Cmc11g0294831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 11714941 .. 11715732 (+)
RNA-Seq Expression	Cmc11g0294831
Synteny	Cmc11g0294831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCTATGTATTGACTACAGAGAGTTGAATAAGGTAACTATTAAAAACAAATATTCCTTGCCCAGGATCGATGATCTGTTTGATCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTCCGATCGGGATATCATCAGTTGAGGATTAAGGATAGTGATATACTGAAAACAACCTTTCGTTCCAGATATAGGAACTATGAGTTTATTGTGATGTTCTTTGGTTTGACGAATGCTCCAACGGTGTTTATGGATTTGGTGAACATAGTGTTTAAGGAGTTCCTAGACACTTTTGTGATTGTATTTGTTGACGATATTTTGATATATTCCAAGACAGAGGCAAAACATGAGGAGCAGTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTGTATGTGAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCATGTACCTTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTCCTATGGATCCAGCTAAGATAGAGGCAATCACCTGTTGGCCCCGACCTTCCATAGTCAGTGAGGTTTGTAGCTTTCTGGGTTTAGTAGGTTATTACCGACGGTTTGTGGAGAACTTCTCCCGTATAGCTACTCCTCTTAGTCAGTTAACCAGAAAGGGAGCTTCTTTTGTTTGGGGCAAGGCCTGTGATGACAGTTTTCAAAACCTTAAACAAAAACTAGTTACTGCATCGATTCTTACTGTACCGTATGGTTCAGGGAGTTTTGTCATTTATAGTGATGCTTCTAAGAAATGTTTGGGTTGTGTTCTGATGTAG

mRNA sequence

ATGCACCTATGTATTGACTACAGAGAGTTGAATAAGGTAACTATTAAAAACAAATATTCCTTGCCCAGGATCGATGATCTGTTTGATCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTCCGATCGGGATATCATCAGTTGAGGATTAAGGATAGTGATATACTGAAAACAACCTTTCGTTCCAGATATAGGAACTATGAGTTTATTGTGATGTTCTTTGGTTTGACGAATGCTCCAACGGTGTTTATGGATTTGGTGAACATAGTGTTTAAGGAGTTCCTAGACACTTTTGTGATTGTATTTGTTGACGATATTTTGATATATTCCAAGACAGAGGCAAAACATGAGGAGCAGTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTGTATGTGAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCATGTACCTTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTCCTATGGATCCAGCTAAGATAGAGGCAATCACCTGTTGGCCCCGACCTTCCATAGTCAGTGAGGTTTGTAGCTTTCTGGGTTTAGTAGGTTATTACCGACGGTTTGTGGAGAACTTCTCCCGTATAGCTACTCCTCTTAGTCAGTTAACCAGAAAGGGAGCTTCTTTTGTTTGGGGCAAGGCCTGTGATGACAGTTTTCAAAACCTTAAACAAAAACTAGTTACTGCATCGATTCTTACTGTACCGTATGGTTCAGGGAGTTTTGTCATTTATAGTGATGCTTCTAAGAAATGTTTGGGTTGTGTTCTGATGTAG

Coding sequence (CDS)

ATGCACCTATGTATTGACTACAGAGAGTTGAATAAGGTAACTATTAAAAACAAATATTCCTTGCCCAGGATCGATGATCTGTTTGATCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTCCGATCGGGATATCATCAGTTGAGGATTAAGGATAGTGATATACTGAAAACAACCTTTCGTTCCAGATATAGGAACTATGAGTTTATTGTGATGTTCTTTGGTTTGACGAATGCTCCAACGGTGTTTATGGATTTGGTGAACATAGTGTTTAAGGAGTTCCTAGACACTTTTGTGATTGTATTTGTTGACGATATTTTGATATATTCCAAGACAGAGGCAAAACATGAGGAGCAGTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTGTATGTGAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCATGTACCTTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTCCTATGGATCCAGCTAAGATAGAGGCAATCACCTGTTGGCCCCGACCTTCCATAGTCAGTGAGGTTTGTAGCTTTCTGGGTTTAGTAGGTTATTACCGACGGTTTGTGGAGAACTTCTCCCGTATAGCTACTCCTCTTAGTCAGTTAACCAGAAAGGGAGCTTCTTTTGTTTGGGGCAAGGCCTGTGATGACAGTTTTCAAAACCTTAAACAAAAACTAGTTACTGCATCGATTCTTACTGTACCGTATGGTTCAGGGAGTTTTGTCATTTATAGTGATGCTTCTAAGAAATGTTTGGGTTGTGTTCTGATGTAG

Protein sequence

MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKCLGCVLM

Homology

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BLAST of Cmc11g0294831 vs. NCBI nr
Match: KAA0067464.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.0 bits (1216), Expect = 1.7e-129
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 23  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPT 82
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPT
Sbjct: 230 QIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPT 289

Query: 83  VFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEF 142
           VFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEF
Sbjct: 290 VFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEF 349

Query: 143 WLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIA 202
           WLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIA
Sbjct: 350 WLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIA 409

Query: 203 TPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKC 258
           TPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKC
Sbjct: 410 TPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKC 464

[Close]

BLAST of Cmc11g0294831 vs. NCBI nr
Match: KAA0046134.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-123
Identity = 225/263 (85.55%), Postives = 239/263 (90.87%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           M LCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD D+ KTT
Sbjct: 536 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTT 595

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FR RY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF+DDILIYSKTEAKHEE 
Sbjct: 596 FRFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAKHEEH 655

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           LRMVL+TLR NKLY KFSKCEFWLK V FLGHVVSKAGV +DPAKIEA+T W RPS VSE
Sbjct: 656 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 715

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           V SFLGL GYYRRFVENFSRIATPL+QLTRKGASFVW KAC+DSFQNLKQKLVTA +LTV
Sbjct: 716 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTV 775

Query: 241 PYGSGSFVIYSDASKKCLGCVLM 264
           P GSGSFVIYSDASKK LGCVLM
Sbjct: 776 PDGSGSFVIYSDASKKGLGCVLM 798

[Close]

BLAST of Cmc11g0294831 vs. NCBI nr
Match: KAA0057668.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.4 bits (1165), Expect = 1.4e-123
Identity = 226/263 (85.93%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           M LCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD D+ KT 
Sbjct: 366 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 425

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FRSRY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF+DDILIYSKTEA+HEE 
Sbjct: 426 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 485

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           LRMVL+TLR NKLY KFSKCEFWLKHV FLGHVVSKAGV +DPAKIEA T W RPS VSE
Sbjct: 486 LRMVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAGVSVDPAKIEADTGWTRPSTVSE 545

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           V SFLGL GYYRRFVENFSRIATPL+QLTRKGA FVW KAC+DSFQNLKQKLVTA ILTV
Sbjct: 546 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTV 605

Query: 241 PYGSGSFVIYSDASKKCLGCVLM 264
           P GSGSFVIYSDASKK LGCVLM
Sbjct: 606 PDGSGSFVIYSDASKKGLGCVLM 628

[Close]

BLAST of Cmc11g0294831 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 452.2 bits (1162), Expect = 3.0e-123
Identity = 224/263 (85.17%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           M LCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD D+ KT 
Sbjct: 622 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FRSRY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF+DDILIYSKTEA+HEE 
Sbjct: 682 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           LRMVL+TLR NKLY KFSKCEFWLK V FLGHVVSKAGV +DPAKIEA+T W RPS VSE
Sbjct: 742 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           V SFLGL GYYRRFVENFSRIATPL+QLTRKGA FVW KAC+DSFQNLKQKLVTA +LTV
Sbjct: 802 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 861

Query: 241 PYGSGSFVIYSDASKKCLGCVLM 264
           P GSGSFVIYSDASKK LGCVLM
Sbjct: 862 PDGSGSFVIYSDASKKGLGCVLM 884

[Close]

BLAST of Cmc11g0294831 vs. NCBI nr
Match: KAA0036204.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 4.0e-123
Identity = 222/263 (84.41%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1    MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
            MHLCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD D+LKT 
Sbjct: 763  MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVLKTA 822

Query: 61   FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
            FRSRY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF++DILIYSKTEA+HE+ 
Sbjct: 823  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFINDILIYSKTEAEHEKH 882

Query: 121  LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
            LR+VL+TLR NKLY KFSKCEFWLKHV FLGHVVSKAGV +DPAKIEA+T W RPS VSE
Sbjct: 883  LRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 942

Query: 181  VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
            V SFLGL GYYR FVENFSRIATPL++LTRKGA FVW KAC+DSFQNLKQKLVTA +LTV
Sbjct: 943  VRSFLGLAGYYRWFVENFSRIATPLTELTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1002

Query: 241  PYGSGSFVIYSDASKKCLGCVLM 264
            P GSGSFVIYSDASKK LGCVLM
Sbjct: 1003 PDGSGSFVIYSDASKKGLGCVLM 1025

[Close]

BLAST of Cmc11g0294831 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.8e-46
Identity = 93/261 (35.63%), Postives = 155/261 (59.39%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFR 62
           + IDYR+LN++T+ +++ +P +D++  +L     F+ IDL  G+HQ+ +    + KT F 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLR 122
           +++ +YE++ M FGL NAP  F   +N + +  L+   +V++DDI+++S +  +H + L 
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 MVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVC 182
           +V E L    L ++  KCEF  +   FLGHV++  G+  +P KIEAI  +P P+   E+ 
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 183 SFLGLVGYYRRFVENFSRIATPLSQLTRKGASF-VWGKACDDSFQNLKQKLVTASILTVP 242
           +FLGL GYYR+F+ NF+ IA P+++  +K           D +F+ LK  +    IL VP
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 243 YGSGSFVIYSDASKKCLGCVL 263
             +  F + +DAS   LG VL
Sbjct: 504 DFTKKFTLTTDASDVALGAVL 524

[Close]

BLAST of Cmc11g0294831 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-46
Identity = 93/259 (35.91%), Postives = 154/259 (59.46%), Query Frame = 0


Query: 5   IDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSR 64
           IDYR+LN++TI ++Y +P +D++  +L     F+ IDL  G+HQ+ + +  I KT F ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMV 124
             +YE++ M FGL NAP  F   +N + +  L+   +V++DDI+I+S +  +H   +++V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSF 184
              L    L ++  KCEF  K   FLGH+V+  G+  +P K++AI  +P P+   E+ +F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGK-ACDDSFQNLKQKLVTASILTVPYG 244
           LGL GYYR+F+ N++ IA P++   +K       K    ++F+ LK  ++   IL +P  
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDF 504

Query: 245 SGSFVIYSDASKKCLGCVL 263
              FV+ +DAS   LG VL
Sbjct: 505 EKKFVLTTDASNLALGAVL 523

[Close]

BLAST of Cmc11g0294831 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-44
Identity = 94/271 (34.69%), Postives = 152/271 (56.09%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFR 62
           + +D++ LN VTI + Y +P I+     L  A  F+ +DL SG+HQ+ +K+SDI KT F 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLR 122
           +    YEF+ + FGL NAP +F  +++ + +E +     V++DDI+++S+    H + LR
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 MVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVC 182
           +VL +L    L V   K  F    V FLG++V+  G+  DP K+ AI+  P P+ V E+ 
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 183 SFLGLVGYYRRFVENFSRIATPLSQLTR-----------KGASFVWGKACDDSFQNLKQK 242
            FLG+  YYR+F+++++++A PL+ LTR                   +    SF +LK  
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 243 LVTASILTVPYGSGSFVIYSDASKKCLGCVL 263
           L ++ IL  P  +  F + +DAS   +G VL
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVL 450

[Close]

BLAST of Cmc11g0294831 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42
Identity = 97/260 (37.31%), Postives = 146/260 (56.15%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFR 62
           LC+DYR LNK TI + + LPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  SRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLR 122
           +    YE+ VM FGL NAP+ F   +   F++    FV V++DDILI+S++  +H + L 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 123 MVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVC 182
            VLE L+   L VK  KC+F  +   FLG+ +    +     K  AI  +P P  V +  
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 853

Query: 183 SFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPY 242
            FLG++ YYRRF+ N S+IA P+       +   W +  D + + LK  L  + +L    
Sbjct: 854 RFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIEKLKAALCNSPVLVPFN 913

Query: 243 GSGSFVIYSDASKKCLGCVL 263
              ++ + +DASK  +G VL
Sbjct: 914 NKANYRLTTDASKDGIGAVL 929

[Close]

BLAST of Cmc11g0294831 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-42
Identity = 88/262 (33.59%), Postives = 151/262 (57.63%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           + + +DY+ LNK    N Y LP I+ L  ++QG+T+F+K+DL+S YH +R++  D  K  
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FR     +E++VM +G++ AP  F   +N +  E  ++ V+ ++DDILI+SK+E++H + 
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           ++ VL+ L+   L +  +KCEF    V F+G+ +S+ G       I+ +  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           +  FLG V Y R+F+   S++  PL+ L +K   + W      + +N+KQ LV+  +L  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PYGSGSFVIYSDASKKCLGCVL 263
              S   ++ +DAS   +G VL
Sbjct: 702 FDFSKKILLETDASDVAVGAVL 723

[Close]

BLAST of Cmc11g0294831 vs. ExPASy TrEMBL
Match: A0A5A7VJC9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001360 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 8.1e-130
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 23  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPT 82
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPT
Sbjct: 230 QIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTTFRSRYRNYEFIVMFFGLTNAPT 289

Query: 83  VFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEF 142
           VFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEF
Sbjct: 290 VFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQLRMVLETLRANKLYVKFSKCEF 349

Query: 143 WLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIA 202
           WLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIA
Sbjct: 350 WLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSEVCSFLGLVGYYRRFVENFSRIA 409

Query: 203 TPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKC 258
           TPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKC
Sbjct: 410 TPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTVPYGSGSFVIYSDASKKC 464

[Close]

BLAST of Cmc11g0294831 vs. ExPASy TrEMBL
Match: A0A5A7TSV6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00740 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 5.1e-124
Identity = 225/263 (85.55%), Postives = 239/263 (90.87%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           M LCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDL+SGYHQLRIKD D+ KTT
Sbjct: 536 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQSGYHQLRIKDGDVPKTT 595

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FR RY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF+DDILIYSKTEAKHEE 
Sbjct: 596 FRFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAKHEEH 655

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           LRMVL+TLR NKLY KFSKCEFWLK V FLGHVVSKAGV +DPAKIEA+T W RPS VSE
Sbjct: 656 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 715

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           V SFLGL GYYRRFVENFSRIATPL+QLTRKGASFVW KAC+DSFQNLKQKLVTA +LTV
Sbjct: 716 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGASFVWSKACEDSFQNLKQKLVTAPVLTV 775

Query: 241 PYGSGSFVIYSDASKKCLGCVLM 264
           P GSGSFVIYSDASKK LGCVLM
Sbjct: 776 PDGSGSFVIYSDASKKGLGCVLM 798

[Close]

BLAST of Cmc11g0294831 vs. ExPASy TrEMBL
Match: A0A5A7URA1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold126G00120 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.6e-124
Identity = 226/263 (85.93%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           M LCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD D+ KT 
Sbjct: 366 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 425

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FRSRY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF+DDILIYSKTEA+HEE 
Sbjct: 426 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 485

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           LRMVL+TLR NKLY KFSKCEFWLKHV FLGHVVSKAGV +DPAKIEA T W RPS VSE
Sbjct: 486 LRMVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAGVSVDPAKIEADTGWTRPSTVSE 545

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           V SFLGL GYYRRFVENFSRIATPL+QLTRKGA FVW KAC+DSFQNLKQKLVTA ILTV
Sbjct: 546 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTV 605

Query: 241 PYGSGSFVIYSDASKKCLGCVLM 264
           P GSGSFVIYSDASKK LGCVLM
Sbjct: 606 PDGSGSFVIYSDASKKGLGCVLM 628

[Close]

BLAST of Cmc11g0294831 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.5e-123
Identity = 224/263 (85.17%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
           M LCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD D+ KT 
Sbjct: 622 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61  FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
           FRSRY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF+DDILIYSKTEA+HEE 
Sbjct: 682 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
           LRMVL+TLR NKLY KFSKCEFWLK V FLGHVVSKAGV +DPAKIEA+T W RPS VSE
Sbjct: 742 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181 VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
           V SFLGL GYYRRFVENFSRIATPL+QLTRKGA FVW KAC+DSFQNLKQKLVTA +LTV
Sbjct: 802 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 861

Query: 241 PYGSGSFVIYSDASKKCLGCVLM 264
           P GSGSFVIYSDASKK LGCVLM
Sbjct: 862 PDGSGSFVIYSDASKKGLGCVLM 884

[Close]

BLAST of Cmc11g0294831 vs. ExPASy TrEMBL
Match: A0A5A7SY46 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00790 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.9e-123
Identity = 222/263 (84.41%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1    MHLCIDYRELNKVTIKNKYSLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDILKTT 60
            MHLCIDYRELNKVT+KN+Y LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD D+LKT 
Sbjct: 763  MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVLKTA 822

Query: 61   FRSRYRNYEFIVMFFGLTNAPTVFMDLVNIVFKEFLDTFVIVFVDDILIYSKTEAKHEEQ 120
            FRSRY +YEFIVM FGLTNAP VFMDL+N VF+EFLDTFVIVF++DILIYSKTEA+HE+ 
Sbjct: 823  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFINDILIYSKTEAEHEKH 882

Query: 121  LRMVLETLRANKLYVKFSKCEFWLKHVPFLGHVVSKAGVPMDPAKIEAITCWPRPSIVSE 180
            LR+VL+TLR NKLY KFSKCEFWLKHV FLGHVVSKAGV +DPAKIEA+T W RPS VSE
Sbjct: 883  LRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 942

Query: 181  VCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASILTV 240
            V SFLGL GYYR FVENFSRIATPL++LTRKGA FVW KAC+DSFQNLKQKLVTA +LTV
Sbjct: 943  VRSFLGLAGYYRWFVENFSRIATPLTELTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1002

Query: 241  PYGSGSFVIYSDASKKCLGCVLM 264
            P GSGSFVIYSDASKK LGCVLM
Sbjct: 1003 PDGSGSFVIYSDASKKGLGCVLM 1025

[Close]

BLAST of Cmc11g0294831 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-21
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 121 LRMVLETLRANKLYVKFSKCEFWLKHVPFLG--HVVSKAGVPMDPAKIEAITCWPRPSIV 180
           L MVL+    ++ Y    KC F    + +LG  H++S  GV  DPAK+EA+  WP P   
Sbjct: 4   LGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNT 63

Query: 181 SEVCSFLGLVGYYRRFVENFSRIATPLSQLTRKGASFVWGKACDDSFQNLKQKLVTASIL 240
           +E+  FLGL GYYRRFV+N+ +I  PL++L +K  S  W +    +F+ LK  + T  +L
Sbjct: 64  TELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVL 123

Query: 241 TVP 242
            +P
Sbjct: 124 ALP 125

The following BLAST results are available for this feature:

BLAST of Cmc11g0294831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067464.1	1.7e-129	99.57	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046134.1	1.0e-123	85.55	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0057668.1	1.4e-123	85.93	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	3.0e-123	85.17	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036204.1	4.0e-123	84.41	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0294831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.8e-46	35.63	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.1e-46	35.91	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	8.5e-44	34.69	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	1.6e-42	37.31	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	2.1e-42	33.59	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0294831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJC9	8.1e-130	99.57	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TSV6	5.1e-124	85.55	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7URA1	6.6e-124	85.93	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5A7U330	1.5e-123	85.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7SY46	1.9e-123	84.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc11g0294831 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.6e-21	39.84	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 8.9E-22 score: 77.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..252 e-value: 1.2E-27 score: 97.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 3.1E-61 score: 208.3
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 217..263 e-value: 1.7E-9 score: 37.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..79 e-value: 3.1E-61 score: 208.3
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..262
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..262
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..154 e-value: 1.65532E-71 score: 215.152
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0294831.1	Cmc11g0294831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding