Cmc11g0295841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0295841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 13555043 .. 13555474 (-)
RNA-Seq Expression	Cmc11g0295841
Synteny	Cmc11g0295841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGAACAACTGAAACTCAGAATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTGTGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAGCTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTATTGGAAAAGGTCTTAGAGCCAAAACATCTTTAGAGCTTGTACATTCGGACCTCTGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATAAATCAGGTAAAACAATAAAGACACTTTGA

mRNA sequence

ATGTTTAGAACAACTGAAACTCAGAATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTGTGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAGCTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTATTGGAAAAGGTCTTAGAGCCAAAACATCTTTAGAGCTTGTACATTCGGACCTCTGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATAAATCAGGTAAAACAATAAAGACACTTTGA

Coding sequence (CDS)

ATGTTTAGAACAACTGAAACTCAGAATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTGTGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAGCTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTATTGGAAAAGGTCTTAGAGCCAAAACATCTTTAGAGCTTGTACATTCGGACCTCTGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATAAATCAGGTAAAACAATAAAGACACTTTGA

Protein sequence

MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENKSGKTIKTL

Homology

[Close]

BLAST of Cmc11g0295841 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 261.2 bits (666), Expect = 5.4e-66
Identity = 125/143 (87.41%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGK 60
           MFRT ETQNK+QKVSSNA+LWHLRLGHINLNRI RLVKSG+L+QLED+SLPPC+SCLEGK
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 120
           MTKRSF GKGLRAK  LELVHSDLCGPMNVKARGGYEYFISFIDD+SRYGHVYL+ +KS+
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSE 544

Query: 121 SFEKFKEYKAEVENKSGKTIKTL 144
           SFEKFKEYKAEVEN+ GKTIKTL
Sbjct: 545 SFEKFKEYKAEVENEIGKTIKTL 567

[Close]

BLAST of Cmc11g0295841 vs. NCBI nr
Match: KAA0050872.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGK 60
           +FR  +TQNKRQKVS NAFLWHLRLGHINLN IGRLVKSGLLSQLED+SLPPCDSCLEGK
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 120
           MT+RSF  KGLRAKT LELVHSDLCGPMNVKARGGY+YFISFID+YSRYGHVYLIQNK D
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKFKEYKAEVENKSGKTIKT 143
           SFEKFKEYKAEVEN+SGKTIKT
Sbjct: 230 SFEKFKEYKAEVENESGKTIKT 251

[Close]

BLAST of Cmc11g0295841 vs. NCBI nr
Match: TYK08480.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGK 60
           +FR  +TQNKRQKVS NAFLWHLRLGHINLN IGRLVKSGLLSQLED+SLPPCDSCLEGK
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 120
           MT+RSF  KGLRAKT LELVHSDLCGPMNVKARGGY+YFISFID+YSRYGHVYLIQNK D
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKFKEYKAEVENKSGKTIKT 143
           SFEKFKEYKAEVEN+SGKTIKT
Sbjct: 230 SFEKFKEYKAEVENESGKTIKT 251

[Close]

BLAST of Cmc11g0295841 vs. NCBI nr
Match: KAA0035526.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 8.1e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 4   TTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTK 63
           T ETQNKRQKVSSNAFL HLRLGHINLN+IGRLVKSGLL+QL+D+SLPPCDSCLEGKMTK
Sbjct: 107 TAETQNKRQKVSSNAFLRHLRLGHINLNKIGRLVKSGLLNQLKDNSLPPCDSCLEGKMTK 166

Query: 64  RSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFE 123
           RSF GKGLRAK  LELVHSDL GPMNVKARGGYEYFISFID+YSRYGHVYLIQNKSDSFE
Sbjct: 167 RSFTGKGLRAKIPLELVHSDLYGPMNVKARGGYEYFISFIDEYSRYGHVYLIQNKSDSFE 226

Query: 124 KFKEYKAEVENKSGK 139
           KFKEYKA+VEN+SG+
Sbjct: 227 KFKEYKAKVENESGR 241

[Close]

BLAST of Cmc11g0295841 vs. NCBI nr
Match: TYK31009.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 8.1e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 4   TTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTK 63
           T ETQNKRQKVSSNAFL HLRLGHINLN+IGRLVKSGLL+QL+D+SLPPCDSCLEGKMTK
Sbjct: 200 TAETQNKRQKVSSNAFLRHLRLGHINLNKIGRLVKSGLLNQLKDNSLPPCDSCLEGKMTK 259

Query: 64  RSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFE 123
           RSF GKGLRAK  LELVHSDL GPMNVKARGGYEYFISFID+YSRYGHVYLIQNKSDSFE
Sbjct: 260 RSFTGKGLRAKIPLELVHSDLYGPMNVKARGGYEYFISFIDEYSRYGHVYLIQNKSDSFE 319

Query: 124 KFKEYKAEVENKSGK 139
           KFKEYKA+VEN+SG+
Sbjct: 320 KFKEYKAKVENESGR 334

[Close]

BLAST of Cmc11g0295841 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-22
Identity = 50/124 (40.32%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 20  LWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTKRSFIGKGLRAKTSLEL 79
           LWH R+GH++   +  L K  L+S  + +++ PCD CL GK  + SF     R    L+L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 80  VHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENKSGKT 139
           V+SD+CGPM +++ GG +YF++FIDD SR   VY+++ K   F+ F+++ A VE ++G+ 
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRK 543

Query: 140 IKTL 144
           +K L
Sbjct: 544 LKRL 547

[Close]

BLAST of Cmc11g0295841 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-13
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 13  KVSSNAFLWHLRLGHIN------LNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTKRSF 72
           K  +N  LWH R GHI+      + R        LL+ LE  S   C+ CL GK  +  F
Sbjct: 410 KHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE-LSCEICEPCLNGKQARLPF 469

Query: 73  IGKGLRAKTSLE----LVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSF 132
             K L+ KT ++    +VHSD+CGP+         YF+ F+D ++ Y   YLI+ KSD F
Sbjct: 470 --KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVF 529

Query: 133 EKFKEYKAEVE 134
             F+++ A+ E
Sbjct: 530 SMFQDFVAKSE 537

[Close]

BLAST of Cmc11g0295841 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 21  WHLRLGHINLNRIGRLVKSGLLSQLEDS-SLPPCDSCLEGKMTKRSFIGKGLRAKTSLEL 80
           WH RLGH +L  +  ++ +  L  L  S  L  C  C   K  K  F    + +   LE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 81  VHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENKSGKT 140
           ++SD+     + +   Y Y++ F+D ++RY  +Y ++ KS   + F  +K+ VEN+    
Sbjct: 506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 141 IKTL 144
           I TL
Sbjct: 566 IGTL 568

[Close]

BLAST of Cmc11g0295841 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 0


Query: 4   TTETQNKRQKVSSNAF-LWHLRLGHINLNRIGRLVKSGLLSQLEDSSLP-------PCDS 63
           T    NK + V+   + L H  LGH N   I + +K   ++ L++S +         C  
Sbjct: 576 TINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPD 635

Query: 64  CLEGKMTKRSFIGKGLRAK-----TSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYG 121
           CL GK TK   I KG R K        + +H+D+ GP++   +    YFISF D+ +R+ 
Sbjct: 636 CLIGKSTKHRHI-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 695

[Close]

BLAST of Cmc11g0295841 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-08
Identity = 38/130 (29.23%), Postives = 63/130 (48.46%), Query Frame = 0


Query: 4   TTETQNKRQKVSSNAF-LWHLRLGHINLNRIGRLVKSGLLSQLEDSSLP-------PCDS 63
           T    NK + V+   + L H  LGH N   I + +K   ++ L++S +         C  
Sbjct: 576 TINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPD 635

Query: 64  CLEGKMTKRSFIGKGLRAK-----TSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYG 121
           CL GK TK   + KG R K        + +H+D+ GP++   +    YFISF D+ +R+ 
Sbjct: 636 CLIGKSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 695

[Close]

BLAST of Cmc11g0295841 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66
Identity = 125/143 (87.41%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGK 60
           MFRT ETQNK+QKVSSNA+LWHLRLGHINLNRI RLVKSG+L+QLED+SLPPC+SCLEGK
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 120
           MTKRSF GKGLRAK  LELVHSDLCGPMNVKARGGYEYFISFIDD+SRYGHVYL+ +KS+
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSE 544

Query: 121 SFEKFKEYKAEVENKSGKTIKTL 144
           SFEKFKEYKAEVEN+ GKTIKTL
Sbjct: 545 SFEKFKEYKAEVENEIGKTIKTL 567

[Close]

BLAST of Cmc11g0295841 vs. ExPASy TrEMBL
Match: A0A5D3CAW3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00060 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.6e-66
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGK 60
           +FR  +TQNKRQKVS NAFLWHLRLGHINLN IGRLVKSGLLSQLED+SLPPCDSCLEGK
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 120
           MT+RSF  KGLRAKT LELVHSDLCGPMNVKARGGY+YFISFID+YSRYGHVYLIQNK D
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKFKEYKAEVENKSGKTIKT 143
           SFEKFKEYKAEVEN+SGKTIKT
Sbjct: 230 SFEKFKEYKAEVENESGKTIKT 251

[Close]

BLAST of Cmc11g0295841 vs. ExPASy TrEMBL
Match: A0A5A7U4V3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001450 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.6e-66
Identity = 127/142 (89.44%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MFRTTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGK 60
           +FR  +TQNKRQKVS NAFLWHLRLGHINLN IGRLVKSGLLSQLED+SLPPCDSCLEGK
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 120
           MT+RSF  KGLRAKT LELVHSDLCGPMNVKARGGY+YFISFID+YSRYGHVYLIQNK D
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKFKEYKAEVENKSGKTIKT 143
           SFEKFKEYKAEVEN+SGKTIKT
Sbjct: 230 SFEKFKEYKAEVENESGKTIKT 251

[Close]

BLAST of Cmc11g0295841 vs. ExPASy TrEMBL
Match: A0A5A7T011 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001920 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 4   TTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTK 63
           T ETQNKRQKVSSNAFL HLRLGHINLN+IGRLVKSGLL+QL+D+SLPPCDSCLEGKMTK
Sbjct: 107 TAETQNKRQKVSSNAFLRHLRLGHINLNKIGRLVKSGLLNQLKDNSLPPCDSCLEGKMTK 166

Query: 64  RSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFE 123
           RSF GKGLRAK  LELVHSDL GPMNVKARGGYEYFISFID+YSRYGHVYLIQNKSDSFE
Sbjct: 167 RSFTGKGLRAKIPLELVHSDLYGPMNVKARGGYEYFISFIDEYSRYGHVYLIQNKSDSFE 226

Query: 124 KFKEYKAEVENKSGK 139
           KFKEYKA+VEN+SG+
Sbjct: 227 KFKEYKAKVENESGR 241

[Close]

BLAST of Cmc11g0295841 vs. ExPASy TrEMBL
Match: A0A5D3E562 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002410 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 4   TTETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTK 63
           T ETQNKRQKVSSNAFL HLRLGHINLN+IGRLVKSGLL+QL+D+SLPPCDSCLEGKMTK
Sbjct: 200 TAETQNKRQKVSSNAFLRHLRLGHINLNKIGRLVKSGLLNQLKDNSLPPCDSCLEGKMTK 259

Query: 64  RSFIGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFE 123
           RSF GKGLRAK  LELVHSDL GPMNVKARGGYEYFISFID+YSRYGHVYLIQNKSDSFE
Sbjct: 260 RSFTGKGLRAKIPLELVHSDLYGPMNVKARGGYEYFISFIDEYSRYGHVYLIQNKSDSFE 319

Query: 124 KFKEYKAEVENKSGK 139
           KFKEYKA+VEN+SG+
Sbjct: 320 KFKEYKAKVENESGR 334

[Close]

BLAST of Cmc11g0295841 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.2e-08
Identity = 30/86 (34.88%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 5   TETQNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDSSLPPCDSCLEGKMTKR 64
           T   N  +       LWH RL H++   +  LVK G L   + SSL  C+ C+ GK  + 
Sbjct: 56  TGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRV 115

Query: 65  SFIGKGLRAKTSLELVHSDLCGPMNV 91
           +F       K  L+ VHSDL G  +V
Sbjct: 116 NFSTGQHTTKNPLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc11g0295841 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	5.4e-66	87.41	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0050872.1	1.6e-65	89.44	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK08480.1	1.6e-65	89.44	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035526.1	8.1e-62	89.63	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK31009.1	8.1e-62	89.63	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0295841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-22	40.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.2e-13	35.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.1e-08	29.84	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q07791	5.3e-08	30.00	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q12491	7.0e-08	29.23	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0295841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	2.6e-66	87.41	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3CAW3	7.6e-66	89.44	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G0006...	[more]
A0A5A7U4V3	7.6e-66	89.44	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G0014...	[more]
A0A5A7T011	3.9e-62	89.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0019...	[more]
A0A5D3E562	3.9e-62	89.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0024...	[more]

BLAST of Cmc11g0295841 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	7.2e-08	34.88	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 12..61 e-value: 2.9E-13 score: 49.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 70..140 e-value: 2.8E-9 score: 38.5
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 71..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0295841.1	Cmc11g0295841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding