Cmc11g0296661 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0296661
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRING-H2 finger protein ATL18-like
LocationCMiso1.1chr11: 14974205 .. 14974955 (-)
RNA-Seq ExpressionCmc11g0296661
SyntenyCmc11g0296661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAAAGAATATACATACATCTTCCTTGGTTCGTTTTTTTGTTGTTCAAAATTTATCAAAACCATTTTGGCCCACAGAACTCAAGACTCCTTCTTCAACCTATACTCCCAATTATTATATTATATACATATATATAATGGCGATCTAAATCCACTTCTGATCTTTTCGTATCAATAACCTTCTAAACTCTCTCTCTTTGTGTTTGTGTCTTAAATTCCAGACTTCAGTCCAATCGCCAATATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCTGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGATTTGATCCTCTGTACATTTTGCTTTTTGATTTGGAAATTTGTAGTTCTTCAATTTCCATTTATTTCTCTGTA

mRNA sequence

TTTTAAAGAATATACATACATCTTCCTTGGTTCGTTTTTTTGTTGTTCAAAATTTATCAAAACCATTTTGGCCCACAGAACTCAAGACTCCTTCTTCAACCTATACTCCCAATTATTATATTATATACATATATATAATGGCGATCTAAATCCACTTCTGATCTTTTCGTATCAATAACCTTCTAAACTCTCTCTCTTTGTGTTTGTGTCTTAAATTCCAGACTTCAGTCCAATCGCCAATATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCTGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGATTTGATCCTCTGTACATTTTGCTTTTTGATTTGGAAATTTGTAGTTCTTCAATTTCCATTTATTTCTCTGTA

Coding sequence (CDS)

ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCTGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGA

Protein sequence

MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYDEDHGGSSEEICSICLTEFGRSEDSMLLLGRQPQDGHQVEIPRS
Homology
BLAST of Cmc11g0296661 vs. NCBI nr
Match: KAA0047798.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60
          MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD
Sbjct: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60

Query: 61 EDHGGSSEEICSICLTEFGRSEDSMLLL 89
          EDHGGSSEEICSICLTEFGRSEDS+  L
Sbjct: 61 EDHGGSSEEICSICLTEFGRSEDSVCKL 88

BLAST of Cmc11g0296661 vs. NCBI nr
Match: TYK01060.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 5.9e-38
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60
          MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFG PSSPQHGTDLVVVRSYD
Sbjct: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60

Query: 61 EDHGGSSEEICSICLTEFGRSEDSMLLL 89
          EDHGGSSEEICSICLTEFGRSEDS+  L
Sbjct: 61 EDHGGSSEEICSICLTEFGRSEDSVCKL 88

BLAST of Cmc11g0296661 vs. NCBI nr
Match: KAE8646816.1 (hypothetical protein Csa_004847 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0

Query: 11  MRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYDEDHGGSSEEI 70
           MRFPILFF+TFLWIPLFR+ QAILGVVATVFGLPSSP+HGTDL+VVRSYDED GGSSEEI
Sbjct: 1   MRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDED-GGSSEEI 60

Query: 71  CSICLTEFGRSEDSM-LLLGRQPQDGHQVEIPR 103
           CSICLTEFGRS DSM LLL RQPQDGHQVE+PR
Sbjct: 61  CSICLTEFGRSGDSMLLLLRRQPQDGHQVELPR 92

BLAST of Cmc11g0296661 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTD---LVVVR 60
          MLGL +L S +   I+FF+TF+WIPLFR+K+AILG VA+VF L S P+  +     ++VR
Sbjct: 1  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLVSLPEMDSSRGGTLLVR 60

Query: 61 SYDE----DHGGSSEEICSICLTEFGRSEDSMLLL 89
           Y+E    D     EE+CSICLTEF R EDS+  L
Sbjct: 61 RYEELQRSDDRAEEEEMCSICLTEFAR-EDSVCKL 93

BLAST of Cmc11g0296661 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTD---LVVVR 60
          MLGL +L S +   I+FF+TF+WIPLFR+K+AILG VA+VF L S P+  +     ++VR
Sbjct: 1  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLASLPEMDSSRGGTLLVR 60

Query: 61 SYDE----DHGGSSEEICSICLTEFGRSEDSMLLL 89
           Y+E    D     EE+CSICLTEF R EDS+  L
Sbjct: 61 RYEELQRSDDRTEEEEMCSICLTEFAR-EDSVCKL 93

BLAST of Cmc11g0296661 vs. ExPASy TrEMBL
Match: A0A5A7TXY0 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00410 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.7e-39
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60
          MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD
Sbjct: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60

Query: 61 EDHGGSSEEICSICLTEFGRSEDSMLLL 89
          EDHGGSSEEICSICLTEFGRSEDS+  L
Sbjct: 61 EDHGGSSEEICSICLTEFGRSEDSVCKL 88

BLAST of Cmc11g0296661 vs. ExPASy TrEMBL
Match: A0A5D3BPT9 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60
          MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFG PSSPQHGTDLVVVRSYD
Sbjct: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60

Query: 61 EDHGGSSEEICSICLTEFGRSEDSMLLL 89
          EDHGGSSEEICSICLTEFGRSEDS+  L
Sbjct: 61 EDHGGSSEEICSICLTEFGRSEDSVCKL 88

BLAST of Cmc11g0296661 vs. ExPASy TrEMBL
Match: A0A0A0KFW5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0

Query: 11 MRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYDEDHGGSSEEI 70
          MRFPILFF+TFLWIPLFR+ QAILGVVATVFGLPSSP+HGTDL+VVRSYDED GGSSEEI
Sbjct: 1  MRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDED-GGSSEEI 60

Query: 71 CSICLTEFGRSEDSMLLL 89
          CSICLTEFGRS DS+  L
Sbjct: 61 CSICLTEFGRSGDSVCKL 77

BLAST of Cmc11g0296661 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTD---LVVVR 60
          MLGL +L S +   I+FF+TF+WIPLFR+K+AILG VA+VF L S P+  +     ++VR
Sbjct: 1  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLVSLPEMDSSRGGTLLVR 60

Query: 61 SYDE----DHGGSSEEICSICLTEFGRSEDSMLLL 89
           Y+E    D     EE+CSICLTEF R EDS+  L
Sbjct: 61 RYEELQRSDDRAEEEEMCSICLTEFAR-EDSVCKL 93

BLAST of Cmc11g0296661 vs. ExPASy TrEMBL
Match: A0A6J1I5X8 (RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 16 LFFSTFLWIPLFRMKQAILGVVATVFGL---PSSPQHGTDLVVVRSYDE---DHGGSSEE 75
          +FF+T++WIPL R+K AI+G V +VF L   P S       ++VR Y+E    +  + EE
Sbjct: 6  IFFNTYVWIPLLRLKDAIIGGV-SVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRAEEE 65

Query: 76 ICSICLTEFGRSEDSMLLL 89
          ICSICL EF R +   +LL
Sbjct: 66 ICSICLMEFARGDSVCVLL 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047798.11.2e-3896.59RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa][more]
TYK01060.15.9e-3895.45RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa][more]
KAE8646816.11.9e-3689.25hypothetical protein Csa_004847 [Cucumis sativus][more]
XP_022944066.11.8e-1051.58RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin... [more]
XP_023512248.12.3e-1051.58RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TXY05.7e-3996.59RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BPT92.8e-3895.45RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0KFW52.0e-2887.18RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 P... [more]
A0A6J1FTE68.6e-1151.58RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ... [more]
A0A6J1I5X82.4e-0544.30RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0296661.1Cmc11g0296661.1mRNA