Cmc11g0294331 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294331
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	G-box-binding factor 1 isoform X1
Location	CMiso1.1chr11: 10923334 .. 10928177 (+)
RNA-Seq Expression	Cmc11g0294331
Synteny	Cmc11g0294331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATATTTAGGGTTTCAAACCCCAAATCACCATCTCTCCTGCCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCATTTCCTTCATCTGTCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCCTTTCCTTCATCTGCCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCTTTCCTCTTTCCTTCATCTTCTTCAGCCGAAGGAAGACCCAGCGTCGACACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCGCCCCCTCGACCCTTCATTTGTCCAGAGCTAGCAGCATTGTGATGCTTTCTACTTACATTGCTTTCTTGGTCTTTCAACTCTGGATTCATCGACAACTATTTGAAGTTAAGGTACGATGACTGCTCCTTTGAATATTTAATTTTATGTTTAATAGATCTAATGCATGTTTATTTCAGCTACGTTTGTTATAAAGTTTTGTTCGATGATTACATGATTTTTTAGAATTTAAATTCGCAATGGAATTGATTTTTTTTAAGTTATAAATCAACTAGAATAATCGATGATATAGTGAGTGATGTTGATAGGAAACAAACTTTAGTATTTGCCAACAACTATGGTTGTGAATCAAGCACTAGAATGGAAATTTGTTTCTAGGTATAACCAACCTAAGGTGTGTGGATCATTTTGATTGTTTGACAACAAATCAACCACACCGTGACAAAATTTTGATATAAAAAGGATTAAAATATCATCTTTGATATTTTATTTTATCAATAAATTATAAAAATAATCTCTATTTTTACTGTTAATCTTCTTTTTTTAAAAAAAATAACTAATCTATCTTTAATATTCTACAAAATTTGAAAATATATTCAATTTTTTAAATGTAAATTATAATTATTATATAAGTTCACGACATAAAAATTAAGTTCAAACAAAGTAAAAGTTTAATTAGAAGCAACGTTTTTTAATATTTAAAAATATAGAGATGAAAGTAGAATAAATTCAATTTGAAGTACTATAAAAATAGAATTTTAACGAAATATATAATAATTTGTAGTTTGTTTTGTTAAGATGAAATGAGTTTAACTTTAACTGAATTAACACATCTTATTTTAAGAATGGAAGGTTCTTGATTTCCATTATTCTATAATTGTTGTACTAGATAAATTGAGTGAAAATTTTGAGAAAGAAAGAAAAGTATTATTGGAAAATGAATTAGGAAGGTGAAGACGATGACGTTCCAGGAGAAGAGGAAGTGATCGGATTCTGTGTTGTCCTTGAGGAGAATGTTCCTTATGTCCTTCCCAAGGTTTTGTGTTCAATGTAGGAAAAAAATAACCTAATGTGTTTAATATTAACAGACAATTTAAAGGGATAAATGGAATAGAATATCAGGATAGTGATTTGTTTGGTAAGTTAATGTTTTCCTTCCTGGCATATTGATTAAGATGGTAGCTGATGTCTTTTAATTTTACTATCAATTTAAGGGATATAAATGCACGGAATTGAATAACCTAACGTGTTTAGACACCAAGTTTGGATTATACAATTTTTTTTAACTATCTTCTATTTTCCTTTGTGTGGCTACTAATTGTATAGAGATTTGTTGCGTAAAATGGCAGTTTAGTGTATATTTTCCTTTGTGATTTAGTATATATGTAAGGAAATTAAAATTTCACTTCTGCAGGTTATAGCTTGCAAAAATAAAGGGTGATGGTGGATCCATTGCAGCAGGTGAACAAGTTTTATTTTGGATCTATAATTAAGTGGAGCTTCCATTGATCTTGCTAATAGAAACTTTTTCACTCAACAGTAATAAAGTGAAATTTTTGCTATCTTGTTCAAGTTAAGTTTGTTTGCTATTTTATTGGATTGCAATTGGTTGGATGAATCTATTTTGATGTAGGGATAGTTACAAATAAAGTAATCAACTCAATGCAAAAGAATTTGCAATTATAACAAAATTTAGATCTAGCTAGCCCTTCTTAGAAGCTATTAGTATTAGACCATATTCGTAATAAGAGTTCTGTACTGTTCTTTGATTGAGTTCTATAATGTTCGTTGATTGAGTTCTATAATGTTCGCAAGTCCACTAGTTCTTCGATCTAGCAACATTCATTCAGCGGTAATTTTTTGTTTTGCTCGAGTGATTTTACCTATATGTTTTGGGATTGTAGTAGATTGGAAGTTGTGTTCTAATAGGTAGGTGTAGGTATTATATGTTAGATTTCCGATTTGGGATGTAAATTACATATGTAGAAATATGATCTATCACATTATTTTTTAGTATTTTTCCCAAAACTTACGATTAGGAATTTGGAAGAATTGAACCTTAAGACAGAATGATATTAATTTCTATGATTAGCAAGGATTATAGTGGTTTGATTTCAGCTTTGGTTGATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCTGAAACCTCCCTCTTCATCCTAGGTGATATAATTAACCTTCCTTCCTTTTGCCTATTTTCATTCCCAAGTTCTTGATAAATTGATATTTGTTTACTTGTTACACATAAGAAATAGCTCCAACACCTTCATATCCTGATTGATCAAGCTCAGTGCAGGTCTATCTATATGGTTTTTTGATTTCATACTAATTGTTGTTGAATTCATAAAAACCTAGAATAGTATAATTCAAACATTTAGAATAGTAACAAAGATGTCGATGAATACTACTGGCTTAAAGTTTAGCCTCTTCTGTAACTGTAGGCTTATTATAGTTCTGGTGCAACTCCACCTCCATTCTTTGCATCTACTATTGCTTCTCCAACTCCCCACCCTTACATCTCGGGACGTCAGGTAATTATAATAATCTATTGTCCCTATGAAATTTTATGGAGTTTGATATTTTCCAAAGAGGAAAAGATAATAATGTTCCTATTTTCTTAATTTTATGTTACATTTTTCAGCATCTTTTGATGTTACCTTATGGGACTCCAATACCTTATCCAACTATATATCATTGTGGTAATCACCCTTTTATATTATAGGCTAGAAGATTTTATTTATATTCAAATCAATGAATCTTTTTTTCTCCATGGTTTCATCTTAATATCATTTTCTCTTTACCTGACCATTCCTTTTTAAATACTCACAAAATCATTAGACCAAAATAGAAGGATTAAGTTAGTCCTTGATATAATTGTTCTTTTTTTTTTCTTTTGTAGACTCTAATCAATGTTGAATATGAAGGGAAATCCCTTGATGGAAAAGAAAGGGCCTAAAAAAATTCAAGGGCATGTTAGGAAATACTGCTTCAGCTGGCGGTAGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGGTGTTTTAACTTGAGACTTGGTGCAGGTTGTATTTTATTTTTAAATTAACTTCAAGTTATGCTACTTTTTGTTTTTTAAATTTTCAAATTTCTTTTTTGATATTTTTGTACATTCGTAAAGAGTATATTACAAAAAGTTGATCGAACAACTCTTGCAGGGTCTATTAATGAGCCTGATTCTTCGAGTAGGGAACCTAATTCTAAAGCTTAAGCTCATAACGACCTAGTTTAAGGTAAAAGGATTGGACATGATACATAACATAATTGAGACTTGAGATTATTCATATTATCTTTGCATTTAGTTTTAACTTTTAAGAATATTTTCTTTTGGGAGAGTATGTCTTCTCTTTACATTTACTTTTAGGATTGATGCATTTATTTCACAACAATGAGCAGTGGTTTATTAATTGATGATGATGTTAGATATTGATTCTTCTCGTTATTTAGCACACTTTGTCTGTATTATTTTTCTTCCCTTAATTTTGTTTAATTTAGTTCCAAACCTAATGATTTTGAAGGCGATTTTAGTGAGGGAATGAAAAGTGAAGTTTTACCACTTACAGTTTCATTGTTGCACTATTATGATAAAGTATATATATATTGATATTTCTCACACAACTTATCATTCTTGGCTATGTTTTCTCCCCCTTTCTCATTCCCAGTTGTTGATAACCTTGACTTTTTCCTTTTCATTTTCATGTTTTGTAGCTATTTACTTGAGGCATACTGGAAATATTTTTCATGTAACAACCAACAGGATGCCATATTTATTCACAAAGTTCATTTTTTGTTTATAGTTTGTTGCCATATTTTTCTGTCAGGTTATGGCAAGGAGGAAATACCGCTGGCCCTGGTGTGGTGTTTTTTCTTTTAAAGATTTTTTTAAAAAAATCTTTGTGATATGTGGTTTGCTTGCTTTGAACAACCTTTTTTTTTCTTAAATAAGTTGGTTTCTGTTTTTTACATTTTTGTTTTGTTTGTGATATGGGCACTTAGTTACGTAGGTTTCGGTTGCGAGGACTTGCAATTGTGTATTTGTATATTTTTTTGCTTCAGTAGAGGCAGCTTGACATTAAGTTTAAGGAATCTGCTGATGACCAGAGACAGTGATGAACAGAGATAGAGGTAATAATATTCTCTAAAGTTAATATATTGTACGATATTACCAAATTCTCTAAAGTACGTTTAGCTTTGTTTTGGTATTGTTTGTAGAATGATTGAAGTTATATCGGGTTGAAAGCTGAGCGATTGTGTAGATAGTCAGGCGATCGTTGAAGGTTGAAGATTGAAGATTTAGAAGACGTTTAGAATTTTTCTTATTTACGTCTTGTATTAGGATCTTTTTTCATGTACTGTTGTAGAATATATAAACATAATATTAAGTTTTCAGTTTGTGTATACAAATGTAAAAGATAAATATTATAGTTTCTAAAATATATTAATTTTATTGATTTTTTGGA

mRNA sequence

GATATATTTAGGGTTTCAAACCCCAAATCACCATCTCTCCTGCCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCATTTCCTTCATCTGTCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCCTTTCCTTCATCTGCCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCTTTCCTCTTTCCTTCATCTTCTTCAGCCGAAGGAAGACCCAGCGTCGACACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCGCCCCCTCGACCCTTCATTTGTCCAGAGCTAGCAGCATTGTGATGCTTTCTACTTACATTGCTTTCTTGGTCTTTCAACTCTGGATTCATCGACAACTATTTGAAGTTAAGGTTATAGCTTGCAAAAATAAAGGGTGATGGTGGATCCATTGCAGCAGGCTTATTATAGTTCTGGTGCAACTCCACCTCCATTCTTTGCATCTACTATTGCTTCTCCAACTCCCCACCCTTACATCTCGGGACGTCAGACTCTAATCAATGTTGAATATGAAGGGAAATCCCTTGATGGAAAAGAAAGGGCCTAAAAAAATTCAAGGGCATGTTAGGAAATACTGCTTCAGCTGGCGGTAGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGGTGTTTTAACTTGAGACTTGGTGCAGGGTCTATTAATGAGCCTGATTCTTCGAGTAGGGAACCTAATTCTAAAGCTTAAGCTCATAACGACCTAGTTTAAGGTTATGGCAAGGAGGAAATACCGCTGGCCCTGGTGTGGTGTTTTTTCTTTTAAAGATTTTTTTAAAAAAATCTTTGTGATATGTGGTTTGCTTGCTTTGAACAACCTTTTTTTTTCTTAAATAAGTTGGTTTCTGTTTTTTACATTTTTGTTTTGTTTGTGATATGGGCACTTAGTTACGTAGGTTTCGGTTGCGAGGACTTGCAATTGTGTATTTGTATATTTTTTTGCTTCAGTAGAGGCAGCTTGACATTAAGTTTAAGGAATCTGCTGATGACCAGAGACAGTGATGAACAGAGATAGAGAATGATTGAAGTTATATCGGGTTGAAAGCTGAGCGATTGTGTAGATAGTCAGGCGATCGTTGAAGGTTGAAGATTGAAGATTTAGAAGACGTTTAGAATTTTTCTTATTTACGTCTTGTATTAGGATCTTTTTTCATGTACTGTTGTAGAATATATAAACATAATATTAAGTTTTCAGTTTGTGTATACAAATGTAAAAGATAAATATTATAGTTTCTAAAATATATTAATTTTATTGATTTTTTGGA

Coding sequence (CDS)

ATGTTAGGAAATACTGCTTCAGCTGGCGGTAGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGGTGTTTTAACTTGAGACTTGGTGCAGGGTCTATTAATGAGCCTGATTCTTCGAGTAGGGAACCTAATTCTAAAGCTTAA

Protein sequence

MLGNTASAGGRESGKVASSSGNDGASQRCFNLRLGAGSINEPDSSSREPNSKA

Homology

[Close]

BLAST of Cmc11g0294331 vs. NCBI nr
Match: KAA0066466.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 3  GNTASAGGRESGKVASSSGNDGASQRCFNLRLGAGSINEPDSSSREPNSKA 54
          GNTASAGGR+SGKVASSSGNDGASQRCFNLRLGAG +NEP SSSREPN+KA
Sbjct: 48 GNTASAGGRKSGKVASSSGNDGASQRCFNLRLGAGPVNEPGSSSREPNAKA 98

[Close]

BLAST of Cmc11g0294331 vs. NCBI nr
Match: TYJ99642.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MLGNTASAGGRESGKVASSSGNDGASQRCFNLRLGAG-SINEPDSSSREPNSKA 54
           MLGNTASAGGR+SGKVASSSGNDGA QRCFNLRLGAG  +NEP SSSREPN+KA
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRLGAGWPVNEPGSSSREPNAKA 144

[Close]

BLAST of Cmc11g0294331 vs. NCBI nr
Match: KAA0054817.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MLGNTASAGGRESGKVASSSGNDGASQRCFNLRLGAG-SINEPDSSSREPNSKA 54
           MLGNTASAGGR+SGKVASSSGNDGA QRCFNLRLGAG  +NEP SSSREPN+KA
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRLGAGWPVNEPGSSSREPNAKA 144

[Close]

BLAST of Cmc11g0294331 vs. NCBI nr
Match: TYJ98377.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 3  GNTASAGGRESGKVASSSGNDGASQRCFNLRLGAGSINEPDSSSREPNSKA 54
          GNTASAGG++SGKVASS GNDGASQRCFNLRLGAG +NEP SSSREPN+KA
Sbjct: 48 GNTASAGGKKSGKVASSYGNDGASQRCFNLRLGAGPVNEPSSSSREPNAKA 98

[Close]

BLAST of Cmc11g0294331 vs. ExPASy TrEMBL
Match: A0A5A7VJF0 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005670 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 3  GNTASAGGRESGKVASSSGNDGASQRCFNLRLGAGSINEPDSSSREPNSKA 54
          GNTASAGGR+SGKVASSSGNDGASQRCFNLRLGAG +NEP SSSREPN+KA
Sbjct: 48 GNTASAGGRKSGKVASSSGNDGASQRCFNLRLGAGPVNEPGSSSREPNAKA 98

[Close]

BLAST of Cmc11g0294331 vs. ExPASy TrEMBL
Match: A0A5A7UJP1 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G001090 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.5e-14
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MLGNTASAGGRESGKVASSSGNDGASQRCFNLRLGAG-SINEPDSSSREPNSKA 54
           MLGNTASAGGR+SGKVASSSGNDGA QRCFNLRLGAG  +NEP SSSREPN+KA
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRLGAGWPVNEPGSSSREPNAKA 144

[Close]

BLAST of Cmc11g0294331 vs. ExPASy TrEMBL
Match: A0A5D3BIS2 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00150 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.5e-14
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MLGNTASAGGRESGKVASSSGNDGASQRCFNLRLGAG-SINEPDSSSREPNSKA 54
           MLGNTASAGGR+SGKVASSSGNDGA QRCFNLRLGAG  +NEP SSSREPN+KA
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRLGAGWPVNEPGSSSREPNAKA 144

[Close]

BLAST of Cmc11g0294331 vs. ExPASy TrEMBL
Match: A0A5D3BGX8 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001160 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 3  GNTASAGGRESGKVASSSGNDGASQRCFNLRLGAGSINEPDSSSREPNSKA 54
          GNTASAGG++SGKVASS GNDGASQRCFNLRLGAG +NEP SSSREPN+KA
Sbjct: 48 GNTASAGGKKSGKVASSYGNDGASQRCFNLRLGAGPVNEPSSSSREPNAKA 98

The following BLAST results are available for this feature:

BLAST of Cmc11g0294331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066466.1	3.0e-14	90.20	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ99642.1	2.0e-13	87.04	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0054817.1	2.0e-13	87.04	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ98377.1	2.6e-13	86.27	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0294331 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0294331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJF0	1.5e-14	90.20	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UJP1	9.5e-14	87.04	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BIS2	9.5e-14	87.04	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BGX8	1.2e-13	86.27	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc11g0294331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0294331.1	Cmc11g0294331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding