Cmc11g0295121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0295121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon opus
Location	CMiso1.1chr11: 12246073 .. 12246708 (-)
RNA-Seq Expression	Cmc11g0295121
Synteny	Cmc11g0295121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTGAACTATGTAATGCTCCTACAACATTTCAAAGATGCATGTTAAGCATATTCACTAATTTCATAGGAAAATGCATAGAAGTGTTCATGGTTGATTTTACAGTTTATGGGAATGATTTTTATTCTTGCTTGAATAATTTAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAATGCTTAACTTTGAAAAGTGTCATTTCATGGCCTCTTACGGTATAGTACTAGGACACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATTAATGTAATTCAAAACTTATCCTACCCCACTTGTTTAAAAGATGTTAGATCATTTTTTGTTAGTGCCGGATTTTATAGAAGGTTCATAAAAGACTTTTCTAAGATAGTTTTGCCTCTGACAAATTTACTTAAAAAAGATGTCCCTTTTGTAATTGATGATAAATGCATGCATGTTTTTGATACTTTGAAAGATAAATTGACTTCTTCTCCTATCTTGCAAACACTTAATTGGAACTCACCATTTGAAATAATATGTGATGCAAATGATTATGTATTAGGTGTAGTACTAGGACAAAGAGTAGATAACAAATTGCATGCTATATATTTCACATCTCGAACTCTGAATTCTGCTTAA

mRNA sequence

ATGCCCTTTGAACTATGTAATGCTCCTACAACATTTCAAAGATGCATGTTAAGCATATTCACTAATTTCATAGGAAAATGCATAGAAGTGTTCATGGTTGATTTTACAGTTTATGGGAATGATTTTTATTCTTGCTTGAATAATTTAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAATGCTTAACTTTGAAAAGTGTCATTTCATGGCCTCTTACGGTATAGTACTAGGACACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATTAATGTAATTCAAAACTTATCCTACCCCACTTGTTTAAAAGATGTTAGATCATTTTTTGTTAGTGCCGGATTTTATAGAAGGTTCATAAAAGACTTTTCTAAGATAGTTTTGCCTCTGACAAATTTACTTAAAAAAGATGTCCCTTTTGTAATTGATGATAAATGCATGCATGTTTTTGATACTTTGAAAGATAAATTGACTTCTTCTCCTATCTTGCAAACACTTAATTGGAACTCACCATTTGAAATAATATGTGATGCAAATGATTATGTATTAGGTGTAGTACTAGGACAAAGAGTAGATAACAAATTGCATGCTATATATTTCACATCTCGAACTCTGAATTCTGCTTAA

Coding sequence (CDS)

ATGCCCTTTGAACTATGTAATGCTCCTACAACATTTCAAAGATGCATGTTAAGCATATTCACTAATTTCATAGGAAAATGCATAGAAGTGTTCATGGTTGATTTTACAGTTTATGGGAATGATTTTTATTCTTGCTTGAATAATTTAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAATGCTTAACTTTGAAAAGTGTCATTTCATGGCCTCTTACGGTATAGTACTAGGACACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATTAATGTAATTCAAAACTTATCCTACCCCACTTGTTTAAAAGATGTTAGATCATTTTTTGTTAGTGCCGGATTTTATAGAAGGTTCATAAAAGACTTTTCTAAGATAGTTTTGCCTCTGACAAATTTACTTAAAAAAGATGTCCCTTTTGTAATTGATGATAAATGCATGCATGTTTTTGATACTTTGAAAGATAAATTGACTTCTTCTCCTATCTTGCAAACACTTAATTGGAACTCACCATTTGAAATAATATGTGATGCAAATGATTATGTATTAGGTGTAGTACTAGGACAAAGAGTAGATAACAAATTGCATGCTATATATTTCACATCTCGAACTCTGAATTCTGCTTAA

Protein sequence

MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTNLMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYRRFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICDANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA

Homology

[Close]

BLAST of Cmc11g0295121 vs. NCBI nr
Match: KYP78666.1 (Retrovirus-related Pol polyprotein from transposon opus [Cajanus cajan])

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-77
Identity = 136/211 (64.45%), Postives = 172/211 (81.52%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFT+YG+ F +CL+NL+ +L RCI+T+
Sbjct: 1   MPFGLCNAPDTFQRCMLSIFSDFLENCIEVFMDDFTIYGSSFDTCLDNLDRVLNRCIETD 60

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SS+GIEVD AKI+VI  L YP+C+++VRSF V AGFYR
Sbjct: 61  LVLNFEKCHFMVEQGIVLGHIISSRGIEVDPAKISVISQLPYPSCVREVRSFLVHAGFYR 120

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIK+FSK  LPL+NLL+K+V FV DD+C  VFD LK+ LT++PI+Q L+W  PFE++CD
Sbjct: 121 RFIKEFSKKALPLSNLLQKEVDFVFDDRCKQVFDCLKEALTTTPIIQALDWTVPFELMCD 180

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            ++Y LG VL QRVD     IY+ SRTLN+A
Sbjct: 181 VSNYALGAVLAQRVDKLPRVIYYASRTLNAA 211

[Close]

BLAST of Cmc11g0295121 vs. NCBI nr
Match: XP_021603241.1 (uncharacterized protein LOC110608326 [Manihot esculenta])

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-76
Identity = 135/211 (63.98%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCM+SIF+ F+ K IEVFM DFTVYGN F  CL NL  ILKRC+++N
Sbjct: 361 MPFGLCNAPATFQRCMVSIFSEFVEKIIEVFMDDFTVYGNSFDECLINLTHILKRCLESN 420

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LN+EKCHFM   G++LGH VS++GIEVDKAK++VI++L YPTC++D+RSF   AGFYR
Sbjct: 421 LVLNYEKCHFMVDQGLILGHTVSNRGIEVDKAKVDVIKDLPYPTCIRDIRSFLGHAGFYR 480

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIKDFS+I  PL  LL+KDVPF  D++C   F+TLK+KL ++PI+Q  NW+ PFEI+CD
Sbjct: 481 RFIKDFSRIAQPLCKLLQKDVPFNFDNECREAFNTLKEKLVAAPIIQAPNWHYPFEIMCD 540

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VLGQR+D K H I + SRTL+ A
Sbjct: 541 ASNYALGAVLGQRIDKKPHVICYASRTLDKA 571

[Close]

BLAST of Cmc11g0295121 vs. NCBI nr
Match: XP_024932191.1 (uncharacterized protein LOC112492555, partial [Ziziphus jujuba])

HSP 1 Score: 295.0 bits (754), Expect = 5.0e-76
Identity = 139/211 (65.88%), Postives = 164/211 (77.73%), Query Frame = 0


Query: 1    MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
            MPF LCNAP TFQRCM+SIF++ +   IE+FM DF+V+G+ F SCL NL  +L RC +TN
Sbjct: 995  MPFGLCNAPATFQRCMMSIFSDMVEDIIEIFMDDFSVFGDSFTSCLQNLSRVLLRCKETN 1054

Query: 61   LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
            L+LN+EKCHFM   GIVLGH VS +GIEVDKAKI VI+ L  PT +K +RSF   AGFYR
Sbjct: 1055 LVLNWEKCHFMVQEGIVLGHKVSKRGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHAGFYR 1114

Query: 121  RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
            RFIKDFSKI  PL NLL KDVPFV DD+CMH F+ LK+KL  +PI+ T NWN PFEI+CD
Sbjct: 1115 RFIKDFSKITKPLCNLLNKDVPFVFDDECMHAFNLLKEKLICAPIMCTPNWNLPFEIMCD 1174

Query: 181  ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            A+DY +G VLGQR D KLH IY+ SRTLN A
Sbjct: 1175 ASDYAIGAVLGQRKDKKLHVIYYASRTLNDA 1205

[Close]

BLAST of Cmc11g0295121 vs. NCBI nr
Match: KYP30916.1 (Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 134/211 (63.51%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFTVYG+ F +CL++L+ +L RCI+TN
Sbjct: 18  MPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETN 77

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SSKGIEVD AK++VI  L YP+C+++VRSF   AGFYR
Sbjct: 78  LVLNFEKCHFMVEQGIVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYR 137

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RF+K+FSK  LPL+NLL+KDV FV DD+C   FD LK+ LT++PI+Q  +W  PFE++CD
Sbjct: 138 RFVKEFSKKALPLSNLLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPFELMCD 197

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VL QRVD     IY+ SRTL++A
Sbjct: 198 ASNYALGAVLAQRVDKLPRVIYYASRTLDAA 228

[Close]

BLAST of Cmc11g0295121 vs. NCBI nr
Match: XP_023758997.1 (uncharacterized protein LOC111907462 [Lactuca sativa])

HSP 1 Score: 291.6 bits (745), Expect = 5.5e-75
Identity = 135/211 (63.98%), Postives = 166/211 (78.67%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCM+SIF+ ++   IEVFM DFTVYGN F  CL NL  ILKRCI+TN
Sbjct: 614 MPFGLCNAPATFQRCMVSIFSEYVENIIEVFMDDFTVYGNSFQECLTNLTKILKRCIETN 673

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM S G++LGH+VS KGIEVDKAKI+VIQ+L YPTC+++VRSF   AGFYR
Sbjct: 674 LVLNFEKCHFMVSQGLILGHIVSKKGIEVDKAKIDVIQSLPYPTCVREVRSFLGHAGFYR 733

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIKDFSKI  P+  LL+K+V F  ++ C   FD LK+ LTS+PI+Q  NW+ PFEI+CD
Sbjct: 734 RFIKDFSKITRPMCQLLQKEVDFEFNEACKEAFDKLKELLTSAPIMQAPNWDLPFEIMCD 793

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y +G VLGQ+     H IY+ SRTL++A
Sbjct: 794 ASNYAIGAVLGQKNGRASHVIYYASRTLDNA 824

[Close]

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 75/220 (34.09%), Postives = 117/220 (53.18%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           +PF L NAP  FQR +  I    IGK   V++ D  V+  D+ +   NL L+L      N
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L +N EK HF+ +    LG++V++ GI+ D  K+  I  +  PT +K+++ F     +YR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIKDFSKIVLPLTNLLK-----------KDVPFVIDDKCMHVFDTLKDKLTSSPILQTL 180
           +FI+D++K+  PLTNL +             VP  +D+  +  F+ LK  L SS IL   
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 NWNSPFEIICDANDYVLGVVLGQRVDNKLHAIYFTSRTLN 210
            +  PF +  DA+++ +G VL Q    +   I + SR+LN
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLN 469

[Close]

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 74/210 (35.24%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF L NAP TFQRCM +I    + K   V++ D  ++       LN+++L+  +  D N
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L L  +KC F+      LGH+V+  GI+ +  K+  I +   PT  K++R+F    G+YR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDD-KCMHVFDTLKDKLTSSPILQTLNWNSPFEIIC 180
           +FI +++ I  P+T+ LKK         + +  F+ LK  +   PILQ  ++   F +  
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DANDYVLGVVLGQRVDNKLHAIYFTSRTLN 210
           DA++  LG VL Q      H I F SRTLN
Sbjct: 513 DASNLALGAVLSQNG----HPISFISRTLN 538

[Close]

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 73/210 (34.76%), Postives = 110/210 (52.38%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF L NAP TFQRCM  I    + K   V++ D  V+       L +L L+ ++    N
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L L  +KC F+      LGH+++  GI+ +  KI  IQ    PT  K++++F    G+YR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIKDFSKIVLPLTNLLKKDVPF-VIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIIC 180
           +FI +F+ I  P+T  LKK++     + +    F  LK  ++  PIL+  ++   F +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DANDYVLGVVLGQRVDNKLHAIYFTSRTLN 210
           DA+D  LG VL Q      H + + SRTLN
Sbjct: 514 DASDVALGAVLSQ----DGHPLSYISRTLN 539

[Close]

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 72/206 (34.95%), Postives = 99/206 (48.06%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           +PF L  AP +FQR M   F+        ++M D  V G      L NL  +  +C + N
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L L+ EKC F       LGH  + KGI  D  K +VIQN   P      R F     +YR
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIK+F+     +T L KK+VPF   D+C   F  LK +L +  +LQ  +++  F I  D
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSR 207
           A+    G VL Q  +     + + SR
Sbjct: 622 ASKQACGAVLTQNHNGHQLPVAYASR 647

[Close]

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 65/204 (31.86%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           +PF L NA + FQR +  +    IGK   V++ D  ++  +    + +++ +LK  ID N
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           + ++ EK  F       LG +VS  G + D  K+  IQ    P C+  VRSF   A +YR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIKDFSKIVLPLTNLLK-----------KDVPFVIDDKCMHVFDTLKDKLTSSP-ILQT 180
            FIKDF+ I  P+T++LK           K +P   ++   + F  L++ L S   IL+ 
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 LNWNSPFEIICDANDYVLGVVLGQ 193
            ++  PF++  DA+   +G VL Q
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQ 512

[Close]

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A151UH77 (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan OX=3821 GN=KK1_048718 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.7e-77
Identity = 136/211 (64.45%), Postives = 172/211 (81.52%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFT+YG+ F +CL+NL+ +L RCI+T+
Sbjct: 1   MPFGLCNAPDTFQRCMLSIFSDFLENCIEVFMDDFTIYGSSFDTCLDNLDRVLNRCIETD 60

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SS+GIEVD AKI+VI  L YP+C+++VRSF V AGFYR
Sbjct: 61  LVLNFEKCHFMVEQGIVLGHIISSRGIEVDPAKISVISQLPYPSCVREVRSFLVHAGFYR 120

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIK+FSK  LPL+NLL+K+V FV DD+C  VFD LK+ LT++PI+Q L+W  PFE++CD
Sbjct: 121 RFIKEFSKKALPLSNLLQKEVDFVFDDRCKQVFDCLKEALTTTPIIQALDWTVPFELMCD 180

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            ++Y LG VL QRVD     IY+ SRTLN+A
Sbjct: 181 VSNYALGAVLAQRVDKLPRVIYYASRTLNAA 211

[Close]

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A6P6GDJ4 (Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.4e-76
Identity = 139/211 (65.88%), Postives = 164/211 (77.73%), Query Frame = 0


Query: 1    MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
            MPF LCNAP TFQRCM+SIF++ +   IE+FM DF+V+G+ F SCL NL  +L RC +TN
Sbjct: 995  MPFGLCNAPATFQRCMMSIFSDMVEDIIEIFMDDFSVFGDSFTSCLQNLSRVLLRCKETN 1054

Query: 61   LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
            L+LN+EKCHFM   GIVLGH VS +GIEVDKAKI VI+ L  PT +K +RSF   AGFYR
Sbjct: 1055 LVLNWEKCHFMVQEGIVLGHKVSKRGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHAGFYR 1114

Query: 121  RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
            RFIKDFSKI  PL NLL KDVPFV DD+CMH F+ LK+KL  +PI+ T NWN PFEI+CD
Sbjct: 1115 RFIKDFSKITKPLCNLLNKDVPFVFDDECMHAFNLLKEKLICAPIMCTPNWNLPFEIMCD 1174

Query: 181  ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            A+DY +G VLGQR D KLH IY+ SRTLN A
Sbjct: 1175 ASDYAIGAVLGQRKDKKLHVIYYASRTLNDA 1205

[Close]

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A151QKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049680 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 7.0e-76
Identity = 134/211 (63.51%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFTVYG+ F +CL++L+ +L RCI+TN
Sbjct: 18  MPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETN 77

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SSKGIEVD AK++VI  L YP+C+++VRSF   AGFYR
Sbjct: 78  LVLNFEKCHFMVEQGIVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYR 137

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RF+K+FSK  LPL+NLL+KDV FV DD+C   FD LK+ LT++PI+Q  +W  PFE++CD
Sbjct: 138 RFVKEFSKKALPLSNLLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPFELMCD 197

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VL QRVD     IY+ SRTL++A
Sbjct: 198 ASNYALGAVLAQRVDKLPRVIYYASRTLDAA 228

[Close]

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A151QZW2 (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043040 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.5e-75
Identity = 133/211 (63.03%), Postives = 169/211 (80.09%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIE+FM DFTVYG+ F +CL++L+  L RCI+TN
Sbjct: 480 MPFGLCNAPGTFQRCMLSIFSDFLENCIELFMDDFTVYGSSFDACLDSLDRFLNRCIETN 539

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SSKGIEVD AK++VI  L YP+C+++VRSF   AGFYR
Sbjct: 540 LVLNFEKCHFMVEQGIVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYR 599

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RF+K+FSK  LPL+NLL+KDV FV DD+C   FD LK+ LT++PI+Q  +W  PFE++CD
Sbjct: 600 RFVKEFSKKALPLSNLLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPFELMCD 659

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VL QRVD     IY+ SRTL++A
Sbjct: 660 ASNYALGAVLAQRVDKLPRVIYYASRTLDAA 690

[Close]

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A6P6GGJ1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112492876 OS=Ziziphus jujuba OX=326968 GN=LOC112492876 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 137/211 (64.93%), Postives = 161/211 (76.30%), Query Frame = 0


Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCM+SIF+N +   IE+FM DF+V+G+ F SCL NL  +L RC +TN
Sbjct: 624 MPFGLCNAPATFQRCMMSIFSNMVEDIIEIFMDDFSVFGDSFTSCLQNLSRLLLRCKETN 683

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LN+EKCHFM   GIVLGH VS  GIEVDKAKI VI+ L  PT +K +RSF    GFYR
Sbjct: 684 LVLNWEKCHFMVQEGIVLGHKVSKSGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHVGFYR 743

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIKDFSKI   L NLL KDVPFV DD+CMH F+ LK+KL  +PI+ T NWN PFEI+CD
Sbjct: 744 RFIKDFSKITKLLCNLLNKDVPFVFDDECMHAFNRLKEKLICAPIMCTPNWNLPFEIMCD 803

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A+D+ +G VLGQR D KLH IY+ SRTLN A
Sbjct: 804 ASDFAIGAVLGQRKDKKLHVIYYASRTLNDA 834

[Close]

BLAST of Cmc11g0295121 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-12
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 46  LNNLELILKRCIDTNLMLNFEKCHFMASYGIVLG--HLVSSKGIEVDKAKINVIQNLSYP 105
           +N+L ++L+         N +KC F       LG  H++S +G+  D AK+  +     P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 106 TCLKDVRSFFVSAGFYRRFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSS 165
               ++R F    G+YRRF+K++ KIV PLT LLKK+      +     F  LK  +T+ 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTL 120

Query: 166 PILQTLNWNSPF 176
           P+L   +   PF
Sbjct: 121 PVLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc11g0295121 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP78666.1	3.5e-77	64.45	Retrovirus-related Pol polyprotein from transposon opus [Cajanus cajan]	[more]
XP_021603241.1	2.2e-76	63.98	uncharacterized protein LOC110608326 [Manihot esculenta]	[more]
XP_024932191.1	5.0e-76	65.88	uncharacterized protein LOC112492555, partial [Ziziphus jujuba]	[more]
KYP30916.1	1.4e-75	63.51	Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan]	[more]
XP_023758997.1	5.5e-75	63.98	uncharacterized protein LOC111907462 [Lactuca sativa]	[more]

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	1.0e-31	34.09	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	3.3e-30	35.24	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.1e-28	34.76	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10394	1.2e-24	34.95	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P10401	2.5e-22	31.86	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151UH77	1.7e-77	64.45	Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan OX=3821...	[more]
A0A6P6GDJ4	2.4e-76	65.88	Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1	[more]
A0A151QKV4	7.0e-76	63.51	Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus ca...	[more]
A0A151QZW2	3.5e-75	63.03	Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_...	[more]
A0A6P6GGJ1	1.7e-74	64.93	LOW QUALITY PROTEIN: uncharacterized protein LOC112492876 OS=Ziziphus jujuba OX=...	[more]

BLAST of Cmc11g0295121 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.2e-12	31.82	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 91..183 e-value: 1.6E-23 score: 84.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..89 e-value: 2.0E-24 score: 88.3
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 146..211 e-value: 9.2E-15 score: 54.5
None	No IPR available	PANTHER	PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	coord: 1..206
None	No IPR available	PANTHER	PTHR34072:SF9	ENZYMATIC POLYPROTEIN-RELATED	coord: 1..206
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 2.73201E-26 score: 97.6661
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0295121.1	Cmc11g0295121.1	mRNA