Cmc11g0294581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L30
Location	CMiso1.1chr11: 11311875 .. 11317576 (+)
RNA-Seq Expression	Cmc11g0294581
Synteny	Cmc11g0294581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAAAATATTAAAAAACCCTAGAATCTTTCCCCTCTCTTAGCAGCAGCCGCGTCCCTCTTCGTTTCTAACCTCTCCATTCTGTTGTGTGTCCTCAGTTCTCACTGATTCACCATCCGGGAGCCATCCTCCCTTACCCGATTCACCGTCAGTCCGACACCGTCAATCCATCACAGCTACGCCACGATTCCAGCTTCAAAGTAGCCGCACCTTCCCTACATTTCCCCTTGAAATCCTCACAGTCTATCACCGGCTCACGGTCACTCAACGATTCGGAAATCTCGTTTCCCAGTTCCAGCTCCTTAAAGGTTAATTAATTTAAGTTTTTCTTTCATTGAAACTTGAAAGAATTAAACCCACCGTCCGTCTCCCTTTACGCTTTCATTACAGCTAGAGTTATGGTTAATTTAATTTAAAATTTCTACATAGAGCTCTCTAGACTATTTGGATAGATGATTTTACTGCATTCTCAATCTATGTTTATGTGACTAATGCTGCCTTTTGAATGGTATTAGAGCTCTCTTTAAGGTTTTGGCTCTTTGGTTAGATGATTTTATGACTAATGAATTTTGTATTGATTTGGATACAATTTGAGGTTGTCATTTCATTTGAGATTGTCATTGGATTTTGTCATTAAAGAATTTGAAAACAAGGAACTTTTGAAAATAAATATTTGGTTGAAATTAATGAAATTTGGTTAAAAAACTGAGATTGAATTTTCCGGCGGGGAACCTTATCCCGCCATGTTTGTCCTTACTCCAATCCGGGATGGAAATGGAATAGGGGGGCCAGGAAGGGTTCTCCACCCCACTCAGCCCTTCACCGTGAACATCTCTGTCCCTACTCACTGCCTCTGTTTCAGTCTCTCTCGATGTTTCGCTCCTCTCTCTACCAGATTGATGCTTGAGCCTCAACATCAGCATCTACCCGTCACTTTCCTTTATTTCTCTCCTTTCTCCTCCACGAACAGATAAGTTTGGATTCTTCATCATCTTGTTCTTTGCTTTGTGCCCTTCTGATCTACTGTTCTGTTTTTTTCCCTGAAATCTACTTTTCTGGGGTGTTCAGTTTTCATTTGGTATTGGGAAAAATTAATGGCTAAATTATAAAAAATGCCCCTTAACTTTGCATTTTGTGACAAAAATACTCAACTTTCAAAAGTTTATAAAATACACTAAACTTTCAAAAAAGGTAAAAAAATGCCTTTACTGATAATTTTTGTTGGAAACTCTTAAAATTTTGTTTAAAAGATACCCTTAAAAAACTACTCTCACAATTAAATATGAACTAAAACTATTAATATCTCGTTGAAAAATAACTCAAAATTAAACATGTTGTTAGTATAATGATAAATTTATTTGAAGTCAGGTTTTATGAGATTGCCAATATTTGTTTTACGGCTTCAGATATTGGAAATGTCATTGTATTGCCCTTGTTTTGAAAAAGGAATGGCCTACAGAAATGGTGATTCTGCAAGATACTTTCCTTATCAGTGGTTGCCTTTTCTGTTTCTTCTGCCTACATCTTTCTTATTTATGGAAGTTAGGGTTGGTCACTATGATTCCGCTGTGCATATTTAAAGGACACTTAGTCCTCCGGTTAGGGTTGATGATTCAGTTTGTCTAGAGAGCAACATTTGTATTATCTTGTTGTAGCCCTTTCTTCTTGTGTTAAAAGAAGGGAACATTACGTGTATTGGAGGCATATGCCATTCTCCTCACTATTATGAATTGTGATTTATCGAGAAAGGATTCTTTGAGCTTAGAGGAGCCTAGGTCATTCAAACAAAGAGGATTTTGTTCAATGAAAAGATGTAACACTGTGAGAGGGAGTCTCGCAAACTTGAGGGGAGCTCAAGTTCTTTAGAGAGGGAGTCTCTGTCTTTGGGAGAGCCTAAGACCATCTCACTAAAATGTAGATAACAAATGAAGAAATTTGGAGGTGAAAGTAGTGTCTATAGGCTAAATTTTTCAAAAAAGAAAAAAAAAAAAAAACTAAATCGTATCAAATGAGGTCAATATGATTTGTTTTTAAATTGATTCTTTTCAAACTCAAGAAAACTTCAAATAAATTTATCATTATACTAACCTTAGAGGTATTTTTAATATGGAGTTATTTTTGCACTAAGATATTAATGGTTTTAGGTAATATACTCATTGTGAGAGTAGTTTTTTTAACTTTTTTTTTTTTTTTTAGTTCAAAGGTATTTTTGAAACTTATCAAAAGTTTGAAACAAAAATTTAACAGCTTCCATTCAAAACTACGGTAAAGGTATTTTTGAACCATTTATAAAAGTTTGAGGATACTTTTGAAATTTTTGAAAGTTTAGGGGTAACTTTGACACACAATGCAAAGTTGAGGGGTATTTTTTATAATTTATGGTTTTACTGGACTAGTTGGTTTATTACTTTGAGCTCATAAGATTGATGGGTTTTTGTACCATTCGCAAGATATGTCTTTAGTTAACCCCCCACCCCTCTCTCACTTAATGGTTTTTTCTCAGACTTTCAGTCCCGTTCTTGATGTTGGGACTCCAGTTTTGTGATAAGTTTATGTGTAAAACATGACAATGTTTAGTAAAATTAAATTTGATATCTTTTAATGGGTGGCTGCAAAATGGATGTTTGCCACTCAAATGCCTTTTTTTTCGTTTTACAAGTGTTTTGGTTTTGAATACTACATTGTTCTTGAACTTGTGATATACTACTGTTGGCCAAACTACTGAAGGTCCTTAACTGAACGAAAATGAATTTGTTAAATTTGTTTCTCATTCAATTGGTGTTAGATATAAAACTAACAAAGAGTTTGATATGTGAACCCCAATTAATTGAAATTAGGAACCCTTTAGGTATGTGAAAACCTTCGATCTTAAACACTAAAACCCTTAAATCAAATGTATTTCAACACTAAGGATTGAATTAGACAAGGATTGCATTAAGAACAAGGCTTCAAGCCCTTGAGACCAAAAATAAGTTCTTCGGCCCAAGATTCGAACACTACACAACAATCCTACTAATGTTTTTGCTTCCTGTCATATGCTTTCACCTTTCTTAATGTTTCGTTTTTGGACCAAATGCTGTGTCTATGGAAAGTCTCATTTAAATTTCAGACTCTATGTTGATGAAAATGATATAGCTGAATGGTATATTGAAACGCTTTTGTTTTCAAGCATGCAGTTCTACTTGTTTACTTTTTAGAACATCGCTTTTAGAGGACTTTATTGAAAGATTGAAGATATAAAGATGAAGAGTATTGATTTGAGATGCAAATCGTGGCATGGAAGTGATTTCTACTTAAAATTATCATCTATATTCTTTCATTCCTTTGATGTGCAACTAGAGTATTTTTGGAGCTTTCAATCTACTGAAGATGATGAATGATCATTTGTTTATTTGAAATTTGGGGACAACCGGAGTTTTCCTGCCCAACAAATTTTAAGTAAACTACAGAAGTTCCTTGGTGACAGCTTGGCTTGGTTGCATACACTTTTATTTCATTCACTTCTATATTCAAAAAACAAATTCGAAGAATTTGTTCTGATGCTTAGATGAGACTGTTGATGTGTCTGCAGAGGAAATTGTTTCTTATTATTTATTTATTTTTATTTTTGTAGATTTTGCAGATTTTGCAGATCTTGGACATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACGCCTACTGTTAGAGGAATGATTCAACAGGTTGCTATATATACTTGTTCTCTACTGGGCACATGCAGACTACAGAATTTGCCTCATGGACTGAAGTTTTTATTTTTTTGGTTGATTATAGGTAAAGCGATTGGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAAGAGCACAGGGCCCTACGACCGCCTTTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGAAACATGTATTGCTGTTAGAGGTCAGGTCTACTTCTTGGGTATTGGGACAATGTTGAAAAGAATTATATTTGAGTAGTGTATTTTTCAGGAATTACTTGACAATCAATGGCTTTTATGCTCTATTCATCTTGCCAAAATTAGTTGCTAGCTAAAATAATATATTGGAATACTTGCCATTTTGACAATGAAATGTCTACCAAAATCATTTTGATGAAGCTACTTTCAGTAAGAAACTAGCTATGAAACACGGCTGTTTGCACAAATGCTATGCACGCCCTTGCACTTAAGAACATTATTTGTAATATGCTAAATGCTTTAGATCATATAAGCCTAGGGGAAATCAAAATGGCAGTGGCTTATCTGCTCATTAATGCTAAAAGCGCAAGATGGTTGTCTTGTAGATACAGGCTTTGAGATATTCAAACATACATGCAGGATTTTAAACTTGTAAAAGGGGCACCTTAAAGCAGTGACTTTACTCGAATGGGATCTGAGGATCTGTTCTATAATGTGACCTAAATTGTGCACCCTTAACATACTCTCAAGTTTCTGCTGCTTTCATGCTTATTGGTCCTTCCATTTCAAGTGCGACCATGTCATTTGAAATCTTGAGCTCCTCATTATTGTCTTTGGAGCTGACATAATGCTGGTCTTTGTACTGATGCTTTCGGGCAAGAAGAAGAAAGAAGAAAAAGTTTAGCAGGCCCAACACTGCGAGTAGCCAATAGAAGTAGCTCAAGTGCCCCTTGTTGAGATTACTTCTCAGCCAGCGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTAACAAAAAATCCCATGGAAAGAGTGCTAAGAAAAAGTCCAGTGCTCATTGATTTCATTTGTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCAACATATGCAAATGCTTCTCCAGCACCAACCAAGAAGAACTGAGGTATCAACCAGAAAGCACTTATGCGAGTACTTTGTCCCACAGCGGATGCCTTCCTCTCTTTCTCAACAGCCCCAGCAGCCACCATGCCAAAAATTGAGAAAACGAGTCCGATCCCAATTCTCTGAAGGCTTGTGAGACCTTGTACGTTGTGAGTTAGCTTCCGAGCTATTGGTATGAATAGTTTCTCATTCAAGGAAGTGACGAGCAGGATTGCGATGAATAGAAAGGCTGACATAGAACCAGGAGGAATCTCGAAACTGCCAACTCTTCTTTCCATAAATGATGCTTGCTCTACTGTGAACGTAGTCATTTGAGAGTATATCGTCCAAAAGAGGATGCCAGTGGACCAAATGGGTATGAGCTTGAACACCATTTTCACTTCTTCAATTTCAGTCACTGTTGAGACTATCCATGGATTGTTTGGATCAGTGGTAGCGTACTCGTCTATAATTGCAGCCTTGTCAAGACACCTGATATTCATATTTTCATTAGTCAATGTTCTTCCCAAATCAAAATAGATATAACCAAATGAATTAAGTTAAGTGAATGCACCAATTTATACGTGGATTGGTTGAACAAGACAACTGAATAGTAATGTTTTACGGGTTGTTTGGCCCATCAACTTCATAAGTTTAAATAATACAACTTCAATCGTAAACTCTATTGATGTTCACACATTTATTGAACCA

mRNA sequence

CTAAAAAAATATTAAAAAACCCTAGAATCTTTCCCCTCTCTTAGCAGCAGCCGCGTCCCTCTTCGTTTCTAACCTCTCCATTCTGTTGTGTGTCCTCAGTTCTCACTGATTCACCATCCGGGAGCCATCCTCCCTTACCCGATTCACCGTCAGTCCGACACCGTCAATCCATCACAGCTACGCCACGATTCCAGCTTCAAAGTAGCCGCACCTTCCCTACATTTCCCCTTGAAATCCTCACAGTCTATCACCGGCTCACGGTCACTCAACGATTCGGAAATCTCGTTTCCCAGTTCCAGCTCCTTAAAGATTTTGCAGATCTTGGACATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACGCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTGGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAAGAGCACAGGGCCCTACGACCGCCTTTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGAAACATGTATTGCTGTTAGAGGTCAGGTCTACTTCTTGGGTATTGGGACAATGTTGAAAAGAATTATATTTGAGTAGTGTATTTTTCAGGAATTACTTGACAATCAATGGCTTTTATGCTCTATTCATCTTGCCAAAATTAGTTGCTAGCTAAAATAATATATTGGAATACTTGCCATTTTGACAATGAAATGTCTACCAAAATCATTTTGATGAAGCTACTTTCAGTAAGAAACTAGCTATGAAACACGGCTGTTTGCACAAATGCTATGCACGCCCTTGCACTTAAGAACATTATTTGTAATATGCTAAATGCTTTAGATCATATAAGCCTAGGGGAAATCAAAATGGCAGTGGCTTATCTGCTCATTAATGCTAAAAGCGCAAGATGGTTGTCTTGTAGATACAGGCTTTGAGATATTCAAACATACATGCAGGATTTTAAACTTGTAAAAGGGGCACCTTAAAGCAGTGACTTTACTCGAATGGGATCTGAGGATCTGTTCTATAATGTGACCTAAATTGTGCACCCTTAACATACTCTCAAGTTTCTGCTGCTTTCATGCTTATTGGTCCTTCCATTTCAAGTGCGACCATGTCATTTGAAATCTTGAGCTCCTCATTATTGTCTTTGGAGCTGACATAATGCTGGTCTTTGTACTGATGCTTTCGGGCAAGAAGAAGAAAGAAGAAAAAGTTTAGCAGGCCCAACACTGCGAGTAGCCAATAGAAGTAGCTCAAGTGCCCCTTGTTGAGATTACTTCTCAGCCAGCGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTAACAAAAAATCCCATGGAAAGAGTGCTAAGAAAAAGTCCAGTGCTCATTGATTTCATTTGTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCAACATATGCAAATGCTTCTCCAGCACCAACCAAGAAGAACTGAGGTATCAACCAGAAAGCACTTATGCGAGTACTTTGTCCCACAGCGGATGCCTTCCTCTCTTTCTCAACAGCCCCAGCAGCCACCATGCCAAAAATTGAGAAAACGAGTCCGATCCCAATTCTCTGAAGGCTTGTGAGACCTTGTACGTTGTGAGTTAGCTTCCGAGCTATTGGTATGAATAGTTTCTCATTCAAGGAAGTGACGAGCAGGATTGCGATGAATAGAAAGGCTGACATAGAACCAGGAGGAATCTCGAAACTGCCAACTCTTCTTTCCATAAATGATGCTTGCTCTACTGTGAACGTAGTCATTTGAGAGTATATCGTCCAAAAGAGGATGCCAGTGGACCAAATGGGTATGAGCTTGAACACCATTTTCACTTCTTCAATTTCAGTCACTGTTGAGACTATCCATGGATTGTTTGGATCAGTGGTAGCGTACTCGTCTATAATTGCAGCCTTGTCAAGACACCTGATATTCATATTTTCATTAGTCAATGTTCTTCCCAAATCAAAATAGATATAACCAAATGAATTAAGTTAAGTGAATGCACCAATTTATACGTGGATTGGTTGAACAAGACAACTGAATAGTAATGTTTTACGGGTTGTTTGGCCCATCAACTTCATAAGTTTAAATAATACAACTTCAATCGTAAACTCTATTGATGTTCACACATTTATTGAACCA

Coding sequence (CDS)

ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACGCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTGGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGATGGAAGAGCACAGGGCCCTACGACCGCCTTTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA

Protein sequence

MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS

Homology

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BLAST of Cmc11g0294581 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.2e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

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BLAST of Cmc11g0294581 vs. NCBI nr
Match: XP_004151902.1 (uncharacterized protein LOC101219925 [Cucumis sativus] >KGN63218.1 hypothetical protein Csa_022304 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 4.1e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49
Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLPAPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

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BLAST of Cmc11g0294581 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

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BLAST of Cmc11g0294581 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-05
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

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BLAST of Cmc11g0294581 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Sbjct: 3  LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]

BLAST of Cmc11g0294581 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Cmc11g0294581 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE 73
          S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GMI++V  L+ VE
Sbjct: 2  SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]

BLAST of Cmc11g0294581 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           MIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Cmc11g0294581 vs. ExPASy TrEMBL
Match: A0A6J1CI25 (uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011134 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASA 108
           MIQQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP PSS SA
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPSSTSA 107

[Close]

BLAST of Cmc11g0294581 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 140.6 bits (353), Expect = 7.5e-34
Identity = 71/109 (65.14%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINH-LPAPSSASAS 109
           MI QVKR+VVVETEEMY ARK+    H+ALRPPLV++H  PA  S++ S
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSSNMS 109

The following BLAST results are available for this feature:

BLAST of Cmc11g0294581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455933.1	2.2e-51	100.00	PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 5...	[more]
XP_004151902.1	4.1e-50	98.15	uncharacterized protein LOC101219925 [Cucumis sativus] >KGN63218.1 hypothetical ...	[more]
XP_023512952.1	5.9e-49	94.44	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
XP_022944386.1	2.2e-48	92.59	uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet...	[more]
KAG7010749.1	3.8e-48	92.59	rpmD [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cmc11g0294581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	7.1e-05	48.15	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	7.1e-05	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
C3PL27	9.3e-05	42.59	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]
A4QBL5	1.2e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A8ZV75	1.2e-04	45.61	50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]

BLAST of Cmc11g0294581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C214	1.1e-51	100.00	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	1.1e-51	100.00	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LN29	2.0e-50	98.15	Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160...	[more]
A0A6J1FUA4	1.1e-48	92.59	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A6J1CI25	5.4e-48	92.52	uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Cmc11g0294581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	7.5e-34	65.14	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 19..72 e-value: 2.1E-19 score: 66.9
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 1..106
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 16..73 score: 15.221987
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 19..72 e-value: 1.93725E-17 score: 67.8314
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 20..69 e-value: 1.8E-16 score: 59.7
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 17..98 e-value: 2.3E-19 score: 70.9
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 18..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..108
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0294581.1	Cmc11g0294581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome