IEAVTGWTRPSTVSEFRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSF 710

Query: 301 QNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQIYPT 360
           QNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQ YPT
Sbjct: 711 QNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPT 770

Query: 361 HDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFFTQKKLNMRQRRWLELVKDYDCEI 420
           HDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFFTQK+LNMRQRRWLELVKDYDCEI
Sbjct: 771 HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 830

Query: 421 LYHPGK 427
           LYHPGK
Sbjct: 831 LYHPGK 836

[Close]

BLAST of Cmc11g0297301 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 793.1 bits (2047), Expect = 5.7e-226
Identity = 396/449 (88.20%), Postives = 404/449 (89.98%), Query Frame = 0


Query: 1   MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
           +VDT E D+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE GTVPISRAPYRMAP 
Sbjct: 524 VVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 583

Query: 61  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
           ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 584 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 643

Query: 121 RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
           RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAP 
Sbjct: 644 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 703

Query: 181 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRM------------------- 240
           VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLRM                   
Sbjct: 704 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEF 763

Query: 241 ----VSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKA 300
               VSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENFSR A
Sbjct: 764 WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 823

Query: 301 TPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVL 360
           TPLT LTRKG PFVWS ACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 824 TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 883

Query: 361 MQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFF 420
           MQQGKVVAYASRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFF
Sbjct: 884 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 943

Query: 421 TQKKLNMRQRRWLELVKDYDCEILYHPGK 427
           TQK+LNMRQRRWLELVKDYDCEILYHPGK
Sbjct: 944 TQKELNMRQRRWLELVKDYDCEILYHPGK 972

[Close]

BLAST of Cmc11g0297301 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 9.8e-226
Identity = 396/449 (88.20%), Postives = 404/449 (89.98%), Query Frame = 0


Query: 1    MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
            +VDT EVD+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE GTVPISRAPYRMAP 
Sbjct: 558  VVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 617

Query: 61   ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
            ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+YPLP
Sbjct: 618  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 677

Query: 121  RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAF S+YGHYEFIVMSFGLTNAP 
Sbjct: 678  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 737

Query: 181  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRM------------------- 240
            VFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHE HLRM                   
Sbjct: 738  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFLKCEF 797

Query: 241  ----VSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKA 300
                VSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENFSR A
Sbjct: 798  WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 857

Query: 301  TPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVL 360
            TPLT LTRKG PFVWS ACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 858  TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 917

Query: 361  MQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFF 420
            MQQGKVVAYASRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFF
Sbjct: 918  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 977

Query: 421  TQKKLNMRQRRWLELVKDYDCEILYHPGK 427
            TQK+LNMRQRRWLELVKDYDCEILYHPGK
Sbjct: 978  TQKELNMRQRRWLELVKDYDCEILYHPGK 1006

[Close]

BLAST of Cmc11g0297301 vs. ExPASy TrEMBL
Match: A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)

HSP 1 Score: 791.2 bits (2042), Expect = 2.2e-225
Identity = 395/449 (87.97%), Postives = 404/449 (89.98%), Query Frame = 0


Query: 1    MVDTSEVDMSLSPAPVVRDYSDVFPEELPGLPPQREIEFAIELESGTVPISRAPYRMAPV 60
            +VDT E D+SLS  PVVRDY DVFPEELPGLPP RE+EFAIELE GTVPISRAPYRMAP 
Sbjct: 2229 VVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 2288

Query: 61   ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLP 120
            ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKN+YPLP
Sbjct: 2289 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKETVKNRYPLP 2348

Query: 121  RIDDLFDHLQGATMFSKIDLWSGYHQLRIKDSDVPKTAFLSKYGHYEFIVMSFGLTNAPT 180
            RIDDLFD LQGAT+FSKIDL SGYHQLRIKD DVPKTAFLS+YGHYEFIVMSFGLTNAP 
Sbjct: 2349 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFLSRYGHYEFIVMSFGLTNAPA 2408

Query: 181  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRM------------------- 240
            VFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHE HLRM                   
Sbjct: 2409 VFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEF 2468

Query: 241  ----VSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKA 300
                VSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENFSR A
Sbjct: 2469 WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 2528

Query: 301  TPLTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVL 360
            TPLT LTRKG PFVWS ACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 2529 TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 2588

Query: 361  MQQGKVVAYASRQLKSHEQIYPTHDLELAAVVFALKIWRHYLYGEKVQIFTDHKSLKYFF 420
            MQQGKVVAYASRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEK+QIFTDHKSLKYFF
Sbjct: 2589 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 2648

Query: 421  TQKKLNMRQRRWLELVKDYDCEILYHPGK 427
            TQK+LNMRQRRWLELVKDYDCEILYHPGK
Sbjct: 2649 TQKELNMRQRRWLELVKDYDCEILYHPGK 2677

[Close]

BLAST of Cmc11g0297301 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 6.4e-20
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 222 VSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRKATP 281
           +++LG  H++S  GVS DPAK+EA+  WP P   +E+R FLGL GYYRRFV+N+ +   P
Sbjct: 30  IAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRP 89

Query: 282 LTHLTRKGTPFVWSNACEDSFQNLKQKLVIAPVLTVPDGSGSFV 324
           LT L +K +   W+     +F+ LK  +   PVL +PD    FV
Sbjct: 90  LTELLKKNS-LKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc11g0297301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032794.1	4.4e-228	92.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gyp...	[more]
KAA0036553.1	9.1e-226	91.78	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	1.2e-225	88.20	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037244.1	2.0e-225	88.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0046094.1	4.5e-225	87.97	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0297301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.1e-75	37.91	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.0e-74	35.78	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	5.4e-72	32.45	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	1.1e-67	34.23	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.4e-67	34.23	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0297301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E456	2.1e-228	92.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold57...	[more]
A0A5A7T0Y9	4.4e-226	91.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5A7U330	5.7e-226	88.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7T190	9.8e-226	88.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5A7TSQ8	2.2e-225	87.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Cmc11g0297301 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.4e-20	44.23	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 117..242 e-value: 9.4E-77 score: 259.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 243..329 e-value: 1.9E-30 score: 106.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 38..177 e-value: 9.4E-77 score: 259.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 49..408
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 49..408
None	No IPR available	CDD	cd01647	RT_LTR	coord: 76..229 e-value: 8.0186E-75 score: 229.79
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 323..428 e-value: 5.79547E-51 score: 166.129
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 92..246 e-value: 6.2E-23 score: 81.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 73..264 score: 12.483441
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 320..416 e-value: 3.6E-33 score: 114.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..422

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0297301.1	Cmc11g0297301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding