Cmc11g0294701 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294701
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr11: 11499845 .. 11500441 (+)
RNA-Seq Expression	Cmc11g0294701
Synteny	Cmc11g0294701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAAGGATTTAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTACGCTATGTATTATCATATGCCTATACGTAGATGACATGCTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGTAAACTTTGACATGACAGACTTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGAACTAAAAATGGAATTTCTTTAGATCAATCTCATTACATAAAAAAGATTCTAAAGAAGTACAACTACTTCGAAAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTGGTGACAGTGTTAACCAATCTGAGTACGCTAGTATCATAGGTAGTTTGAGGTATGCTACTTATTGCATTAGACCAGACATAGTTTACGCCGTAGGATTAGTATGTAGGTTTACCAGCAGACCCAGTCTAAAACACTTGAATGCCATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAGGTTTCCCACTGTACTTGAAGGCTACAACGATGCTGATTGGAACTCTCTCTAA

mRNA sequence

ATGTTAAAAGGATTTAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTACGCTATGTATTATCATATGCCTATACGTAGATGACATGCTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGTAAACTTTGACATGACAGACTTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGAACTAAAAATGGAATTTCTTTAGATCAATCTCATTACATAAAAAAGATTCTAAAGAAGTACAACTACTTCGAAAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTGGTGACAGTGTTAACCAATCTGAGTACGCTAGTATCATAGGTAGTTTGAGGTATGCTACTTATTGCATTAGACCAGACATAGTTTACGCCGTAGGATTAGTATGTAGGTTTACCAGCAGACCCAGTCTAAAACACTTGAATGCCATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAGGTTTCCCACTGTACTTGAAGGCTACAACGATGCTGATTGGAACTCTCTCTAA

Coding sequence (CDS)

ATGTTAAAAGGATTTAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTACGCTATGTATTATCATATGCCTATACGTAGATGACATGCTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGTAAACTTTGACATGACAGACTTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGAACTAAAAATGGAATTTCTTTAGATCAATCTCATTACATAAAAAAGATTCTAAAGAAGTACAACTACTTCGAAAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTGGTGACAGTGTTAACCAATCTGAGTACGCTAGTATCATAGGTAGTTTGAGGTATGCTACTTATTGCATTAGACCAGACATAGTTTACGCCGTAGGATTAGTATGTAGGTTTACCAGCAGACCCAGTCTAAAACACTTGAATGCCATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAGGTTTCCCACTGTACTTGAAGGCTACAACGATGCTGATTGGAACTCTCTCTAA

Protein sequence

MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNRFPTVLEGYNDADWNSL

Homology

[Close]

BLAST of Cmc11g0294701 vs. NCBI nr
Match: TYK09543.1 (hypothetical protein E5676_scaffold757G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 3.1e-104
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDM DL 
Sbjct: 59  MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLC 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKITRTKN ISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTG SVNQ
Sbjct: 119 EADVILGIKITRTKNEISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGGSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEYASIIGSLRYATYCIRP+I YAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY
Sbjct: 179 SEYASIIGSLRYATYCIRPNIAYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNSL 199
           NRFP VLEGYNDADWNSL
Sbjct: 239 NRFPAVLEGYNDADWNSL 256

[Close]

BLAST of Cmc11g0294701 vs. NCBI nr
Match: KAA0032842.1 (hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK21198.1 hypothetical protein E5676_scaffold359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 367.1 bits (941), Expect = 9.7e-98
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESDKCIYYK EG LCIIICLYVDDMLIFGSNLHVINDVKSML+VNFDM DLG
Sbjct: 59  MSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLG 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKITR +NGISLDQSHYI+KILKKYNYF+SKPACTPYDSSVKLFKNTGDSVNQ
Sbjct: 119 EADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEYASIIGSLRYA  C RPDI YAVGL+CRFTSRPSL+H NAIERVMRYLKK QNLGLHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNS 198
           N+FP VLEGYNDADWNS
Sbjct: 239 NKFPAVLEGYNDADWNS 255

[Close]

BLAST of Cmc11g0294701 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 361.7 bits (927), Expect = 4.1e-96
Identity = 176/198 (88.89%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESDKCIYYKTEG LCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDM DLG
Sbjct: 59  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLG 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKITRT+NGI LDQSHYI+K LKKYNYF+SKP CTPYDSSVKLFKNTGDSVNQ
Sbjct: 119 EADVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           +EYASIIGSLRYA    RP I YAVGL+CRFTSRPSL+H NAIERVMRYLKKTQNLGLHY
Sbjct: 179 TEYASIIGSLRYAVDYTRPSIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNSL 199
           N+FP VLEGY+DADWNSL
Sbjct: 239 NKFPVVLEGYSDADWNSL 256

[Close]

BLAST of Cmc11g0294701 vs. NCBI nr
Match: TYK00058.1 (hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 361.3 bits (926), Expect = 5.3e-96
Identity = 175/198 (88.38%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESD+CIYYKTEG +CIIICLYVDDMLIFGSNLH+INDVKSMLS NFDM DLG
Sbjct: 59  MSKGFKVNESDECIYYKTEGRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLG 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKI RT+NGISLDQSHYI+KILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ
Sbjct: 119 EADVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEYASIIGSLRYA  C RPDI Y +GL+CRFTSR SL+H NAIERVMRYLKKTQNLGLHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNSL 199
           N+F TVLEGY DADWNSL
Sbjct: 239 NKFSTVLEGYIDADWNSL 256

[Close]

BLAST of Cmc11g0294701 vs. NCBI nr
Match: KAA0058878.1 (putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 4.5e-95
Identity = 172/198 (86.87%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESDKC+YYKT+G LCIIICLYVDDML F SNLHVINDVKSMLSVNFDM DLG
Sbjct: 175 MSKGFKVNESDKCMYYKTKGRLCIIICLYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLG 234

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EAD+ILGIKITRTKNGISLDQS+YI+KILKKYNYF+SKPACTPYDSSVKLFKNTGD+VNQ
Sbjct: 235 EADIILGIKITRTKNGISLDQSYYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQ 294

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEY SIIGSLRY   C RPDI YAVGL+CRFTSRP L+H NAIER+MRYLKKTQNLGLHY
Sbjct: 295 SEYTSIIGSLRYVADCTRPDIAYAVGLLCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHY 354

Query: 181 NRFPTVLEGYNDADWNSL 199
           N+F TVLEGYND DWNSL
Sbjct: 355 NKFSTVLEGYNDVDWNSL 372

[Close]

BLAST of Cmc11g0294701 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-31
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 10   SDKCIYYK--TEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEADVILG 69
            SD C+Y+K  +E    II+ LYVDDMLI G +  +I  +K  LS +FDM DLG A  ILG
Sbjct: 988  SDPCVYFKRFSENNF-IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILG 1047

Query: 70   IKIT--RTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSE--- 129
            +KI   RT   + L Q  YI+++L+++N   +KP  TP    +KL K    +  + +   
Sbjct: 1048 MKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNM 1107

Query: 130  ----YASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGL 189
                Y+S +GSL YA  C RPDI +AVG+V RF   P  +H  A++ ++RYL+ T    L
Sbjct: 1108 AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1167

Query: 190  HYNRFPTVLEGYNDAD 195
             +     +L+GY DAD
Sbjct: 1168 CFGGSDPILKGYTDAD 1182

[Close]

BLAST of Cmc11g0294701 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 69/194 (35.57%), Postives = 107/194 (55.15%), Query Frame = 0


Query: 4    GFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEAD 63
            GF  + SD  ++    G   + + +YVDD+LI G++  ++++    LS  F + D  E  
Sbjct: 1125 GFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELH 1184

Query: 64   VILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSV-NQSE 123
              LGI+  R   G+ L Q  YI  +L + N   +KP  TP   S KL   +G  + + +E
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244

Query: 124  YASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNR 183
            Y  I+GSL+Y  +  RPDI YAV  + +F   P+ +HL A++R++RYL  T N G+   +
Sbjct: 1245 YRGIVGSLQYLAF-TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 184  FPTV-LEGYNDADW 196
              T+ L  Y+DADW
Sbjct: 1305 GNTLSLHAYSDADW 1317

[Close]

BLAST of Cmc11g0294701 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-24
Identity = 69/195 (35.38%), Postives = 105/195 (53.85%), Query Frame = 0


Query: 7    VNES-DKCIYYKTEGTL--CIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEAD 66
            VN S D+CIY   +G +   I + LYVDD++I   ++  +N+ K  L   F MTDL E  
Sbjct: 1062 VNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIK 1121

Query: 67   VILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEY 126
              +GI+I   ++ I L QS Y+KKIL K+N        TP  S +       D    +  
Sbjct: 1122 HFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC 1181

Query: 127  ASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNR- 186
             S+IG L Y   C RPD+  AV ++ R++S+ + +    ++RV+RYLK T ++ L + + 
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKN 1241

Query: 187  --FPTVLEGYNDADW 196
              F   + GY D+DW
Sbjct: 1242 LAFENKIIGYVDSDW 1256

[Close]

BLAST of Cmc11g0294701 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 65/194 (33.51%), Postives = 105/194 (54.12%), Query Frame = 0


Query: 4    GFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEAD 63
            GF  + SD  ++    G   I + +YVDD+LI G++  ++      LS  F + +  +  
Sbjct: 1108 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1167

Query: 64   VILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSV-NQSE 123
              LGI+  R   G+ L Q  Y   +L + N   +KP  TP  +S KL  ++G  + + +E
Sbjct: 1168 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1227

Query: 124  YASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNR 183
            Y  I+GSL+Y  +  RPD+ YAV  + ++   P+  H NA++RV+RYL  T + G+   +
Sbjct: 1228 YRGIVGSLQYLAF-TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 184  FPTV-LEGYNDADW 196
              T+ L  Y+DADW
Sbjct: 1288 GNTLSLHAYSDADW 1300

[Close]

BLAST of Cmc11g0294701 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-21
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 26  ICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEADVILGIKITRTKNGISLDQSHYI 85
           + LYVDD+L+ GS+  ++N +   LS  F M DLG     LGI+I    +G+ L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 86  KKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYATYCIRPDIVYAV 145
           ++IL      + KP  TP    +    +T    + S++ SI+G+L+Y T   RPDI YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAV 122

Query: 146 GLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNRFPTV-LEGYNDADW 196
            +VC+    P+L   + ++RV+RY+K T   GL+ ++   + ++ + D+DW
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDW 172

[Close]

BLAST of Cmc11g0294701 vs. ExPASy TrEMBL
Match: A0A5D3CCG4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00240 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDM DL 
Sbjct: 59  MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLC 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKITRTKN ISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTG SVNQ
Sbjct: 119 EADVILGIKITRTKNEISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGGSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEYASIIGSLRYATYCIRP+I YAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY
Sbjct: 179 SEYASIIGSLRYATYCIRPNIAYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNSL 199
           NRFP VLEGYNDADWNSL
Sbjct: 239 NRFPAVLEGYNDADWNSL 256

[Close]

BLAST of Cmc11g0294701 vs. ExPASy TrEMBL
Match: A0A5A7SNZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00010 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.7e-98
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESDKCIYYK EG LCIIICLYVDDMLIFGSNLHVINDVKSML+VNFDM DLG
Sbjct: 59  MSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLG 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKITR +NGISLDQSHYI+KILKKYNYF+SKPACTPYDSSVKLFKNTGDSVNQ
Sbjct: 119 EADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEYASIIGSLRYA  C RPDI YAVGL+CRFTSRPSL+H NAIERVMRYLKK QNLGLHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNS 198
           N+FP VLEGYNDADWNS
Sbjct: 239 NKFPAVLEGYNDADWNS 255

[Close]

BLAST of Cmc11g0294701 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.0e-96
Identity = 176/198 (88.89%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESDKCIYYKTEG LCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDM DLG
Sbjct: 59  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLG 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKITRT+NGI LDQSHYI+K LKKYNYF+SKP CTPYDSSVKLFKNTGDSVNQ
Sbjct: 119 EADVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           +EYASIIGSLRYA    RP I YAVGL+CRFTSRPSL+H NAIERVMRYLKKTQNLGLHY
Sbjct: 179 TEYASIIGSLRYAVDYTRPSIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNSL 199
           N+FP VLEGY+DADWNSL
Sbjct: 239 NKFPVVLEGYSDADWNSL 256

[Close]

BLAST of Cmc11g0294701 vs. ExPASy TrEMBL
Match: A0A5D3BLQ7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00040 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.6e-96
Identity = 175/198 (88.38%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESD+CIYYKTEG +CIIICLYVDDMLIFGSNLH+INDVKSMLS NFDM DLG
Sbjct: 59  MSKGFKVNESDECIYYKTEGRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLG 118

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EADVILGIKI RT+NGISLDQSHYI+KILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ
Sbjct: 119 EADVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEYASIIGSLRYA  C RPDI Y +GL+CRFTSR SL+H NAIERVMRYLKKTQNLGLHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NRFPTVLEGYNDADWNSL 199
           N+F TVLEGY DADWNSL
Sbjct: 239 NKFSTVLEGYIDADWNSL 256

[Close]

BLAST of Cmc11g0294701 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.2e-95
Identity = 172/198 (86.87%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 1   MLKGFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLG 60
           M KGFKVNESDKC+YYKT+G LCIIICLYVDDML F SNLHVINDVKSMLSVNFDM DLG
Sbjct: 175 MSKGFKVNESDKCMYYKTKGRLCIIICLYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLG 234

Query: 61  EADVILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 120
           EAD+ILGIKITRTKNGISLDQS+YI+KILKKYNYF+SKPACTPYDSSVKLFKNTGD+VNQ
Sbjct: 235 EADIILGIKITRTKNGISLDQSYYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQ 294

Query: 121 SEYASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY 180
           SEY SIIGSLRY   C RPDI YAVGL+CRFTSRP L+H NAIER+MRYLKKTQNLGLHY
Sbjct: 295 SEYTSIIGSLRYVADCTRPDIAYAVGLLCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHY 354

Query: 181 NRFPTVLEGYNDADWNSL 199
           N+F TVLEGYND DWNSL
Sbjct: 355 NKFSTVLEGYNDVDWNSL 372

[Close]

BLAST of Cmc11g0294701 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 8.3e-23
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 26  ICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEADVILGIKITRTKNGISLDQSHYI 85
           + LYVDD+L+ GS+  ++N +   LS  F M DLG     LGI+I    +G+ L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 86  KKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYATYCIRPDIVYAV 145
           ++IL      + KP  TP    +    +T    + S++ SI+G+L+Y T   RPDI YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAV 122

Query: 146 GLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNRFPTV-LEGYNDADW 196
            +VC+    P+L   + ++RV+RY+K T   GL+ ++   + ++ + D+DW
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDW 172

[Close]

BLAST of Cmc11g0294701 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-22
Identity = 63/196 (32.14%), Postives = 103/196 (52.55%), Query Frame = 0


Query: 4   GFKVNESDKCIYYKTEGTLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMTDLGEAD 63
           GF  + SD   + K   TL + + +YVDD++I  +N   ++++KS L   F + DLG   
Sbjct: 258 GFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 317

Query: 64  VILGIKITRTKNGISLDQSHYIKKILKKYNYFESKPACTPYDSSVKLFKNT-GDSVNQSE 123
             LG++I R+  GI++ Q  Y   +L +      KP+  P D SV    ++ GD V+   
Sbjct: 318 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 377

Query: 124 YASIIGSLRYATYCIRPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHY-N 183
           Y  +IG L Y     R DI +AV  + +F+  P L H  A+ +++ Y+K T   GL Y +
Sbjct: 378 YRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 184 RFPTVLEGYNDADWNS 198
           +    L+ ++DA + S
Sbjct: 438 QAEMQLQVFSDASFQS 452

[Close]

BLAST of Cmc11g0294701 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04
Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 138 RPDIVYAVGLVCRFTSRPSLKHLNAIERVMRYLKKTQNLGLHYNRFPTV-LEGYNDADWN 197
           RPD+ +AV  + +F+S      + A+ +V+ Y+K T   GL Y+    + L+ + D+DW 
Sbjct: 7   RPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWA 66

The following BLAST results are available for this feature:

BLAST of Cmc11g0294701 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09543.1	3.1e-104	96.46	hypothetical protein E5676_scaffold757G00240 [Cucumis melo var. makuwa]	[more]
KAA0032842.1	9.7e-98	90.36	hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK211...	[more]
KAA0060459.1	4.1e-96	88.89	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
TYK00058.1	5.3e-96	88.38	hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]	[more]
KAA0058878.1	4.5e-95	86.87	putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein...	[more]

BLAST of Cmc11g0294701 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.6e-31	40.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.0e-25	35.57	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	5.6e-24	35.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.6e-23	33.51	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	1.2e-21	35.09	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc11g0294701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCG4	1.5e-104	96.46	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7SNZ1	4.7e-98	90.36	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3D4T4	2.0e-96	88.89	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BLQ7	2.6e-96	88.38	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DJH9	2.2e-95	86.87	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]

BLAST of Cmc11g0294701 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	8.3e-23	35.09	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.9e-22	32.14	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	5.1e-04	32.79	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 4..103 e-value: 2.0E-23 score: 83.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..178
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 24..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0294701.1	Cmc11g0294701.1	mRNA