Cmc11g0296491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0296491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr11: 14721291 .. 14721671 (-)
RNA-Seq Expression	Cmc11g0296491
Synteny	Cmc11g0296491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATAGACCAAATATTGCCTACGCTGTGGGCATATGTGCTTGGTTTCAATCTGATCCTCGTGTTTCACATCTTGCTGAAGTTAAAAGAATTATAAAATATGTTCATGGCACAAGTGAGTTTGGAGTATTATACTCTTATGCTACAAATTCAACTCTTGTTGGCTACTGTGATGCAAATTGGGCAGGATGCTCAAATGATAGGAAAAGCACTTCAAGAGGATGTTTCTTTCTTGGTAACAATTTAATCTCTTGGTTCAGTAAGAAGCAAAATTGTGTTTCATTATCTACAGCAGAGAAAGAATATATTGAAGTAGGGAGTTGGTGTATTCAGTTTATATGGATGAAACAGATGCTCCAAGAATATGGTATTCAATAG

mRNA sequence

ATGGCCAATAGACCAAATATTGCCTACGCTGTGGGCATATGTGCTTGGTTTCAATCTGATCCTCGTGTTTCACATCTTGCTGAAGTTAAAAGAATTATAAAATATGTTCATGGCACAAGTGAGTTTGGAGTATTATACTCTTATGCTACAAATTCAACTCTTGTTGGCTACTGTGATGCAAATTGGGCAGGATGCTCAAATGATAGGAAAAGCACTTCAAGAGGATGTTTCTTTCTTGGTAACAATTTAATCTCTTGGTTCAGTAAGAAGCAAAATTGTGTTTCATTATCTACAGCAGAGAAAGAATATATTGAAGTAGGGAGTTGGTGTATTCAGTTTATATGGATGAAACAGATGCTCCAAGAATATGGTATTCAATAG

Coding sequence (CDS)

ATGGCCAATAGACCAAATATTGCCTACGCTGTGGGCATATGTGCTTGGTTTCAATCTGATCCTCGTGTTTCACATCTTGCTGAAGTTAAAAGAATTATAAAATATGTTCATGGCACAAGTGAGTTTGGAGTATTATACTCTTATGCTACAAATTCAACTCTTGTTGGCTACTGTGATGCAAATTGGGCAGGATGCTCAAATGATAGGAAAAGCACTTCAAGAGGATGTTTCTTTCTTGGTAACAATTTAATCTCTTGGTTCAGTAAGAAGCAAAATTGTGTTTCATTATCTACAGCAGAGAAAGAATATATTGAAGTAGGGAGTTGGTGTATTCAGTTTATATGGATGAAACAGATGCTCCAAGAATATGGTATTCAATAG

Protein sequence

MANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQEYGIQ

Homology

[Close]

BLAST of Cmc11g0296491 vs. NCBI nr
Match: KAA0037649.1 (uncharacterized protein E6C27_scaffold277G003120 [Cucumis melo var. makuwa] >TYK22794.1 uncharacterized protein E5676_scaffold311G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 92/125 (73.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDA 60
           +A+RP+IAYA+ ICA +QSDPR+SHL  VKRIIKYVHGT++FG+LY Y T+S LVGYCDA
Sbjct: 9   IASRPDIAYAMEICARYQSDPRISHLNAVKRIIKYVHGTTDFGILYFYDTSSELVGYCDA 68

Query: 61  NWAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQML 120
           +W G ++D+KSTS GCFFLGNNL+SWFSKKQNC+SLSTAE EYI VGS C Q IWMK ML
Sbjct: 69  DWPGSADDQKSTSGGCFFLGNNLVSWFSKKQNCISLSTAEAEYIAVGSGCTQMIWMKNML 128

Query: 121 QEYGI 126
            EYGI
Sbjct: 129 NEYGI 133

[Close]

BLAST of Cmc11g0296491 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 7.6e-48
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 2   ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
           A+RPNIAY VGICA +Q+DPR++HL  VKRI+KYVHGTS+FG++YSY T   LVGYCDA+
Sbjct: 78  ASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFGMMYSYDTTPFLVGYCDAD 137

Query: 62  WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
           WAG ++DRKSTS GCFFLGNNLISW SKKQNCVSLST E EYI  GS C Q IWMK ML 
Sbjct: 138 WAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGCTQLIWMKNMLH 197

Query: 122 EYG 125
           EYG
Sbjct: 198 EYG 200

[Close]

BLAST of Cmc11g0296491 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 2   ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
           A+RP+IAYAVGICA +Q+DPR+SHL  VKRI+KYVHGT++FG++YSY T  TLVGYCDA+
Sbjct: 194 ASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSYDTTPTLVGYCDAD 253

Query: 62  WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
           WAG ++DRKSTS GCFFLGNNLI W SKKQNCVSLST E EYI  GS C Q IWM+ +L 
Sbjct: 254 WAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEYIVAGSGCTQLIWMENILD 313

Query: 122 EYG 125
           EYG
Sbjct: 314 EYG 316

[Close]

BLAST of Cmc11g0296491 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 84/125 (67.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 2    ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
            A+RP+I YAVG+CA +Q++P++SHL +VKRI+KYV+GTS++G++Y + +N  LVGYCDA+
Sbjct: 1366 ASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDAD 1425

Query: 62   WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
            WAG ++DRKSTS GCF+LGNNLISWFSKKQNCVSLSTAE EYI  GS C Q +WMKQML+
Sbjct: 1426 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 1485

Query: 122  EYGIQ 127
            EY ++
Sbjct: 1486 EYNVE 1490

[Close]

BLAST of Cmc11g0296491 vs. NCBI nr
Match: AAO73527.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 84/125 (67.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 2    ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
            A+RP+I YAVG+CA +Q++P++SHL +VKRI+KYV+GTS++G++Y + +N  LVGYCDA+
Sbjct: 1368 ASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDAD 1427

Query: 62   WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
            WAG ++DRKSTS GCF+LGNNLISWFSKKQNCVSLSTAE EYI  GS C Q +WMKQML+
Sbjct: 1428 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 1487

Query: 122  EYGIQ 127
            EY ++
Sbjct: 1488 EYNVE 1492

[Close]

BLAST of Cmc11g0296491 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-19
Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 1   MANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDA 60
           +  RP++A AVG+ + F SDP  +H   +KR+++Y+  T  +G+ ++ A  + LVGY DA
Sbjct: 18  VVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDA 77

Query: 61  NWAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWM 117
           +WAG    R+STS   F L    +SW SKKQ  V+LS+ E EY+ +     + +W+
Sbjct: 78  DWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc11g0296491 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 1    MANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDA 60
            +  RP+IA+AVG+ + F  +P   H   VK I++Y+ GT+   + +   ++  L GY DA
Sbjct: 1123 VCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTDA 1182

Query: 61   NWAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQML 120
            + AG  ++RKS++   F      ISW SK Q CV+LST E EYI       + IW+K+ L
Sbjct: 1183 DMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFL 1242

Query: 121  QEYGI 126
            QE G+
Sbjct: 1243 QELGL 1246

[Close]

BLAST of Cmc11g0296491 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.5e-17
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 4    RPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWA 63
            RP+I+YAV   + F   P   HL  +KRI++Y+ GT   G+        +L  Y DA+WA
Sbjct: 1259 RPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWA 1318

Query: 64   GCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQEY 123
            G  +D  ST+    +LG++ ISW SKKQ  V  S+ E EY  V +   +  W+  +L E 
Sbjct: 1319 GDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTEL 1378

Query: 124  GIQ 127
            GI+
Sbjct: 1379 GIR 1381

[Close]

BLAST of Cmc11g0296491 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.5e-17
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 4   RPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWA 63
           RP+I+YAV I      +P ++    +KR+++YV GT   G+     +   +  +CD++WA
Sbjct: 114 RPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWA 173

Query: 64  GCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIW 116
           GC++ R+ST+  C FLG N+ISW +K+Q  VS S+ E EY  +     +  W
Sbjct: 174 GCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0296491 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-16
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 4    RPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWA 63
            RP+++YAV   + +   P   H   +KR+++Y+ GT + G+        +L  Y DA+WA
Sbjct: 1242 RPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWA 1301

Query: 64   GCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQEY 123
            G ++D  ST+    +LG++ ISW SKKQ  V  S+ E EY  V +   +  W+  +L E 
Sbjct: 1302 GDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTEL 1361

Query: 124  GIQ 127
            GIQ
Sbjct: 1362 GIQ 1364

[Close]

BLAST of Cmc11g0296491 vs. ExPASy TrEMBL
Match: A0A5D3DGP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00320 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.7e-49
Identity = 92/125 (73.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDA 60
           +A+RP+IAYA+ ICA +QSDPR+SHL  VKRIIKYVHGT++FG+LY Y T+S LVGYCDA
Sbjct: 9   IASRPDIAYAMEICARYQSDPRISHLNAVKRIIKYVHGTTDFGILYFYDTSSELVGYCDA 68

Query: 61  NWAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQML 120
           +W G ++D+KSTS GCFFLGNNL+SWFSKKQNC+SLSTAE EYI VGS C Q IWMK ML
Sbjct: 69  DWPGSADDQKSTSGGCFFLGNNLVSWFSKKQNCISLSTAEAEYIAVGSGCTQMIWMKNML 128

Query: 121 QEYGI 126
            EYGI
Sbjct: 129 NEYGI 133

[Close]

BLAST of Cmc11g0296491 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 2   ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
           A+RPNIAY VGICA +Q+DPR++HL  VKRI+KYVHGTS+FG++YSY T   LVGYCDA+
Sbjct: 78  ASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFGMMYSYDTTPFLVGYCDAD 137

Query: 62  WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
           WAG ++DRKSTS GCFFLGNNLISW SKKQNCVSLST E EYI  GS C Q IWMK ML 
Sbjct: 138 WAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGCTQLIWMKNMLH 197

Query: 122 EYG 125
           EYG
Sbjct: 198 EYG 200

[Close]

BLAST of Cmc11g0296491 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.3e-47
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 2   ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
           A+RP+IAYAVGICA +Q+DPR+SHL  VKRI+KYVHGT++FG++YSY T  TLVGYCDA+
Sbjct: 194 ASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFGMMYSYDTTPTLVGYCDAD 253

Query: 62  WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
           WAG ++DRKSTS GCFFLGNNLI W SKKQNCVSLST E EYI  GS C Q IWM+ +L 
Sbjct: 254 WAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEYIVAGSGCTQLIWMENILD 313

Query: 122 EYG 125
           EYG
Sbjct: 314 EYG 316

[Close]

BLAST of Cmc11g0296491 vs. ExPASy TrEMBL
Match: A0A5D3B7L1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002300 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.1e-47
Identity = 90/124 (72.58%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 2   ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
           A+RP+IAY VGICA +QSDPR SHL  VKR+IKYVHGT++FG+LYSY T+  LVGYC A+
Sbjct: 10  ASRPDIAYVVGICARYQSDPRTSHLNAVKRMIKYVHGTTDFGILYSYDTSFELVGYCVAD 69

Query: 62  WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
           WAG  +DRK TS GCFFLGNN++SWFSKKQNCVSLST E EYI VGS C Q +WMK ML 
Sbjct: 70  WAGSVHDRKITSGGCFFLGNNIVSWFSKKQNCVSLSTVEAEYIAVGSGCTQMLWMKNMLN 129

Query: 122 EYGI 126
           EYGI
Sbjct: 130 EYGI 133

[Close]

BLAST of Cmc11g0296491 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.1e-47
Identity = 84/125 (67.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 2    ANRPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDAN 61
            A+RP+I YAVG+CA +Q++P++SHL +VKRI+KYV+GTS++G++Y + +N  LVGYCDA+
Sbjct: 1366 ASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDAD 1425

Query: 62   WAGCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQ 121
            WAG ++DRKSTS GCF+LGNNLISWFSKKQNCVSLSTAE EYI  GS C Q +WMKQML+
Sbjct: 1426 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 1485

Query: 122  EYGIQ 127
            EY ++
Sbjct: 1486 EYNVE 1490

[Close]

BLAST of Cmc11g0296491 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 87.8 bits (216), Expect = 6.7e-18
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 4   RPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWA 63
           R +I++AV   + F   PR++H   V +I+ Y+ GT   G+ YS      L  + DA++ 
Sbjct: 392 RLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQ 451

Query: 64  GCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIWMKQMLQE 123
            C + R+ST+  C FLG +LISW SKKQ  VS S+AE EY  +     + +W+ Q  +E
Sbjct: 452 SCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRE 510

[Close]

BLAST of Cmc11g0296491 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 6.7e-18
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 4   RPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWA 63
           RP+I+YAV I      +P ++    +KR+++YV GT   G+     +   +  +CD++WA
Sbjct: 114 RPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWA 173

Query: 64  GCSNDRKSTSRGCFFLGNNLISWFSKKQNCVSLSTAEKEYIEVGSWCIQFIW 116
           GC++ R+ST+  C FLG N+ISW +K+Q  VS S+ E EY  +     +  W
Sbjct: 174 GCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc11g0296491 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 26/82 (31.71%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 4  RPNIAYAVGICAWFQSDPRVSHLAEVKRIIKYVHGTSEFGVLYSYATNSTLVGYCDANWA 63
          RP++ +AV   + F S  R + +  V +++ YV GT   G+ YS  ++  L  + D++WA
Sbjct: 7  RPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWA 66

Query: 64 GCSNDRKSTSRGC-----FFLG 81
           C + R+S +  C     +FLG
Sbjct: 67 SCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc11g0296491 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037649.1	2.0e-48	73.60	uncharacterized protein E6C27_scaffold277G003120 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0055610.1	7.6e-48	73.98	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
TYK23188.1	1.1e-46	72.36	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
AAO73521.1	1.9e-46	67.20	gag-pol polyprotein [Glycine max]	[more]
AAO73527.1	1.9e-46	67.20	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc11g0296491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	2.0e-19	38.79	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	1.1e-17	39.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	5.5e-17	38.21	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	9.5e-17	36.61	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	3.6e-16	35.77	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0296491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DGP4	9.7e-49	73.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DLL1	3.7e-48	73.98	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5D3DI97	5.3e-47	72.36	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5D3B7L1	9.1e-47	72.58	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G...	[more]
Q84VI4	9.1e-47	67.20	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc11g0296491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.7e-18	37.82	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.7e-18	36.61	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.8e-07	31.71	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..73
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 4..73
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 55..126 e-value: 1.61154E-32 score: 109.48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0296491.1	Cmc11g0296491.1	mRNA