Cmc11g0294841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 11731735 .. 11732973 (+)
RNA-Seq Expression	Cmc11g0294841
Synteny	Cmc11g0294841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTATGTATTAACTATAAGGAGTTGAATAAGGTAACCGTTAAGAACAAATATCCCTTGCCTAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGTTGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTCATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAAAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGGAGGTATCCTTTCTAGGCCACGTGGTTTCTAAACCTAGTGTTTCTGTGGATCCAACTAAGATAGAGGCAGTCCCCAATTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTGGGTTTAACAGGTTATTACCGATGGTTTGTGGAGAACTTTTTCCGTATAGCTACTCTTCTTACTCAGTTGACAAGGAAGAGAGCCCCTTTTGTTTGGAGCAAGACCTGTGAGGACAGTTTCCAGAACCTGAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTAATGCTTCTAAGAAAGGTTTGGGTCGTGTTTTGGTGCAACAAAGTAAGGTAGTCACTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTGCTCATGACTTAGAGTTGACAGCGGTAGTCTTTGCACTAAAGATTTAGAGACATTACTTGTATGGTGAAAAGATACAGATCTTTACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAGTTGAATATGAGGCAGCGAAGATGGCTTGAATTAGTAAAGGATTACGATTATGAGATATTGTATCATACTGGCAAAGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCGCATTCAGCAACACTTATTACCCGACAGGCCTCGTTGCACCGAGATTTTGAGAGGGCTGAGATTGCAATGTTAGTAAGGGCAGTCACTTCACAGTTAGGCCAGTTAACGGTGCAGCCCACTTTGAGGCAGAAGATCATTGATGCTTAG

mRNA sequence

ATGAGCCTATGTATTAACTATAAGGAGTTGAATAAGGTAACCGTTAAGAACAAATATCCCTTGCCTAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGTTGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTCATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAAAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGGAGGTATCCTTTCTAGGCCACGTGGTTTCTAAACCTAGTGTTTCTGTGGATCCAACTAAGATAGAGGCAGTCCCCAATTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTGGGTTTAACAGGTTATTACCGATGGTTTGTGGAGAACTTTTTCCGTATAGCTACTCTTCTTACTCAGTTGACAAGGAAGAGAGCCCCTTTTGTTTGGAGCAAGACCTGTGAGGACAGTTTCCAGAACCTGAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTAATGCTTCTAAGAAAGGTTTGGGTCGTGTTTTGGTGCAACAAAGTAAGGTAGTCACTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTGCTCATGACTTAGAGTTGACAGCGATCTTTACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAGTTGAATATGAGGCAGCGAAGATGGCTTGAATTAGTAAAGGATTACGATTATGAGATATTGTATCATACTGGCAAAGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCGCATTCAGCAACACTTATTACCCGACAGGCCTCGTTGCACCGAGATTTTGAGAGGGCTGAGATTGCAATGTTAGTAAGGGCAGTCACTTCACAGTTAGGCCAGTTAACGGTGCAGCCCACTTTGAGGCAGAAGATCATTGATGCTTAG

Coding sequence (CDS)

ATGAGCCTATGTATTAACTATAAGGAGTTGAATAAGGTAACCGTTAAGAACAAATATCCCTTGCCTAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGTTGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTCATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAAAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGGAGGTATCCTTTCTAGGCCACGTGGTTTCTAAACCTAGTGTTTCTGTGGATCCAACTAAGATAGAGGCAGTCCCCAATTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTGGGTTTAACAGGTTATTACCGATGGTTTGTGGAGAACTTTTTCCGTATAGCTACTCTTCTTACTCAGTTGACAAGGAAGAGAGCCCCTTTTGTTTGGAGCAAGACCTGTGAGGACAGTTTCCAGAACCTGAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTAATGCTTCTAAGAAAGGTTTGGGTCGTGTTTTGGTGCAACAAAGTAAGGTAGTCACTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTGCTCATGACTTAGAGTTGACAGCGATCTTTACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAGTTGAATATGAGGCAGCGAAGATGGCTTGAATTAGTAAAGGATTACGATTATGAGATATTGTATCATACTGGCAAAGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCGCATTCAGCAACACTTATTACCCGACAGGCCTCGTTGCACCGAGATTTTGAGAGGGCTGAGATTGCAATGTTAGTAAGGGCAGTCACTTCACAGTTAGGCCAGTTAACGGTGCAGCCCACTTTGAGGCAGAAGATCATTGATGCTTAG

Protein sequence

MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEHLRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSEVRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTAIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA

Homology

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BLAST of Cmc11g0294841 vs. NCBI nr
Match: KAA0067467.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 703.0 bits (1813), Expect = 1.5e-198
Identity = 356/371 (95.96%), Postives = 357/371 (96.23%), Query Frame = 0


Query: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
           MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT
Sbjct: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60

Query: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
           FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH
Sbjct: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
           LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE
Sbjct: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180

Query: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
           VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV
Sbjct: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTAIFTDHKSL 300
           PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA        
Sbjct: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300

Query: 301 KYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHR 360
                 KELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHR
Sbjct: 301 ------KELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHR 357

Query: 361 DFERAEIAMLV 372
           DFERAEIAML+
Sbjct: 361 DFERAEIAMLL 357

[Close]

BLAST of Cmc11g0294841 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 686.4 bits (1770), Expect = 1.4e-193
Identity = 353/412 (85.68%), Postives = 364/412 (88.35%), Query Frame = 0


Query: 1    MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
            M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 622  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61   FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
            FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 682  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 742  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181  VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQNLKQKLVTAPVLTV
Sbjct: 802  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 861

Query: 241  PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
            PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 862  PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 921

Query: 301  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                      IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 922  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 981

Query: 361  RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
            RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 982  RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 1033

[Close]

BLAST of Cmc11g0294841 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 684.9 bits (1766), Expect = 4.2e-193
Identity = 352/412 (85.44%), Postives = 364/412 (88.35%), Query Frame = 0


Query: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
           M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
           FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
           LR+VL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQNLKQKLVTAPVLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
           PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 490

Query: 301 ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                     IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 491 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 550

Query: 361 RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
           RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 551 RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 602

[Close]

BLAST of Cmc11g0294841 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 684.1 bits (1764), Expect = 7.1e-193
Identity = 351/412 (85.19%), Postives = 364/412 (88.35%), Query Frame = 0


Query: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
           M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 43  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 102

Query: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
           FRSRYGHY+FIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 103 FRSRYGHYQFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 162

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
           LRMVL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 163 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 222

Query: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQ LKQKLVTAPVLTV
Sbjct: 223 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTV 282

Query: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
           PDGSG+FVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 283 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 342

Query: 301 ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                     IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 343 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 402

Query: 361 RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
           RKVSHSA LITRQA LHRD ERAEIA+LV AVT QL QLTVQPTLRQ+IIDA
Sbjct: 403 RKVSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDA 454

[Close]

BLAST of Cmc11g0294841 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 684.1 bits (1764), Expect = 7.1e-193
Identity = 352/412 (85.44%), Postives = 363/412 (88.11%), Query Frame = 0


Query: 1    MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
            M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 876  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 935

Query: 61   FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
            FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 936  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 995

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 996  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1055

Query: 181  VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQ LKQKLVTAPVLTV
Sbjct: 1056 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTV 1115

Query: 241  PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
            PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 1116 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 1175

Query: 301  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                      IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 1176 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1235

Query: 361  RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
            RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 1236 RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 1287

[Close]

BLAST of Cmc11g0294841 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-66
Identity = 130/358 (36.31%), Postives = 206/358 (57.54%), Query Frame = 0


Query: 5   INYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTTFRSR 64
           I+Y++LN++T+ ++YP+P +D++  +L     F+ IDL  G+HQ+ + +  + KT F ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEHLRMV 124
            GHYE++ + FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSEVRSF 184
              L    L  +  KCEF  KE +FLGH+V+   +  +P K++A+ ++P P+   E+R+F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSK-TCEDSFQNLKQKLVTAPVLTVPDG 244
           LGLTGYYR F+ N+  IA  +T   +KR      K    ++F+ LK  ++  P+L +PD 
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDF 504

Query: 245 SGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTAIF--------- 304
              FV+ ++AS   LG VL Q    +++ SR L  HE NY A + EL AI          
Sbjct: 505 EKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHY 564

Query: 305 ---------TDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALSR 344
                    +DH+ L++    KE   +  RW   + +Y ++I Y  GK N VADALSR
Sbjct: 565 LLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc11g0294841 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.4e-66
Identity = 135/387 (34.88%), Postives = 218/387 (56.33%), Query Frame = 0


Query: 3   LCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTTFR 62
           + I+Y++LN++TV +++P+P +D++  +L     F+ IDL  G+HQ+ +    V KT F 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEHLR 122
           +++GHYE++ + FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L 
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 MVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSEVR 182
           +V E L    L  +  KCEF  +E +FLGHV++   +  +P KIEA+  +P P+   E++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 183 SFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDS-FQNLKQKLVTAPVLTVP 242
           +FLGLTGYYR F+ NF  IA  +T+  +K      +    DS F+ LK  +   P+L VP
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 243 DGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTAIF------- 302
           D +  F + ++AS   LG VL Q    ++Y SR L  HE NY   + EL AI        
Sbjct: 504 DFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFR 563

Query: 303 -----------TDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALSR 362
                      +DH+ L + +  K+ N +  RW   + ++D++I Y  GK N VADALSR
Sbjct: 564 HYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

Query: 363 KVSHSATLITRQASLHRDFERAEIAML 371
            +    T ++ Q     + + +++  +
Sbjct: 624 -IKLEETYLSEQTQHSAEEDNSDLIFI 649

[Close]

BLAST of Cmc11g0294841 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.9e-63
Identity = 129/375 (34.40%), Postives = 209/375 (55.73%), Query Frame = 0


Query: 3   LCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTTFR 62
           + +++K LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +K+SD+PKT F 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEHLR 122
           +  G YEF+ L FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 MVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSEVR 182
           +VL +L    L     K  F   +V FLG++V+   +  DP K+ A+   P P++V E++
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 183 SFLGLTGYYRWFVENFFRIATLLTQLTR-----------KRAPFVWSKTCEDSFQNLKQK 242
            FLG+T YYR F++++ ++A  LT LTR            + P    +T   SF +LK  
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 243 LVTAPVLTVPDGSGSFVIYSNASKKGLGRVLVQ----QSKVVTYASRQLKSHEQNYPAHD 302
           L ++ +L  P  +  F + ++AS   +G VL Q    + + + Y SR L   E+NY   +
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

Query: 303 LELTAI-------------------FTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEIL 344
            E+ AI                   +TDH+ L +    +  N + +RW   +++Y+ E++
Sbjct: 480 KEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELI 539

[Close]

BLAST of Cmc11g0294841 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 5.7e-60
Identity = 128/373 (34.32%), Postives = 205/373 (54.96%), Query Frame = 0


Query: 3   LCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTTFR 62
           L I++++LN+ T+ ++YP+P I  +   L  A  F+ +DL+SGYHQ+ + + D  KT+F 
Sbjct: 239 LVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFS 298

Query: 63  SRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEHLR 122
              G YEF  L FGL NA ++F   ++ V RE +     V++DD++I+S+ +++H  H+ 
Sbjct: 299 VNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHID 358

Query: 123 MVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSEVR 182
            VL+ L    +     K  F+ + V +LG +VSK     DP K++A+  +P P  V +VR
Sbjct: 359 TVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVR 418

Query: 183 SFLGLTGYYRWFVENFFRIATLLTQLTR-----------KRAPFVWSKTCEDSFQNLKQK 242
           SFLGL  YYR F+++F  IA  +T + +           K+ P  +++T  ++FQ L+  
Sbjct: 419 SFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNI 478

Query: 243 LVTAPV-LTVPDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLEL 302
           L +  V L  PD    F + ++AS  G+G VL Q+ + +T  SR LK  EQNY  ++ EL
Sbjct: 479 LASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNEREL 538

Query: 303 TA-------------------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHT 345
            A                   IFTDH+ L +    +  N + +RW   +  ++ ++ Y  
Sbjct: 539 LAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKP 598

[Close]

BLAST of Cmc11g0294841 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 232.6 bits (592), Expect = 7.4e-60
Identity = 134/367 (36.51%), Postives = 203/367 (55.31%), Query Frame = 0


Query: 3    LCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTTFR 62
            LC++Y+ LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F 
Sbjct: 648  LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63   SRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEHLR 122
            +  G YE+ V+ FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL 
Sbjct: 708  TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 123  MVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSEVR 182
             VLE L+   L  K  KC+F  +E  FLG+ +    ++    K  A+ ++P P TV + +
Sbjct: 768  TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 827

Query: 183  SFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTVPD 242
             FLG+  YYR F+ N  +IA  +      ++   W++  + +   LK  L  +PVL   +
Sbjct: 828  RFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIDKLKDALCNSPVLVPFN 887

Query: 243  GSGSFVIYSNASKKGLGRVLVQQSK------VVTYASRQLKSHEQNYPAHDLELTAIF-- 302
               ++ + ++ASK G+G VL +         VV Y S+ L+S ++NYPA +LEL  I   
Sbjct: 888  NKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKA 947

Query: 303  ----------------TDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVA 346
                            TDH SL     + E   R +RWL+ +  YD+ + Y  G  NVVA
Sbjct: 948  LHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVA 1007

[Close]

BLAST of Cmc11g0294841 vs. ExPASy TrEMBL
Match: A0A5A7VJV1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001400 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 7.2e-199
Identity = 356/371 (95.96%), Postives = 357/371 (96.23%), Query Frame = 0


Query: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
           MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT
Sbjct: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60

Query: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
           FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH
Sbjct: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
           LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE
Sbjct: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180

Query: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
           VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV
Sbjct: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTAIFTDHKSL 300
           PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA        
Sbjct: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300

Query: 301 KYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHR 360
                 KELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHR
Sbjct: 301 ------KELNMRQRRWLELVKDYDYEILYHTGKANVVADALSRKVSHSATLITRQASLHR 357

Query: 361 DFERAEIAMLV 372
           DFERAEIAML+
Sbjct: 361 DFERAEIAMLL 357

[Close]

BLAST of Cmc11g0294841 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 6.9e-194
Identity = 353/412 (85.68%), Postives = 364/412 (88.35%), Query Frame = 0


Query: 1    MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
            M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 622  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61   FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
            FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 682  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 742  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181  VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQNLKQKLVTAPVLTV
Sbjct: 802  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 861

Query: 241  PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
            PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 862  PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 921

Query: 301  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                      IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 922  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 981

Query: 361  RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
            RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 982  RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 1033

[Close]

BLAST of Cmc11g0294841 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 2.0e-193
Identity = 352/412 (85.44%), Postives = 364/412 (88.35%), Query Frame = 0


Query: 1   MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
           M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
           FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
           LR+VL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQNLKQKLVTAPVLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
           PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 490

Query: 301 ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                     IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 491 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 550

Query: 361 RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
           RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 551 RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 602

[Close]

BLAST of Cmc11g0294841 vs. ExPASy TrEMBL
Match: A0A5A7THE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00030 PE=4 SV=1)

HSP 1 Score: 684.1 bits (1764), Expect = 3.4e-193
Identity = 352/412 (85.44%), Postives = 363/412 (88.11%), Query Frame = 0


Query: 1    MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
            M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 780  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 839

Query: 61   FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
            FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 840  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 899

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 900  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPVKIEAVTGWTRPSTVSE 959

Query: 181  VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQNLKQKLVTAPVL V
Sbjct: 960  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIV 1019

Query: 241  PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
            PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 1020 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 1079

Query: 301  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                      IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 1080 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1139

Query: 361  RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
            RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 1140 RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 1191

[Close]

BLAST of Cmc11g0294841 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 684.1 bits (1764), Expect = 3.4e-193
Identity = 352/412 (85.44%), Postives = 363/412 (88.11%), Query Frame = 0


Query: 1    MSLCINYKELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTT 60
            M LCI+Y+ELNKVTVKN+YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT 
Sbjct: 876  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 935

Query: 61   FRSRYGHYEFIVLSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKAEHEEH 120
            FRSRYGHYEFIV+SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKT+AEHEEH
Sbjct: 936  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 995

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKEVSFLGHVVSKPSVSVDPTKIEAVPNWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLK+VSFLGHVVSK  VSVDP KIEAV  W RPSTVSE
Sbjct: 996  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1055

Query: 181  VRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYR FVENF RIAT LTQLTRK APFVWSK CEDSFQ LKQKLVTAPVLTV
Sbjct: 1056 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTV 1115

Query: 241  PDGSGSFVIYSNASKKGLGRVLVQQSKVVTYASRQLKSHEQNYPAHDLELTA-------- 300
            PDGSGSFVIYS+ASKKGLG VL+QQ KVV YASRQLKSHEQNYP HDLEL A        
Sbjct: 1116 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 1175

Query: 301  ----------IFTDHKSLKYFFTQKELNMRQRRWLELVKDYDYEILYHTGKANVVADALS 360
                      IFTDHKSLKYFFTQKELNMRQRRWLELVKDYD EILYH GKANVVADALS
Sbjct: 1176 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1235

Query: 361  RKVSHSATLITRQASLHRDFERAEIAMLVRAVTSQLGQLTVQPTLRQKIIDA 395
            RKVSHSA LITRQA LHRD ERAEIA+ V AVT QL QLTVQPTLRQ+IIDA
Sbjct: 1236 RKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 1287

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BLAST of Cmc11g0294841 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-23
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 120 HLRMVLETLRANKLYAKFSKCEFWLKEVSFLG--HVVSKPSVSVDPTKIEAVPNWPRPST 179
           HL MVL+    ++ YA   KC F   ++++LG  H++S   VS DP K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLTGYYRWFVENFFRIATLLTQLTRKRAPFVWSKTCEDSFQNLKQKLVTAPV 239
            +E+R FLGLTGYYR FV+N+ +I   LT+L +K +   W++    +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 240 LTVPDGSGSFV 249
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc11g0294841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067467.1	1.5e-198	95.96	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	1.4e-193	85.68	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	4.2e-193	85.44	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	7.1e-193	85.19	pol protein [Cucumis melo subsp. melo]	[more]
TYK01613.1	7.1e-193	85.44	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0294841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-66	36.31	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.4e-66	34.88	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.9e-63	34.40	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	5.7e-60	34.32	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q99315	7.4e-60	36.51	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0294841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJV1	7.2e-199	95.96	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001400 PE...	[more]
A0A5A7U330	6.9e-194	85.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7SPZ2	2.0e-193	85.44	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE...	[more]
A0A5A7THE6	3.4e-193	85.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5D3BPI1	3.4e-193	85.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc11g0294841 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.0e-23	41.98	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 2.9E-25 score: 89.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 10.24905
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..79 e-value: 1.0E-65 score: 223.0
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..305
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..305
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 248..345 e-value: 9.49573E-38 score: 130.69
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..154 e-value: 2.14315E-78 score: 237.494
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 1.0E-65 score: 223.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..247 e-value: 1.3E-28 score: 100.8
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 217..308 e-value: 1.3E-23 score: 82.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0294841.1	Cmc11g0294841.1	mRNA