Cmc11g0296281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0296281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 14406362 .. 14407201 (+)
RNA-Seq Expression	Cmc11g0296281
Synteny	Cmc11g0296281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTTGCACAACGTTTCTTGCACACATCGTAGTAGTGCAGAGAGAAAAGCTAAAGCCAGAAGATGTTCCCGTGGTGAAAGAGTTTCATAAAGTATTTCCAGATGATTTGTCAGGTTTGCTACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGGAACAGCACCTATTTCACAGGCACCGTATAGAATGGCTCCAAGCGAGCTTAAAGAATGGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACACCAGGCCCAGTATTTCACCGTGGGGAGCACCAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCAATGACTTATTTTATCAACTAAGGGGAGCAGCATTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTCAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACAAATGCGCCAACGATTTTCATGAATCTCATGAATAGGATCTTCCATCAGTATTTAAATCAGTTTGTGATCGTGTTCATTGATGATATATTAGTTTACTCGATTGATAGAGAAGCCCATAAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCACCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGGGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTCCATTGA

mRNA sequence

ATGAAGGGTTGCACAACGTTTCTTGCACACATCGTAGTAGTGCAGAGAGAAAAGCTAAAGCCAGAAGATGTTCCCGTGGTGAAAGAGTTTCATAAAGTATTTCCAGATGATTTGTCAGGTTTGCTACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGGAACAGCACCTATTTCACAGGCACCGTATAGAATGGCTCCAAGCGAGCTTAAAGAATGGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACACCAGGCCCAGTATTTCACCGTGGGGAGCACCAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCAATGACTTATTTTATCAACTAAGGGGAGCAGCATTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTCAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACAAATGCGCCAACGATTTTCATGAATCTCATGAATAGGATCTTCCATCAGTATTTAAATCAGTTTGTGATCGTGTTCATTGATGATATATTAGTTTACTCGATTGATAGAGAAGCCCATAAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCACCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGGGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTCCATTGA

Coding sequence (CDS)

ATGAAGGGTTGCACAACGTTTCTTGCACACATCGTAGTAGTGCAGAGAGAAAAGCTAAAGCCAGAAGATGTTCCCGTGGTGAAAGAGTTTCATAAAGTATTTCCAGATGATTTGTCAGGTTTGCTACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGGAACAGCACCTATTTCACAGGCACCGTATAGAATGGCTCCAAGCGAGCTTAAAGAATGGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACACCAGGCCCAGTATTTCACCGTGGGGAGCACCAGTGCTATTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCAATGACTTATTTTATCAACTAAGGGGAGCAGCATTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTCAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACAAATGCGCCAACGATTTTCATGAATCTCATGAATAGGATCTTCCATCAGTATTTAAATCAGTTTGTGATCGTGTTCATTGATGATATATTAGTTTACTCGATTGATAGAGAAGCCCATAAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCACCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGGGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTCCATTGA

Protein sequence

MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPISQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQLYAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH

Homology

[Close]

BLAST of Cmc11g0296281 vs. NCBI nr
Match: KAA0060852.1 (hypothetical protein E6C27_scaffold137G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 545.0 bits (1403), Expect = 3.7e-151
Identity = 266/269 (98.88%), Postives = 267/269 (99.26%), Query Frame = 0


Query: 1   MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPI 60
           MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPI
Sbjct: 424 MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPI 483

Query: 61  SQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNK 120
           SQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNK
Sbjct: 484 SQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNK 543

Query: 121 VTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 180
           VTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV
Sbjct: 544 VTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 603

Query: 181 MPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQ 240
           MPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQ
Sbjct: 604 MPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQ 663

Query: 241 LYAKFTKCEFWLEQVVFLGHVVSAKGVSV 270
           LYAKFTKCEFWLEQVVFLGHVVSAKG  +
Sbjct: 664 LYAKFTKCEFWLEQVVFLGHVVSAKGARI 692

[Close]

BLAST of Cmc11g0296281 vs. NCBI nr
Match: KAA0062270.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 526.2 bits (1354), Expect = 1.8e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCTTFLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 498 KGCTTFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 557

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 558 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 617

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGA LFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 618 TIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 677

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 678 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 737

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 738 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 775

[Close]

BLAST of Cmc11g0296281 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 525.8 bits (1353), Expect = 2.3e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCT FLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 600 KGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 659

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 660 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 719

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 720 TIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 779

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 780 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 839

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 840 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 877

[Close]

BLAST of Cmc11g0296281 vs. NCBI nr
Match: TYK06334.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 525.8 bits (1353), Expect = 2.3e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCT FLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 562 KGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 621

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 622 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 681

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 682 TIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 741

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 742 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 801

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 802 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 839

[Close]

BLAST of Cmc11g0296281 vs. NCBI nr
Match: KAA0037582.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 525.8 bits (1353), Expect = 2.3e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCT FLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 184 KGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 243

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 244 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 303

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 304 TIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 363

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 364 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 423

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 424 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 461

[Close]

BLAST of Cmc11g0296281 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 183.0 bits (463), Expect = 4.8e-45
Identity = 95/231 (41.13%), Postives = 138/231 (59.74%), Query Frame = 0


Query: 47  IEFTIELLPGTAPISQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKD 106
           ++  IE+ PG       PY +     +E    +Q+L+D  +  PS SP  +PV+ V KKD
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 107 GTLRLCIDYRQLNKVTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAK 166
           GT RLC+DYR LNK TI + +PLPRI++L  ++  A +F+ +DL SGYHQ+ +   D  K
Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 703

Query: 167 TAFRTRYGHYEFRVMPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHK 226
           TAF T  G YE+ VMPFGL NAP+ F   M   F     +FV V++DDIL++S   E H 
Sbjct: 704 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHW 763

Query: 227 EHLRIVLQTLRDKQLYAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV 278
           +HL  VL+ L+++ L  K  KC+F  E+  FLG+ +  + ++    K  A+
Sbjct: 764 KHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAI 812

[Close]

BLAST of Cmc11g0296281 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 4.8e-45
Identity = 95/231 (41.13%), Postives = 138/231 (59.74%), Query Frame = 0


Query: 47  IEFTIELLPGTAPISQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKD 106
           ++  IE+ PG       PY +     +E    +Q+L+D  +  PS SP  +PV+ V KKD
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 107 GTLRLCIDYRQLNKVTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAK 166
           GT RLC+DYR LNK TI + +PLPRI++L  ++  A +F+ +DL SGYHQ+ +   D  K
Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 729

Query: 167 TAFRTRYGHYEFRVMPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHK 226
           TAF T  G YE+ VMPFGL NAP+ F   M   F     +FV V++DDIL++S   E H 
Sbjct: 730 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHW 789

Query: 227 EHLRIVLQTLRDKQLYAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV 278
           +HL  VL+ L+++ L  K  KC+F  E+  FLG+ +  + ++    K  A+
Sbjct: 790 KHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAI 838

[Close]

BLAST of Cmc11g0296281 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-44
Identity = 99/255 (38.82%), Postives = 149/255 (58.43%), Query Frame = 0


Query: 29  EFHKVFPDDLSGLLPDREIEFTIELLPGTA-PISQAPYRMAPSELKEWKMQLQELVDKGY 88
           EF ++F   LSG+  +  ++   E+   T  PI    Y    +   E + Q+ EL+  G 
Sbjct: 94  EFPRIFEPPLSGMSVETAVK--AEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGI 153

Query: 89  TRPSISPWGAPVLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRINDLFYQLRGA 148
            RPS SP+ +P+  V KK     +   R+ +D+++LN VTI + YP+P IN     L  A
Sbjct: 154 IRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNA 213

Query: 149 ALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTNAPTIFMNLMNRIFHQ 208
             F+ +DL SG+HQ+ ++ESDI KTAF T  G YEF  +PFGL NAP IF  +++ I  +
Sbjct: 214 KYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILRE 273

Query: 209 YLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQLYAKFTKCEFWLEQVVFLGHVV 268
           ++ +   V+IDDI+V+S D + H ++LR+VL +L    L     K  F   QV FLG++V
Sbjct: 274 HIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIV 333

Query: 269 SAKGVSVDPQKVEAV 278
           +A G+  DP+KV A+
Sbjct: 334 TADGIKADPKKVRAI 346

[Close]

BLAST of Cmc11g0296281 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.5e-43
Identity = 87/226 (38.50%), Postives = 137/226 (60.62%), Query Frame = 0


Query: 58  APISQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKD-----GTLRLC 117
           +PI    Y +A +   E + Q+QE++++G  R S SP+ +P   V KK         R+ 
Sbjct: 205 SPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVV 264

Query: 118 IDYRQLNKVTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTR 177
           IDYR+LN++TI ++YP+P ++++  +L     F+ IDL  G+HQ+++ E  I+KTAF T+
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 178 YGHYEFRVMPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIV 237
            GHYE+  MPFGL NAP  F   MN I    LN+  +V++DDI+++S     H   +++V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 238 LQTLRDKQLYAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV 279
              L D  L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

[Close]

BLAST of Cmc11g0296281 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.4e-42
Identity = 78/210 (37.14%), Postives = 133/210 (63.33%), Query Frame = 0


Query: 73  KEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKY 132
           +E + Q+Q+++++G  R S SP+ +P+  V KK         R+ IDYR+LN++T+ +++
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 133 PLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLTN 192
           P+P ++++  +L     F+ IDL  G+HQ+++    ++KTAF T++GHYE+  MPFGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 193 APTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQLYAKFTK 252
           AP  F   MN I    LN+  +V++DDI+V+S   + H + L +V + L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 253 CEFWLEQVVFLGHVVSAKGVSVDPQKVEAV 278
           CEF  ++  FLGHV++  G+  +P+K+EA+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAI 430

[Close]

BLAST of Cmc11g0296281 vs. ExPASy TrEMBL
Match: A0A5A7UY83 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00870 PE=4 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.8e-151
Identity = 266/269 (98.88%), Postives = 267/269 (99.26%), Query Frame = 0


Query: 1   MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPI 60
           MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPI
Sbjct: 424 MKGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPI 483

Query: 61  SQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNK 120
           SQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNK
Sbjct: 484 SQAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNK 543

Query: 121 VTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 180
           VTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV
Sbjct: 544 VTIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 603

Query: 181 MPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQ 240
           MPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQ
Sbjct: 604 MPFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQ 663

Query: 241 LYAKFTKCEFWLEQVVFLGHVVSAKGVSV 270
           LYAKFTKCEFWLEQVVFLGHVVSAKG  +
Sbjct: 664 LYAKFTKCEFWLEQVVFLGHVVSAKGARI 692

[Close]

BLAST of Cmc11g0296281 vs. ExPASy TrEMBL
Match: A0A5A7V4W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00400 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.5e-146
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCTTFLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 498 KGCTTFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 557

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 558 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 617

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGA LFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 618 TIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 677

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 678 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 737

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 738 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 775

[Close]

BLAST of Cmc11g0296281 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.1e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCT FLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 562 KGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 621

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 622 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 681

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 682 TIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 741

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 742 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 801

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 802 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 839

[Close]

BLAST of Cmc11g0296281 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.1e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCT FLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 600 KGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 659

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 660 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 719

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 720 TIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 779

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 780 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 839

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 840 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 877

[Close]

BLAST of Cmc11g0296281 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.1e-145
Identity = 258/278 (92.81%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 2   KGCTTFLAHIVVVQREKLKPEDVPVVKEFHKVFPDDLSGLLPDREIEFTIELLPGTAPIS 61
           KGCT FLAHIVVVQREKLKPEDVPVVKEF  VFPDDLSGL PDREIEFTIELLPGTAPIS
Sbjct: 600 KGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPIS 659

Query: 62  QAPYRMAPSELKEWKMQLQELVDKGYTRPSISPWGAPVLFVKKKDGTLRLCIDYRQLNKV 121
           QAPYRMAPSELKE KMQLQELVDKGY RPS+SPWGAPVLFVKKKDGTLRLCIDYRQLNKV
Sbjct: 660 QAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKV 719

Query: 122 TIRNKYPLPRINDLFYQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 181
           TIRNKYPLPRI+DLF QLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM
Sbjct: 720 TIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVM 779

Query: 182 PFGLTNAPTIFMNLMNRIFHQYLNQFVIVFIDDILVYSIDREAHKEHLRIVLQTLRDKQL 241
           PFGLTNAP +FM+LMNRIFH+YL+QFVIVFIDDILVYS+DRE+H+EHLRIVLQTLR+KQL
Sbjct: 780 PFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQL 839

Query: 242 YAKFTKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVH 280
           YAKF+KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVV+
Sbjct: 840 YAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN 877

[Close]

BLAST of Cmc11g0296281 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-06
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 228 HLRIVLQTLRDKQLYAKFTKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVV 279
           HL +VLQ     Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMV 55

The following BLAST results are available for this feature:

BLAST of Cmc11g0296281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060852.1	3.7e-151	98.88	hypothetical protein E6C27_scaffold137G00870 [Cucumis melo var. makuwa]	[more]
KAA0062270.1	1.8e-145	92.81	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.3e-145	92.81	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]
TYK06334.1	2.3e-145	92.81	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0037582.1	2.3e-145	92.81	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0296281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.8e-45	41.13	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.8e-45	41.13	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	1.4e-44	38.82	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	4.5e-43	38.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	8.4e-42	37.14	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc11g0296281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY83	1.8e-151	98.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7V4W9	8.5e-146	92.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7U2V7	1.1e-145	92.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	1.1e-145	92.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	1.1e-145	92.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc11g0296281 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.4e-06	47.17	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 47..187 e-value: 1.4E-90 score: 304.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 59..277
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 59..277
None	No IPR available	CDD	cd01647	RT_LTR	coord: 86..262 e-value: 2.309E-91 score: 266.383
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 127..262 e-value: 1.4E-90 score: 304.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 102..261 e-value: 1.1E-28 score: 100.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 83..262 score: 14.533341
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 26..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0296281.1	Cmc11g0296281.1	mRNA