Cmc11g0295061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0295061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 12112961 .. 12113746 (-)
RNA-Seq Expression	Cmc11g0295061
Synteny	Cmc11g0295061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTATGCATTGACTGTAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCATTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAAGATTAAGGATGGTGATGTACTGAAGACGGCCTTTCGTTCTAGATACGGACACTATGAGTTTATTGTGATGTCTTTCAGGTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGAAGTTCCTAGACACTTTTTTGATCGTGTTTATTGATGACATCTTGATATATTCCAAGACGGAGGCTGAATATGAGAAACATTTATGTATGGTTCTGCAAACCCTTCAGGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTTTAGGTTAAAGCAGATGTTCTTTCTAGGCCATGTGGTTTCTAAGGTTGGAGTTTCTGTGGACCCAACTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCCGGTTATTATCGGCGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGGAGCTCCTTTTCTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTACACCGGTTCTTACTGTACCTGATGGTTCTGGCATTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTATATAG

mRNA sequence

ATGCGCCTATGCATTGACTGTAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCATTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAAGATTAAGGATGGTGATGTACTGAAGACGGCCTTTCGTTCTAGATACGGACACTATGAGTTTATTGTGATGTCTTTCAGGTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGAAGTTCCTAGACACTTTTTTGATCGTGTTTATTGATGACATCTTGATATATTCCAAGACGGAGGCTGAATATGAGAAACATTTATGTATGGTTCTGCAAACCCTTCAGGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTTTAGGTTAAAGCAGATGTTCTTTCTAGGCCATGTGGTTTCTAAGGTTGGAGTTTCTGTGGACCCAACTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCCGGTTATTATCGGCGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGGAGCTCCTTTTCTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTACACCGGTTCTTACTGTACCTGATGGTTCTGGCATTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTATATAG

Coding sequence (CDS)

ATGCGCCTATGCATTGACTGTAGGGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCATTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAAGATTAAGGATGGTGATGTACTGAAGACGGCCTTTCGTTCTAGATACGGACACTATGAGTTTATTGTGATGTCTTTCAGGTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGAAGTTCCTAGACACTTTTTTGATCGTGTTTATTGATGACATCTTGATATATTCCAAGACGGAGGCTGAATATGAGAAACATTTATGTATGGTTCTGCAAACCCTTCAGGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTTTAGGTTAAAGCAGATGTTCTTTCTAGGCCATGTGGTTTCTAAGGTTGGAGTTTCTGTGGACCCAACTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCCGGTTATTATCGGCGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAAGGAGCTCCTTTTCTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTACACCGGTTCTTACTGTACCTGATGGTTCTGGCATTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTATATAG

Protein sequence

MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTAFRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKHLCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTVPDGSGIFVIYSDASKKGLGCI

Homology

[Close]

BLAST of Cmc11g0295061 vs. NCBI nr
Match: KAA0053219.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLKIKDGDVLKTA
Sbjct: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATLFSKIDLRSGYHQLKIKDGDVLKTA 60

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH
Sbjct: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDP KIEAVTSWPRPSTVSE
Sbjct: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSGIFVIYSDASKKGLGCI
Sbjct: 241 PDGSGIFVIYSDASKKGLGCI 261

[Close]

BLAST of Cmc11g0295061 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 239/261 (91.57%), Postives = 249/261 (95.40%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGDV KTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           L +VLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIEAVT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT PVLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSG FVIYSDASKKGLGC+
Sbjct: 431 PDGSGSFVIYSDASKKGLGCV 451

[Close]

BLAST of Cmc11g0295061 vs. NCBI nr
Match: KAA0047044.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 239/261 (91.57%), Postives = 248/261 (95.02%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGDV KTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           L MVLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIE VT W RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT PVLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSG FVIYSDASKKGLGC+
Sbjct: 241 PDGSGSFVIYSDASKKGLGCV 261

[Close]

BLAST of Cmc11g0295061 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 239/261 (91.57%), Postives = 249/261 (95.40%), Query Frame = 0


Query: 1    MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
            MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGDV KTA
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
            FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
            L +VLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIEAVT W RPSTVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT PVLTV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1344

Query: 241  PDGSGIFVIYSDASKKGLGCI 262
            PDGSG FVIYSDASKKGLGC+
Sbjct: 1345 PDGSGSFVIYSDASKKGLGCV 1365

[Close]

BLAST of Cmc11g0295061 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.0 bits (1242), Expect = 1.6e-132
Identity = 238/261 (91.19%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IK+GDV KTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           L MVLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIEAVTSW RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT P+LTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTV 240

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSG FVIYSDAS+KGLGC+
Sbjct: 241 PDGSGSFVIYSDASRKGLGCV 261

[Close]

BLAST of Cmc11g0295061 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.0e-54
Identity = 100/261 (38.31%), Postives = 162/261 (62.07%), Query Frame = 0


Query: 2   RLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTAF 61
           R+ ID R+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+++ +  + KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKHL 121
            ++ GHYE++ M F L NAPA F   MN + R  L+   +V++DDI+I+S +  E+   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 CMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSEV 181
            +V   L D  L  +  KCEF  K+  FLGH+V+  G+  +P K++A+ S+P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSK-ACEDSFQNLKQKLVTTPVLTV 241
           R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L +
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQL 501

Query: 242 PDGSGIFVIYSDASKKGLGCI 262
           PD    FV+ +DAS   LG +
Sbjct: 502 PDFEKKFVLTTDASNLALGAV 522

[Close]

BLAST of Cmc11g0295061 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.8e-52
Identity = 101/261 (38.70%), Postives = 162/261 (62.07%), Query Frame = 0


Query: 2   RLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTAF 61
           R+ ID R+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+++    V KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKHL 121
            +++GHYE++ M F L NAPA F   MN + R  L+   +V++DDI+++S +  E+ + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 CMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSEV 181
            +V + L    L  +  KCEF  ++  FLGHV++  G+  +P KIEA+  +P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDS-FQNLKQKLVTTPVLTV 241
           ++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L V
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKV 502

Query: 242 PDGSGIFVIYSDASKKGLGCI 262
           PD +  F + +DAS   LG +
Sbjct: 503 PDFTKKFTLTTDASDVALGAV 523

[Close]

BLAST of Cmc11g0295061 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.3e-48
Identity = 94/261 (36.02%), Postives = 158/261 (60.54%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           +R+ +D + LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH ++++ GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FR   G +E++VM + ++ APA F   +N +  +  ++ ++ ++DDILI+SK+E+E+ KH
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           +  VLQ L++  L    +KCEF   Q+ F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           +R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
            D S   ++ +DAS   +G +
Sbjct: 702 FDFSKKILLETDASDVAVGAV 722

[Close]

BLAST of Cmc11g0295061 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.3e-48
Identity = 94/261 (36.02%), Postives = 158/261 (60.54%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           +R+ +D + LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH ++++ GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FR   G +E++VM + ++ APA F   +N +  +  ++ ++ ++DDILI+SK+E+E+ KH
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           +  VLQ L++  L    +KCEF   Q+ F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           +R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
            D S   ++ +DAS   +G +
Sbjct: 702 FDFSKKILLETDASDVAVGAV 722

[Close]

BLAST of Cmc11g0295061 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.3e-48
Identity = 94/261 (36.02%), Postives = 158/261 (60.54%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           +R+ +D + LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH ++++ GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FR   G +E++VM + ++ APA F   +N +  +  ++ ++ ++DDILI+SK+E+E+ KH
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           +  VLQ L++  L    +KCEF   Q+ F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           +R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
            D S   ++ +DAS   +G +
Sbjct: 702 FDFSKKILLETDASDVAVGAV 722

[Close]

BLAST of Cmc11g0295061 vs. ExPASy TrEMBL
Match: A0A5A7UIB3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00030 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 6.1e-146
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLKIKDGDVLKTA
Sbjct: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATLFSKIDLRSGYHQLKIKDGDVLKTA 60

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH
Sbjct: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDP KIEAVTSWPRPSTVSE
Sbjct: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSGIFVIYSDASKKGLGCI
Sbjct: 241 PDGSGIFVIYSDASKKGLGCI 261

[Close]

BLAST of Cmc11g0295061 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.9e-133
Identity = 239/261 (91.57%), Postives = 249/261 (95.40%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGDV KTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           L +VLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIEAVT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT PVLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSG FVIYSDASKKGLGC+
Sbjct: 431 PDGSGSFVIYSDASKKGLGCV 451

[Close]

BLAST of Cmc11g0295061 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.9e-133
Identity = 239/261 (91.57%), Postives = 249/261 (95.40%), Query Frame = 0


Query: 1    MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
            MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGDV KTA
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
            FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
            L +VLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIEAVT W RPSTVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT PVLTV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1344

Query: 241  PDGSGIFVIYSDASKKGLGCI 262
            PDGSG FVIYSDASKKGLGC+
Sbjct: 1345 PDGSGSFVIYSDASKKGLGCV 1365

[Close]

BLAST of Cmc11g0295061 vs. ExPASy TrEMBL
Match: A0A5A7TVQ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00290 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.9e-133
Identity = 239/261 (91.57%), Postives = 248/261 (95.02%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGDV KTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           L MVLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIE VT W RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT PVLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSG FVIYSDASKKGLGC+
Sbjct: 241 PDGSGSFVIYSDASKKGLGCV 261

[Close]

BLAST of Cmc11g0295061 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.7e-133
Identity = 238/261 (91.19%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MRLCIDCRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDVLKTA 60
           MRLCID RELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IK+GDV KTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFRLTNAPAVFMDLMNRVFRKFLDTFLIVFIDDILIYSKTEAEYEKH 120
           FRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFR+FLDTF+IVFIDDILIYSKTEAE+E+H
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LCMVLQTLQDNKLYAKFSKCEFRLKQMFFLGHVVSKVGVSVDPTKIEAVTSWPRPSTVSE 180
           L MVLQTL+DNKLYAKFSKCEF LKQ+ FLGHVVSK GVSVDP KIEAVTSW RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF+WSKACEDSFQNLKQKLVT P+LTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTV 240

Query: 241 PDGSGIFVIYSDASKKGLGCI 262
           PDGSG FVIYSDAS+KGLGC+
Sbjct: 241 PDGSGSFVIYSDASRKGLGCV 261

[Close]

BLAST of Cmc11g0295061 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 7.4e-27
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 120 HLCMVLQTLQDNKLYAKFSKCEFRLKQMFFLG--HVVSKVGVSVDPTKIEAVTSWPRPST 179
           HL MVLQ  + ++ YA   KC F   Q+ +LG  H++S  GVS DP K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFLWSKACEDSFQNLKQKLVTTPV 239
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W++    +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 240 LTVPD 243
           L +PD
Sbjct: 123 LALPD 126

The following BLAST results are available for this feature:

BLAST of Cmc11g0295061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053219.1	1.3e-145	99.23	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	1.2e-132	91.57	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047044.1	1.2e-132	91.57	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047433.1	1.2e-132	91.57	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042119.1	1.6e-132	91.19	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0295061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	9.0e-54	38.31	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.8e-52	38.70	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P0CT41	4.3e-48	36.02	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.3e-48	36.02	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.3e-48	36.02	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0295061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIB3	6.1e-146	99.23	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00030 PE...	[more]
A0A5A7SPZ2	5.9e-133	91.57	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE...	[more]
A0A5A7TV57	5.9e-133	91.57	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TVQ2	5.9e-133	91.57	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00290 PE...	[more]
A0A5A7TLA3	7.7e-133	91.19	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]

BLAST of Cmc11g0295061 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.4e-27	45.60	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 1.7E-19 score: 70.2
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 4.4E-61 score: 207.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..260
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..260
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 3.78704E-73 score: 219.389
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..254 e-value: 4.9E-32 score: 111.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 4.4E-61 score: 207.9
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 217..261 e-value: 7.9E-10 score: 38.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0295061.1	Cmc11g0295061.1	mRNA