Cmc11g0294641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	40S ribosomal protein S13
Location	CMiso1.1chr11: 11424700 .. 11428192 (-)
RNA-Seq Expression	Cmc11g0294641
Synteny	Cmc11g0294641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTTTTATCTTTTCTTAACGATTTAGTTATTTGTTTTGTTAACTTTTGATAGAGATTTCCTCCCTCAGAGTCCATAATTGGCCCATGATATTATTCTTTTTACTGATGTCAAGTATGTAAATTGTAGGTTGTTTAGGTGCATTTTTTTTACTGTGTAGTCTGGGGTTGTATACTATGTAGAACTTGCACCAGACATTCTAGAGGATCTTTATCACTTTATCAAGAAAGCAGTTTCCACCCGTAAGCATTTAGAGAGGAACATGAAGGACAAAGACTCAAAGTTCTGATTGATTCTTGTGGAGAGCAGAATTTACAGGCTTGCTCGTTACTATAAGAAAACGAAGAAGCTTCCACCAGTTTGGAAATAGTAAGTTTTCTTTGTGCTCTGATAACTGACAATCATATAGCATATTTGATATGATGATGTAATCGTACAACGTAGTTCATTACTATGATTTGTCTTTGATACTTTGGGATCATTAATTTAGTTCTATGTTTCAGTGGTTCTTTTGAAGCTTGTGGTATTAAGCATGGTCCAACTTGAGTTCTTTCTTAAACAATATCATCTTTATTCATGTGTATCAAGCATCACATTGACCTTTGTGTAGAGTTTTATGTTAAAATATGCTATGGTGCATATTCATTCCATAATTCAAACCCGATAATAACAAAGAAGCATGGAAGATACATTTTGTTTGTGATCTAATGGAAAATAATGTAGAATGGCTTGATAAAAAAAATTGGGGCACCAAAATGTTGGGCAACCATCCATTGTTACTCAAAAATTTTGAAAACTCAAAACACAAAATCTCAGCTTAGAAAACCTCCAAACCTCCAAATGATTACCCAAGACATATTTAAAACCATAATTGCTACATAACCTCTTACACAAATTTGAACTTATGCATAAACCAAAAATTAAGGATTCCATATGCAAATTGCAGCAACATTATTACTCAAGCAAAAAGGATCCGGACTCTTAGAACTTACCAAAATTGACTGAACAACTATTAATCTCATCAGACATCACCCAAGAAAAACTTCATTAATTCCTCCAAAAGCTTAAATCCAACACTAAAACACAACGACCATCAACCACTTTGAGTCAAATGCTAATGAGTATTCTAAAATCTTCAAGAAAATACCCAAACATAAAAGGGTAACCAAGATTTTCGAGATAAACCATCAAGTTTACCCAAGACCTTACCAAACTCCTAAATCCCAACAAATTCAAGGCGGTGAAACCCAAAATAGGCCGGTGAAGAACCTTCAAGCAACCATAACATGACTGATGCATTAGATATGTGGCAAAACGATGACGAAATCGACGATCTGATCGGTGTAAGAAGCTGTGGACGGTGTGCAGATGACAACTGTAGACATGGTACAGAGAGAGCTCTTCGAAATTTTTCGTTGGGGTGGTTCGTTAAAGGAGATTGGAGAGAGAAGGATGAAGAGGAAAGGGAGTGGTTGGTTGTGGGAGATGAGAGAAAAGGAAAAAGTAAAAGAGAGATGGGGTTTTATTGGTGAAGGAAGATGAAAGAAAAGGAAAGGTAACATAGAAGAAAGAAAATGTTTGTAAGAATATTAAAATGAAGGCAAACTTTCATAAATATAACAAAACTGTAAACTATTTACAGCCCGTATAACAAGTCCATTAAGGCAAATTATTATTTTGGAATTTCTTGTTTGCCCTTACTCTTTTATAACAATCTTTCAAATCTGATAGTTCTTCTTCTTCCCAATTTTTTAATGATTGTTGTTTATGAGTTATTCATCTCGTCTTTGATATCTTTCATCTTGATCATTCTTTTTCCTTTTTCGTAATTTTCGATTCGCTCTCGTATCCATCATCTTCGATAATATCGTTTCTCTTCTTGTCATCTTGGATAATCAAGATCGTCTATATTGTTCTGTTAATATCGTCTTAGTGTTTTTTGTTTCAGTGGGTATTCTAAACATTTTTTTTATTTGAATTATTTAGTTGATTATAAAATTTCATTCAATATTATATATTTCAGCATCAAGATAGAATGTTTAGAATATGTAGGTATTACTGTAAGACATCCTGTATTTCATTATGAAGATCGTTGAAATTTTTTATTGTTTATATTGAACTAAGAATTTATATTTTAGTAAGAATGTCGTTTTTATTTTTTTGTTGTTTGTCAGAATTTAAAGTTTTTTTTCGTTCAGAACTTTTAAGAATCGCTGTAAGAATTATGTATTTCATTATAAAGATCGATAGTTTGAAGTTTTTCACGATAATTTTCATTGAATTACTTGATCGTTTACCTCTATCAATATCATTGTTTATCAATATAGAGACGGTTGTTTTGCTATATGGACATGATCGTTCATCTGTATGAACACGATCGTTCATCTTTATGAACACAAAAATTTTCAATATTTTGTATGATCAACATCTTTAAACGATCGTGTATCTAAGTCAATATGATGGTTTAAACGATTGTTTAGTTTATTCTATACGATGATTTAATTTATTTTATATGATCATCTATTGTTGTTAAATGATATGATAGTTTAATTTATTTTATATGATCATCTATTGTTGTTAAATGATCGTTTAGTATTTATAATTTTTTTTGCACGACCGTTTATTTATTTTTTGCATTGTGACACAAATCTTTGATAATTTTGTCAGCATCAAATTGTTTGCAAATGATCTATTCAACGATGTAAAAGATTAGTATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGGGCGGCCCCTTAAATTGTGAATTTTTATTCATTTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCCAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTCAATTCTGATCCATGCAAGTAACATCGCTTTTAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTATCACAATAATTATTGTGAAGATTGTTTAGTACATTTTAATCTTTTATTTTATGATAGATATCTATCTAATTCTTCCTTTCACCATTAAATACTTAATTATATTTTCATTTTTCCAGATAAGAATGTCTATTTCTATTGTTGTTTTTTATGGAGGTAAATGGAATGACTACAATGTTCATGAGAATTACTCAATGTCTGGAATTTTGGTAGATATGCGAGTCTAACTTTAATTCTTTGGTTGCTTTGACATGTGAACAAATTGAATTGGATGAATCAGTAGAATTTAGATGTCTGCAAAAAAGGCTGCAAATGGTATGTAACGGCATCTCATTATAAGAAGAGTGATTTGTGGATGCTACGAAAAATATACTTCTGACCATGATTGTTTATTGAGTACTACCCAAAGTTCTCAGGTCTCTTGAGTTTATGACTACAGTATCAAATTTTGAGGTCTCTTGAATTTAGATGTCTGCAAAAAAGGCTGC

mRNA sequence

ATGTTTTCTGGGGTTGTATACTATGTAGAACTTGCACCAGACATTCTAGAGGATCTTTATCACTTTATCAAGAAAGCAGTTTCCACCCGTAAGCATTTAGAGAGGAACATGAAGGACAAAGACTCAAAGTTCTGATTGATTCTTGTGGAGAGCAGAATTTACAGGCTTGCTCGTTACTATAAGAAAACGAAGAAGCTTCCACCAGTTTGGAAATAAATTTAGATGTCTGCAAAAAAGGCTGCAAATGGTATGTAACGGCATCTCATTATAAGAAGAGTGATTTGTGGATGCTACGAAAAATATACTTCTGACCATGATTGTTTATTGAGTACTACCCAAAGTTCTCAGGTCTCTTGAGTTTATGACTACAGTATCAAATTTTGAGGTCTCTTGAATTTAGATGTCTGCAAAAAAGGCTGC

Coding sequence (CDS)

ATGTTTTCTGGGGTTGTATACTATGTAGAACTTGCACCAGACATTCTAGAGGATCTTTATCACTTTATCAAGAAAGCAGTTTCCACCCGTAAGCATTTAGAGAGGAACATGAAGGACAAAGACTCAAAGTTCTGA

Protein sequence

MFSGVVYYVELAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF

Homology

[Close]

BLAST of Cmc11g0294641 vs. NCBI nr
Match: XP_008466991.1 (PREDICTED: 40S ribosomal protein S13-like, partial [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 8.7e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11 LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
          LAP+I EDLYHFIKKAVS RKHLERN KDKDSKF
Sbjct: 36 LAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKF 69

[Close]

BLAST of Cmc11g0294641 vs. NCBI nr
Match: KAA0067830.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 8.7e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYHFIKKAVS RKHLERN KDKDSKF
Sbjct: 143 LAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKF 176

[Close]

BLAST of Cmc11g0294641 vs. NCBI nr
Match: XP_008460618.1 (PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KAA0054229.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 8.7e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11 LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
          LAP+I EDLYH IKKAVS RKHLERNMKDKDSKF
Sbjct: 44 LAPEIPEDLYHLIKKAVSIRKHLERNMKDKDSKF 77

[Close]

BLAST of Cmc11g0294641 vs. NCBI nr
Match: XP_036596360.1 (40S ribosomal protein S13-like [Trichosurus vulpecula])

HSP 1 Score: 62.8 bits (151), Expect = 8.7e-07
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 5   VVYYVELAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           ++ +  LAPD+LEDLYH IKKAV+ RKHLERN KDKDSKF
Sbjct: 74  ILKFKGLAPDLLEDLYHLIKKAVAVRKHLERNRKDKDSKF 113

[Close]

BLAST of Cmc11g0294641 vs. NCBI nr
Match: KAF5092993.1 (hypothetical protein D0Z00_004299 [Geotrichum candidum])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 3   SGVVYYVELAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           +G+  ++ LAP+I EDLYH IKKAV+ RKHLE+N KDKDSKF
Sbjct: 78  NGIGIFIGLAPEIPEDLYHLIKKAVAVRKHLEKNRKDKDSKF 119

[Close]

BLAST of Cmc11g0294641 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-09
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYH IKKAVS RKHLERN KDKDSKF
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKF 113

[Close]

BLAST of Cmc11g0294641 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYH IKKAV+ RKHLERN KDKDSKF
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113

[Close]

BLAST of Cmc11g0294641 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYH IKKAV+ RKHLERN KDKDSKF
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113

[Close]

BLAST of Cmc11g0294641 vs. ExPASy Swiss-Prot
Match: Q56JX8 (40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-08
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAPD+ EDLYH IKKAV+ RKHLERN KDKD+KF
Sbjct: 80  LAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113

[Close]

BLAST of Cmc11g0294641 vs. ExPASy Swiss-Prot
Match: Q6ITC7 (40S ribosomal protein S13 OS=Gallus gallus OX=9031 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-08
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAPD+ EDLYH IKKAV+ RKHLERN KDKD+KF
Sbjct: 80  LAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113

[Close]

BLAST of Cmc11g0294641 vs. ExPASy TrEMBL
Match: A0A5A7VKU6 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00370 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYHFIKKAVS RKHLERN KDKDSKF
Sbjct: 143 LAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKF 176

[Close]

BLAST of Cmc11g0294641 vs. ExPASy TrEMBL
Match: A0A5A7UL87 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001740 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11 LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
          LAP+I EDLYH IKKAVS RKHLERNMKDKDSKF
Sbjct: 44 LAPEIPEDLYHLIKKAVSIRKHLERNMKDKDSKF 77

[Close]

BLAST of Cmc11g0294641 vs. ExPASy TrEMBL
Match: A0A1S3CSM9 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103504390 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11 LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
          LAP+I EDLYHFIKKAVS RKHLERN KDKDSKF
Sbjct: 36 LAPEIPEDLYHFIKKAVSIRKHLERNRKDKDSKF 69

[Close]

BLAST of Cmc11g0294641 vs. ExPASy TrEMBL
Match: A0A1S3CCE6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103499396 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 11 LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
          LAP+I EDLYH IKKAVS RKHLERNMKDKDSKF
Sbjct: 44 LAPEIPEDLYHLIKKAVSIRKHLERNMKDKDSKF 77

[Close]

BLAST of Cmc11g0294641 vs. ExPASy TrEMBL
Match: A0A5A7VHP7 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00600 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-07
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11 LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
          LAP+ILEDLYH IKK VS RKHLERN KDKDSKF
Sbjct: 44 LAPEILEDLYHLIKKTVSIRKHLERNRKDKDSKF 77

[Close]

BLAST of Cmc11g0294641 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 59.3 bits (142), Expect = 8.9e-10
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYH IKKAV+ RKHLERN KDKDSKF
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113

[Close]

BLAST of Cmc11g0294641 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 59.3 bits (142), Expect = 8.9e-10
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 11  LAPDILEDLYHFIKKAVSTRKHLERNMKDKDSKF 45
           LAP+I EDLYH IKKAV+ RKHLERN KDKDSKF
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113

The following BLAST results are available for this feature:

BLAST of Cmc11g0294641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466991.1	8.7e-07	88.24	PREDICTED: 40S ribosomal protein S13-like, partial [Cucumis melo]	[more]
KAA0067830.1	8.7e-07	88.24	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
XP_008460618.1	8.7e-07	88.24	PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KAA0054229.1 40S ribos...	[more]
XP_036596360.1	8.7e-07	72.50	40S ribosomal protein S13-like [Trichosurus vulpecula]	[more]
KAF5092993.1	1.1e-06	66.67	hypothetical protein D0Z00_004299 [Geotrichum candidum]	[more]

BLAST of Cmc11g0294641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	5.6e-09	85.29	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59223	1.3e-08	82.35	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	1.3e-08	82.35	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
Q56JX8	1.3e-08	79.41	40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3	[more]
Q6ITC7	1.3e-08	79.41	40S ribosomal protein S13 OS=Gallus gallus OX=9031 GN=RPS13 PE=2 SV=3	[more]

BLAST of Cmc11g0294641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKU6	4.2e-07	88.24	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UL87	4.2e-07	88.24	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CSM9	4.2e-07	88.24	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103504390 PE=3 SV=1	[more]
A0A1S3CCE6	4.2e-07	88.24	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103499396 PE=3 SV=1	[more]
A0A5A7VHP7	9.4e-07	85.29	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Cmc11g0294641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	8.9e-10	82.35	Ribosomal protein S13/S15	[more]
AT4G00100.1	8.9e-10	82.35	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.10		coord: 13..44 e-value: 3.5E-13 score: 51.6
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 14..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0294641.1	Cmc11g0294641.1	mRNA