Cmc11g0295471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0295471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 12935751 .. 12936110 (+)
RNA-Seq Expression	Cmc11g0295471
Synteny	Cmc11g0295471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTTGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGATAGAGGCCAAGCATGATGAGCATTTATGTATGGTTTTAGAAACCCTTCGAGCTAATAAACTGCATGTAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAATTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTGGGTTTAGCAAGTTATTACTGA

mRNA sequence

ATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTTGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGATAGAGGCCAAGCATGATGAGCATTTATGTATGGTTTTAGAAACCCTTCGAGCTAATAAACTGCATGTAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAATTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTGGGTTTAGCAAGTTATTACTGA

Coding sequence (CDS)

ATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTTGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGATAGAGGCCAAGCATGATGAGCATTTATGTATGGTTTTAGAAACCCTTCGAGCTAATAAACTGCATGTAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAATTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTGGGTTTAGCAAGTTATTACTGA

Protein sequence

MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY

Homology

[Close]

BLAST of Cmc11g0295471 vs. NCBI nr
Match: KAA0039055.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 8.8e-54
Identity = 108/119 (90.76%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK+EA+H+EHL MVL+TLR NK
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNK 247

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+WPRPST+SEVRSFLGLASYY
Sbjct: 248 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYY 306

[Close]

BLAST of Cmc11g0295471 vs. NCBI nr
Match: KAA0059783.1 (pol protein [Cucumis melo var. makuwa] >TYJ99795.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKIEA+H+EHL MVL+TLR NK
Sbjct: 73  MSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKIEAEHEEHLRMVLQTLRDNK 132

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+WPRPSTVSEVRSFLGLA YY
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYY 191

[Close]

BLAST of Cmc11g0295471 vs. NCBI nr
Match: KAA0051425.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EA+H+EHL MVL+TLR NK
Sbjct: 115 MSFGLTNAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLHMVLQTLRDNK 174

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+WPRPST+S+VRSFLGLA YY
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISKVRSFLGLAGYY 233

[Close]

BLAST of Cmc11g0295471 vs. NCBI nr
Match: TYK29834.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFREFLDTFVIVF DDILIYSKIEA+H++HL MVL+TLRANK
Sbjct: 241 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFYDDILIYSKIEAEHEKHLRMVLQTLRANK 300

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVT+WPRPSTVSEVRSFLGL  YY
Sbjct: 301 LYAKFSKCEFWLKQISFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLIGYY 359

[Close]

BLAST of Cmc11g0295471 vs. NCBI nr
Match: KAA0035574.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK EAKH+EHL M+L+TLR NK
Sbjct: 590 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAKHEEHLRMILQTLRDNK 649

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W RPSTVSEVRSFLGLA YY
Sbjct: 650 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYY 708

[Close]

BLAST of Cmc11g0295471 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-20
Identity = 47/119 (39.50%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           M FGL NAP  F   MN + R  L+   +V++DDI+++S    +H + L +V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L ++  KCEF  ++ +FLGHV++  G+  +P KIEA+  +P P+   E+++FLGL  YY
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452

[Close]

BLAST of Cmc11g0295471 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-20
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           M FGL NAP  F   MN + R  L+   +V++DDI+I+S    +H   + +V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L ++  KCEF  K+ +FLGH+V+  G+  +P K++A+ ++P P+   E+R+FLGL  YY
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYY 451

[Close]

BLAST of Cmc11g0295471 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           + FGL NA ++F   ++ V RE +     V++DD++I+S+ E+ H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           + V   K  F+ + V +LG +VSK G   DP K++A+  +P P  V +VRSFLGLASYY
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYY 427

[Close]

BLAST of Cmc11g0295471 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-19
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           + FGL NAP +F  +++ + RE +     V+IDDI+++S+    H ++L +VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L V   K  F   QV FLG++V+  G+  DP K+ A++  P P++V E++ FLG+ SYY
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYY 368

[Close]

BLAST of Cmc11g0295471 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           M FGL NAP+ F   M   FR+    FV V++DDILI+S+   +H +HL  VLE L+   
Sbjct: 718 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 777

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L VK  KC+F  ++  FLG+ +    ++    K  A+ ++P P TV + + FLG+ +YY
Sbjct: 778 LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYY 834

[Close]

BLAST of Cmc11g0295471 vs. ExPASy TrEMBL
Match: A0A5A7TCC7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001510 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.3e-54
Identity = 108/119 (90.76%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK+EA+H+EHL MVL+TLR NK
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNK 247

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+WPRPST+SEVRSFLGLASYY
Sbjct: 248 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISEVRSFLGLASYY 306

[Close]

BLAST of Cmc11g0295471 vs. ExPASy TrEMBL
Match: A0A5A7UV33 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00410 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKIEA+H+EHL MVL+TLR NK
Sbjct: 73  MSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKIEAEHEEHLRMVLQTLRDNK 132

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+WPRPSTVSEVRSFLGLA YY
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYY 191

[Close]

BLAST of Cmc11g0295471 vs. ExPASy TrEMBL
Match: A0A5A7UCP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001720 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.1e-53
Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EA+H+EHL MVL+TLR NK
Sbjct: 115 MSFGLTNAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLHMVLQTLRDNK 174

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+WPRPST+S+VRSFLGLA YY
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTISKVRSFLGLAGYY 233

[Close]

BLAST of Cmc11g0295471 vs. ExPASy TrEMBL
Match: A0A5D3E1T8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00660 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.0e-53
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFREFLDTFVIVF DDILIYSKIEA+H++HL MVL+TLRANK
Sbjct: 241 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFYDDILIYSKIEAEHEKHLRMVLQTLRANK 300

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVT+WPRPSTVSEVRSFLGL  YY
Sbjct: 301 LYAKFSKCEFWLKQISFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLIGYY 359

[Close]

BLAST of Cmc11g0295471 vs. ExPASy TrEMBL
Match: A0A5D3E4V0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001880 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK EAKH+EHL M+L+TLR NK
Sbjct: 590 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAKHEEHLRMILQTLRDNK 649

Query: 61  LHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY 120
           L+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W RPSTVSEVRSFLGLA YY
Sbjct: 650 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYY 708

[Close]

BLAST of Cmc11g0295471 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 48  HLCMVLETLRANKLHVKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTNWPRPST 107
           HL MVL+    ++ +    KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVRSFLGLASYY 120
            +E+R FLGL  YY
Sbjct: 63  TTELRGFLGLTGYY 76

The following BLAST results are available for this feature:

BLAST of Cmc11g0295471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039055.1	8.8e-54	90.76	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0059783.1	3.3e-53	90.76	pol protein [Cucumis melo var. makuwa] >TYJ99795.1 pol protein [Cucumis melo var...	[more]
KAA0051425.1	1.3e-52	89.08	pol protein [Cucumis melo var. makuwa]	[more]
TYK29834.1	1.7e-52	89.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035574.1	2.2e-52	89.92	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0295471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.3e-20	39.50	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	3.0e-20	38.66	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	1.1e-19	40.34	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	5.6e-19	37.82	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	3.4e-16	39.50	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0295471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCC7	4.3e-54	90.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7UV33	1.6e-53	90.76	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00410 PE...	[more]
A0A5A7UCP3	6.1e-53	89.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001720 PE...	[more]
A0A5D3E1T8	8.0e-53	89.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E4V0	1.0e-52	89.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc11g0295471 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.6e-13	44.59	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 1.5E-32 score: 114.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..119 e-value: 2.8E-8 score: 35.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 6.3E-17 score: 61.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 17..119
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 17..119
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 3.12562E-33 score: 112.304
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0295471.1	Cmc11g0295471.1	mRNA