Cmc11g0297041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0297041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 15906123 .. 15906563 (-)
RNA-Seq Expression	Cmc11g0297041
Synteny	Cmc11g0297041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGTAGATATCAGTCGAATCCTGGACGTGATCATTGGACAGCCGTTAAAAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTTGTGTATGATTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATCTGATAAAGATGCTAGAAAGTCTACATCGGGATCAGTTTTCACTCTGAATGGAGGAGCAATAGTATGGAGAAGCATAAAACAGTCCTGTATTGTTGACTCCACTATAGAAGCTGAATATGTAGCAACCTGTGAAGTAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTCGTTCCAAATGTGCATCTGCCAATCACCTTATACTGTGACAATAATGGTGCAATTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAACACATTGAATGA

mRNA sequence

ATGGTTAGTAGATATCAGTCGAATCCTGGACGTGATCATTGGACAGCCGTTAAAAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTTGTGTATGATTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATCTGATAAAGATGCTAGAAAGTCTACATCGGGATCAGTTTTCACTCTGAATGGAGGAGCAATAGTATGGAGAAGCATAAAACAGTCCTGTATTGTTGACTCCACTATAGAAGCTGAATATGTAGCAACCTGTGAAGTAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTCGTTCCAAATGTGCATCTGCCAATCACCTTATACTGTGACAATAATGGTGCAATTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAACACATTGAATGA

Coding sequence (CDS)

ATGGTTAGTAGATATCAGTCGAATCCTGGACGTGATCATTGGACAGCCGTTAAAAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTTGTGTATGATTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATCTGATAAAGATGCTAGAAAGTCTACATCGGGATCAGTTTTCACTCTGAATGGAGGAGCAATAGTATGGAGAAGCATAAAACAGTCCTGTATTGTTGACTCCACTATAGAAGCTGAATATGTAGCAACCTGTGAAGTAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTCGTTCCAAATGTGCATCTGCCAATCACCTTATACTGTGACAATAATGGTGCAATTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAACACATTGAATGA

Protein sequence

MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPITLYCDNNGAIANSREPRSHKRGKHIE

Homology

[Close]

BLAST of Cmc11g0297041 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 277.3 bits (708), Expect = 7.4e-71
Identity = 129/146 (88.36%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1    MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
            +VSRYQSNPGRDHWTAVKNILKYLRRT++YMLVY +KDLILTGYTDSDFQSDKDARKSTS
Sbjct: 1128 IVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTS 1187

Query: 61   GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
            GSVFTLNGGA+VWRS+KQ+CI DST+EAEYVA CE AKEAVWL+KFLTDLEVVPN+HLPI
Sbjct: 1188 GSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPI 1247

Query: 121  TLYCDNNGAIANSREPRSHKRGKHIE 147
            TLYCDN+GA+ANS+EPRSHKRGKHIE
Sbjct: 1248 TLYCDNSGAVANSKEPRSHKRGKHIE 1273

[Close]

BLAST of Cmc11g0297041 vs. NCBI nr
Match: KAA0041899.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK17833.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 7.4e-71
Identity = 131/146 (89.73%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSN GRDHWTAVKNILKYLRRTKDYMLVY SKDLILTGYTDSDFQ+DKDARKSTS
Sbjct: 263 IVSRYQSNLGRDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKDARKSTS 322

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GS+FTLNGGA++WRSIKQSCI +ST+EAEYVATCE AKEAVWLKKF TDLEVVPN+HLPI
Sbjct: 323 GSIFTLNGGAVIWRSIKQSCIANSTMEAEYVATCEAAKEAVWLKKFSTDLEVVPNMHLPI 382

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GA+ANSREPRSHKRGKHIE
Sbjct: 383 TLYCDNSGAVANSREPRSHKRGKHIE 408

[Close]

BLAST of Cmc11g0297041 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSNPGRDHWT VKNILKYLRRTKDYMLVY SKDLIL GYTDSDFQ+DKDARKSTS
Sbjct: 180 IVSRYQSNPGRDHWTDVKNILKYLRRTKDYMLVYGSKDLILIGYTDSDFQTDKDARKSTS 239

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GSVFTLNGGA+VWRSIKQSCI DST+E EYVA CE AKEAVWLKKFLTDLE VPN+HLPI
Sbjct: 240 GSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEAAKEAVWLKKFLTDLEGVPNMHLPI 299

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GA+ANSREPRSHKRGKHIE
Sbjct: 300 TLYCDNSGAVANSREPRSHKRGKHIE 325

[Close]

BLAST of Cmc11g0297041 vs. NCBI nr
Match: KAA0058346.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK22493.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSNPGRDHWTAVKNILKYLRRTKDYML+Y SKDLILTGYTD DFQ DKDARKSTS
Sbjct: 30  IVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLLYGSKDLILTGYTDFDFQIDKDARKSTS 89

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GSVFTLNGGA+VWRSIKQSCI DST+E EYVA CE AKEAVWLKKFLTDLEVVPN+H+ I
Sbjct: 90  GSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEGAKEAVWLKKFLTDLEVVPNMHMSI 149

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GAIANSREPRSHKRGKHIE
Sbjct: 150 TLYCDNSGAIANSREPRSHKRGKHIE 175

[Close]

BLAST of Cmc11g0297041 vs. NCBI nr
Match: KAA0032291.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 131/146 (89.73%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSNPGRDHW AVKNILKYLR+TKDYMLVY SKDLILTG+TDSDFQ DKDARKSTS
Sbjct: 295 IVSRYQSNPGRDHWIAVKNILKYLRKTKDYMLVYGSKDLILTGHTDSDFQIDKDARKSTS 354

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GSVFTLNGGA+VWRSIKQSCIV ST+EAEYVA CE AKEAVWLKKFLTDLEVVPN+HL I
Sbjct: 355 GSVFTLNGGAVVWRSIKQSCIVGSTMEAEYVAACEAAKEAVWLKKFLTDLEVVPNMHLSI 414

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GA+ANSREPRSHKRGKHIE
Sbjct: 415 TLYCDNSGAVANSREPRSHKRGKHIE 440

[Close]

BLAST of Cmc11g0297041 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-31
Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1    MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
            +VSR+  NPG++HW AVK IL+YLR T    L +   D IL GYTD+D   D D RKS++
Sbjct: 1135 VVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSST 1194

Query: 61   GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
            G +FT +GGAI W+S  Q C+  ST EAEY+A  E  KE +WLK+FL +L +    ++  
Sbjct: 1195 GYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-- 1254

Query: 121  TLYCDNNGAIANSREPRSHKRGKHIE 147
             +YCD+  AI  S+    H R KHI+
Sbjct: 1255 -VYCDSQSAIDLSKNSMYHARTKHID 1277

[Close]

BLAST of Cmc11g0297041 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 0


Query: 1    MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLI----LTGYTDSDFQSDKDAR 60
            ++SRY S    + W  +K +L+YL+ T D  L++  K+L     + GY DSD+   +  R
Sbjct: 1205 ILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDR 1264

Query: 61   KSTSGSVFTL-NGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPN 120
            KST+G +F + +   I W + +Q+ +  S+ EAEY+A  E  +EA+WLK  LT + +   
Sbjct: 1265 KSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--K 1324

Query: 121  VHLPITLYCDNNGAIANSREPRSHKRGKHIE 147
            +  PI +Y DN G I+ +  P  HKR KHI+
Sbjct: 1325 LENPIKIYEDNQGCISIANNPSCHKRAKHID 1352

[Close]

BLAST of Cmc11g0297041 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-18
Identity = 53/145 (36.55%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 2    VSRYQSNPGRDHWTAVKNILKYLRRTKDY-MLVYDSKDLILTGYTDSDFQSDKDARKSTS 61
            +S+Y   P  DHW A+K +L+YL  T D+ + +     L L  Y+D+D+  D D   ST+
Sbjct: 1252 LSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTN 1311

Query: 62   GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 121
            G +  L    I W S KQ  +V S+ EAEY +    + E  W+   LT+L +   +  P 
Sbjct: 1312 GYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPP 1371

Query: 122  TLYCDNNGAIANSREPRSHKRGKHI 146
             +YCDN GA      P  H R KHI
Sbjct: 1372 VIYCDNVGATYLCANPVFHSRMKHI 1394

[Close]

BLAST of Cmc11g0297041 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-18
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLI-LTGYTDSDFQSDKDARKST 60
           ++S++ S+P   HW A+K +L+YL+ T+ Y L +       L GY+D+D+  D ++R+ST
Sbjct: 30  VLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRST 89

Query: 61  SGSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWL 104
           SG +F LNGG + WRS KQ  +  S+ E EY+A  E  +EAVWL
Sbjct: 90  SGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc11g0297041 vs. ExPASy TrEMBL
Match: A0A5A7TKJ0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00900 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 131/146 (89.73%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSN GRDHWTAVKNILKYLRRTKDYMLVY SKDLILTGYTDSDFQ+DKDARKSTS
Sbjct: 263 IVSRYQSNLGRDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKDARKSTS 322

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GS+FTLNGGA++WRSIKQSCI +ST+EAEYVATCE AKEAVWLKKF TDLEVVPN+HLPI
Sbjct: 323 GSIFTLNGGAVIWRSIKQSCIANSTMEAEYVATCEAAKEAVWLKKFSTDLEVVPNMHLPI 382

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GA+ANSREPRSHKRGKHIE
Sbjct: 383 TLYCDNSGAVANSREPRSHKRGKHIE 408

[Close]

BLAST of Cmc11g0297041 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 129/146 (88.36%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1    MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
            +VSRYQSNPGRDHWTAVKNILKYLRRT++YMLVY +KDLILTGYTDSDFQSDKDARKSTS
Sbjct: 1128 IVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTS 1187

Query: 61   GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
            GSVFTLNGGA+VWRS+KQ+CI DST+EAEYVA CE AKEAVWL+KFLTDLEVVPN+HLPI
Sbjct: 1188 GSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPI 1247

Query: 121  TLYCDNNGAIANSREPRSHKRGKHIE 147
            TLYCDN+GA+ANS+EPRSHKRGKHIE
Sbjct: 1248 TLYCDNSGAVANSKEPRSHKRGKHIE 1273

[Close]

BLAST of Cmc11g0297041 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSNPGRDHWT VKNILKYLRRTKDYMLVY SKDLIL GYTDSDFQ+DKDARKSTS
Sbjct: 180 IVSRYQSNPGRDHWTDVKNILKYLRRTKDYMLVYGSKDLILIGYTDSDFQTDKDARKSTS 239

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GSVFTLNGGA+VWRSIKQSCI DST+E EYVA CE AKEAVWLKKFLTDLE VPN+HLPI
Sbjct: 240 GSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEAAKEAVWLKKFLTDLEGVPNMHLPI 299

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GA+ANSREPRSHKRGKHIE
Sbjct: 300 TLYCDNSGAVANSREPRSHKRGKHIE 325

[Close]

BLAST of Cmc11g0297041 vs. ExPASy TrEMBL
Match: A0A5A7SRW5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G00090 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.2e-70
Identity = 131/146 (89.73%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSNPGRDHW AVKNILKYLR+TKDYMLVY SKDLILTG+TDSDFQ DKDARKSTS
Sbjct: 295 IVSRYQSNPGRDHWIAVKNILKYLRKTKDYMLVYGSKDLILTGHTDSDFQIDKDARKSTS 354

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GSVFTLNGGA+VWRSIKQSCIV ST+EAEYVA CE AKEAVWLKKFLTDLEVVPN+HL I
Sbjct: 355 GSVFTLNGGAVVWRSIKQSCIVGSTMEAEYVAACEAAKEAVWLKKFLTDLEVVPNMHLSI 414

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GA+ANSREPRSHKRGKHIE
Sbjct: 415 TLYCDNSGAVANSREPRSHKRGKHIE 440

[Close]

BLAST of Cmc11g0297041 vs. ExPASy TrEMBL
Match: A0A5A7UW06 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00300 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.2e-70
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSKDLILTGYTDSDFQSDKDARKSTS 60
           +VSRYQSNPGRDHWTAVKNILKYLRRTKDYML+Y SKDLILTGYTD DFQ DKDARKSTS
Sbjct: 30  IVSRYQSNPGRDHWTAVKNILKYLRRTKDYMLLYGSKDLILTGYTDFDFQIDKDARKSTS 89

Query: 61  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 120
           GSVFTLNGGA+VWRSIKQSCI DST+E EYVA CE AKEAVWLKKFLTDLEVVPN+H+ I
Sbjct: 90  GSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEGAKEAVWLKKFLTDLEVVPNMHMSI 149

Query: 121 TLYCDNNGAIANSREPRSHKRGKHIE 147
           TLYCDN+GAIANSREPRSHKRGKHIE
Sbjct: 150 TLYCDNSGAIANSREPRSHKRGKHIE 175

[Close]

BLAST of Cmc11g0297041 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 2   VSRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYDSK-DLILTGYTDSDFQSDKDARKSTS 61
           +S++   P   H  AV  IL Y++ T    L Y S+ ++ L  ++D+ FQS KD R+ST+
Sbjct: 402 LSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTN 461

Query: 62  GSVFTLNGGAIVWRSIKQSCIVDSTIEAEYVATCEVAKEAVWLKKFLTDLEVVPNVHLPI 121
           G    L    I W+S KQ  +  S+ EAEY A      E +WL +F  +L++   +  P 
Sbjct: 462 GYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL--PLSKPT 521

Query: 122 TLYCDNNGAIANSREPRSHKRGKHIE 147
            L+CDN  AI  +     H+R KHIE
Sbjct: 522 LLFCDNTAAIHIATNAVFHERTKHIE 545

The following BLAST results are available for this feature:

BLAST of Cmc11g0297041 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	7.4e-71	88.36	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0041899.1	7.4e-71	89.73	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
TYK06386.1	2.8e-70	89.73	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0058346.1	1.1e-69	89.73	gag/pol protein [Cucumis melo var. makuwa] >TYK22493.1 gag/pol protein [Cucumis ...	[more]
KAA0032291.1	1.1e-69	89.73	gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc11g0297041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.5e-31	47.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.6e-20	37.09	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.8e-18	36.55	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	7.6e-18	43.27	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc11g0297041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKJ0	3.6e-71	89.73	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
E2GK51	3.6e-71	88.36	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3C7T2	1.4e-70	89.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081...	[more]
A0A5A7SRW5	5.2e-70	89.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G0009...	[more]
A0A5A7UW06	5.2e-70	89.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00...	[more]

BLAST of Cmc11g0297041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-17	36.30	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 57..146
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 57..146
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 42..146 e-value: 2.52777E-48 score: 150.311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0297041.1	Cmc11g0297041.1	mRNA