Cmc11g0293671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0293671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 9996718 .. 9997401 (-)
RNA-Seq Expression	Cmc11g0293671
Synteny	Cmc11g0293671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACGGCCTTTCTAAATAAAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCCAGGCAGTGGTATCTTAAGTTTAATGATACCATCGCATCTTTTGGTTTTAAAGAAAACATTGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTATTCTATATGTCAATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTTTAAAAACTTTGAAATGAAAGATATGGGTGAGGCATCCTATGTGATTGGAATTGAAATATTCTGTGACCGAACACATGGATTGTTAGGATTGTCTCAAAAAGCCTATATTAATAAAGTTTTAGAGAAATTTAAGATGGACAATTGCTCTTCAAGTGTAGTTCCAATTCAGAAGGGAGATAAATTTAGTTTTATGCAATGTCCAAAAATTGAATTGGAACGAAATCATATGGAAACTATTCCTTATGCATCTATTGTTGGAACTTATTGTATGTACAGACTTGCACTAGACCAGACTTCAGTTTTGCTGTGGGTATGCTAG

mRNA sequence

ATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACGGCCTTTCTAAATAAAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCCAGGCAGTGGTATCTTAAGTTTAATGATACCATCGCATCTTTTGGTTTTAAAGAAAACATTGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTATTCTATATGTCAATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTTTAAAAACTTTGAAATGAAAGATATGGGTGAGGCATCCTATGTGATTGGAATTGAAATATTCTGTGACCGAACACATGGATTGTTAGGATTGTCTCAAAAAGCCTATATTAATAAAGTTTTAGAGAAATTTAAGATGGACAATTGCTCTTCAAGTGTAGTTCCAATTCAGAAGGGAGATAAATTTAGTTTTATGCAATGTCCAAAAATTGAATTGGAACGAAATCATATGGAAACTATTCCTTATGCATCTATTGTTGGAACTTATTGTATGTACAGACTTGCACTAGACCAGACTTCAGTTTTGCTGTGGGTATGCTAG

Coding sequence (CDS)

ATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACGGCCTTTCTAAATAAAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCCAGGCAGTGGTATCTTAAGTTTAATGATACCATCGCATCTTTTGGTTTTAAAGAAAACATTGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTATTCTATATGTCAATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTTTAAAAACTTTGAAATGAAAGATATGGGTGAGGCATCCTATGTGATTGGAATTGAAATATTCTGTGACCGAACACATGGATTGTTAGGATTGTCTCAAAAAGCCTATATTAATAAAGTTTTAGAGAAATTTAAGATGGACAATTGCTCTTCAAGTGTAGTTCCAATTCAGAAGGGAGATAAATTTAGTTTTATGCAATGTCCAAAAATTGAATTGGAACGAAATCATATGGAAACTATTCCTTATGCATCTATTGTTGGAACTTATTGTATGTACAGACTTGCACTAGACCAGACTTCAGTTTTGCTGTGGGTATGCTAG

Protein sequence

MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEFLFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKGDKFSFMQCPKIELERNHMETIPYASIVGTYCMYRLALDQTSVLLWVC

Homology

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BLAST of Cmc11g0293671 vs. NCBI nr
Match: KAA0052755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 390.6 bits (1002), Expect = 9.4e-105
Identity = 194/209 (92.82%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDTI SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDM EASYVIGIEIF DRTHGLLGLSQ AYINKVLEKFKM+ CSSSVVPIQKG
Sbjct: 739 LSKNFEMKDMSEASYVIGIEIFRDRTHGLLGLSQNAYINKVLEKFKMNKCSSSVVPIQKG 798

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS MQCPK ELERN METI YASIVG+
Sbjct: 799 DKFSLMQCPKNELERNQMETISYASIVGS 827

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BLAST of Cmc11g0293671 vs. NCBI nr
Match: TYK04201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 390.6 bits (1002), Expect = 9.4e-105
Identity = 194/209 (92.82%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDTI SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDM EASYVIGIEIF DRTHGLLGLSQ AYINKVLEKFKM+ CSSSVVPIQKG
Sbjct: 739 LSKNFEMKDMSEASYVIGIEIFRDRTHGLLGLSQNAYINKVLEKFKMNKCSSSVVPIQKG 798

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS MQCPK ELERN METI YASIVG+
Sbjct: 799 DKFSLMQCPKNELERNQMETISYASIVGS 827

[Close]

BLAST of Cmc11g0293671 vs. NCBI nr
Match: TYK00088.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 390.2 bits (1001), Expect = 1.2e-104
Identity = 192/209 (91.87%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAF+N NLDE++FMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 72  MALVAHYDLELHQMDVKTAFINGNLDEKLFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 131

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDTI SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATNDFGLLCQTKEF
Sbjct: 132 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 191

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDMGEASYVIGIEIF DRTHGLL LSQKAYINKVL+KFKMD CSSSVVPI KG
Sbjct: 192 LSKNFEMKDMGEASYVIGIEIFRDRTHGLLRLSQKAYINKVLDKFKMDKCSSSVVPIHKG 251

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS MQCPK ELERN METIPYASIVG+
Sbjct: 252 DKFSLMQCPKNELERNQMETIPYASIVGS 280

[Close]

BLAST of Cmc11g0293671 vs. NCBI nr
Match: KAA0033349.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 384.8 bits (987), Expect = 5.1e-103
Identity = 192/209 (91.87%), Postives = 197/209 (94.26%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 41  MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 100

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQ YLKFNDTI SFGFKENIVDRCIYLKISGSKFI+L+LYV+DILLAT DFGLLCQTKEF
Sbjct: 101 RQCYLKFNDTITSFGFKENIVDRCIYLKISGSKFIVLVLYVDDILLATIDFGLLCQTKEF 160

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDMGEASYVI IEIF DR HGLLGLSQKAYINKVLEKFKMD CSSSVVPIQKG
Sbjct: 161 LSKNFEMKDMGEASYVIKIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKG 220

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKF+ MQCPK ELERN METIPYASIVG+
Sbjct: 221 DKFNLMQCPKNELERNQMETIPYASIVGS 249

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BLAST of Cmc11g0293671 vs. NCBI nr
Match: RYE20331.1 (hypothetical protein EOP45_11235, partial [Sphingobacteriaceae bacterium])

HSP 1 Score: 366.3 bits (939), Expect = 1.9e-97
Identity = 180/209 (86.12%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MA+VAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGF+V+GKEHMVCKLK+SIYGLKQAS
Sbjct: 61  MAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQAS 120

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDT+ SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATND GLL QTKEF
Sbjct: 121 RQWYLKFNDTVTSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDLGLLRQTKEF 180

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDMGEASYVIGIEI  DR+ G LGLSQKAYINKVLE+FKMD CS+ +VPIQKG
Sbjct: 181 LSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKG 240

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS  QCPK ELER  ME IPYASIVG+
Sbjct: 241 DKFSLNQCPKNELERKQMEQIPYASIVGS 269

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BLAST of Cmc11g0293671 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.2e-50
Identity = 101/223 (45.29%), Postives = 147/223 (65.92%), Query Frame = 0


Query: 1    MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
            ++L A  DLE+ Q+DVKTAFL+ +L+EE++M+QPEGF V GK+HMVCKL +S+YGLKQA 
Sbjct: 908  LSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAP 967

Query: 61   RQWYLKFNDTIASFGFKENIVDRCIYLK-ISGSKFIILILYVNDILLATNDFGLLCQTKE 120
            RQWY+KF+  + S  + +   D C+Y K  S + FIIL+LYV+D+L+   D GL+ + K 
Sbjct: 968  RQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKG 1027

Query: 121  FLFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQK 180
             L K+F+MKD+G A  ++G++I  +RT   L LSQ+ YI +VLE+F M N      P+  
Sbjct: 1028 DLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAG 1087

Query: 181  GDKFSFMQCPKIELERNHMETIPYASIVGTYCMYRLALDQTSV 223
              K S   CP    E+ +M  +PY+S VG+  MY +   +  +
Sbjct: 1088 HLKLSKKMCPTTVEEKGNMAKVPYSSAVGS-LMYAMVCTRPDI 1129

[Close]

BLAST of Cmc11g0293671 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-33
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 1    MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
            ++LV  Y+L++HQMDVKTAFLN  L EE++M  P+G  +      VCKL ++IYGLKQA+
Sbjct: 988  LSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAA 1047

Query: 61   RQWYLKFNDTIASFGFKENIVDRCIYLKISG--SKFIILILYVNDILLATNDFGLLCQTK 120
            R W+  F   +    F  + VDRCIY+   G  ++ I ++LYV+D+++AT D   +   K
Sbjct: 1048 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1107

Query: 121  EFLFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPI 178
             +L + F M D+ E  + IGI I  +     + LSQ AY+ K+L KF M+NC++   P+
Sbjct: 1108 RYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL 1162

[Close]

BLAST of Cmc11g0293671 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.0e-26
Identity = 66/199 (33.17%), Postives = 106/199 (53.27%), Query Frame = 0


Query: 11   LHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDT 70
            + Q+DV  AFL   L ++V+M QP GF+ + + + VCKL++++YGLKQA R WY++  + 
Sbjct: 1061 IRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY 1120

Query: 71   IASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEFLFKNFEMKDM 130
            + + GF  ++ D  +++   G   + +++YV+DIL+  ND  LL  T + L + F +KD 
Sbjct: 1121 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDH 1180

Query: 131  GEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKGDKFSFMQCPK 190
             E  Y +GIE    R    L LSQ+ YI  +L +  M        P+    K S     K
Sbjct: 1181 EELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTK 1240

Query: 191  IELERNHMETIPYASIVGT 210
            +       +   Y  IVG+
Sbjct: 1241 L------TDPTEYRGIVGS 1251

[Close]

BLAST of Cmc11g0293671 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.5e-24
Identity = 65/199 (32.66%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 11   LHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDT 70
            + Q+DV  AFL   L +EV+M QP GF+ + +   VC+L+++IYGLKQA R WY++    
Sbjct: 1044 IRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTY 1103

Query: 71   IASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEFLFKNFEMKDM 130
            + + GF  +I D  +++   G   I +++YV+DIL+  ND  LL  T + L + F +K+ 
Sbjct: 1104 LLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEH 1163

Query: 131  GEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKGDKFSFMQCPK 190
             +  Y +GIE    R    L LSQ+ Y   +L +  M        P+    K +     K
Sbjct: 1164 EDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTK 1223

Query: 191  IELERNHMETIPYASIVGT 210
            +       +   Y  IVG+
Sbjct: 1224 LP------DPTEYRGIVGS 1234

[Close]

BLAST of Cmc11g0293671 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-19
Identity = 61/196 (31.12%), Postives = 100/196 (51.02%), Query Frame = 0


Query: 14  MDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDTIAS 73
           MDV TAFLN  +DE +++ QP GF+ E     V +L   +YGLKQA   W    N+T+  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 74  FGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEFLFKNFEMKDMGEA 133
            GF  +  +  +Y + +    I + +YV+D+L+A     +  + K+ L K + MKD+G+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 134 SYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKGDKFSFMQCPKIEL 193
              +G+ I    ++G + LS + YI K   + +++    +  P+           P  E 
Sbjct: 121 DKFLGLNIH-QSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSK-------PLFET 180

Query: 194 ERNHMETI-PYASIVG 209
              H++ I PY SIVG
Sbjct: 181 TSPHLKDITPYQSIVG 188

[Close]

BLAST of Cmc11g0293671 vs. ExPASy TrEMBL
Match: A0A5A7UG95 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00040 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.5e-105
Identity = 194/209 (92.82%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDTI SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDM EASYVIGIEIF DRTHGLLGLSQ AYINKVLEKFKM+ CSSSVVPIQKG
Sbjct: 739 LSKNFEMKDMSEASYVIGIEIFRDRTHGLLGLSQNAYINKVLEKFKMNKCSSSVVPIQKG 798

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS MQCPK ELERN METI YASIVG+
Sbjct: 799 DKFSLMQCPKNELERNQMETISYASIVGS 827

[Close]

BLAST of Cmc11g0293671 vs. ExPASy TrEMBL
Match: A0A5D3BWW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00300 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.5e-105
Identity = 194/209 (92.82%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDTI SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDM EASYVIGIEIF DRTHGLLGLSQ AYINKVLEKFKM+ CSSSVVPIQKG
Sbjct: 739 LSKNFEMKDMSEASYVIGIEIFRDRTHGLLGLSQNAYINKVLEKFKMNKCSSSVVPIQKG 798

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS MQCPK ELERN METI YASIVG+
Sbjct: 799 DKFSLMQCPKNELERNQMETISYASIVGS 827

[Close]

BLAST of Cmc11g0293671 vs. ExPASy TrEMBL
Match: A0A5D3BLU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00400 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.9e-105
Identity = 192/209 (91.87%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAF+N NLDE++FMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 72  MALVAHYDLELHQMDVKTAFINGNLDEKLFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 131

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDTI SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATNDFGLLCQTKEF
Sbjct: 132 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 191

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDMGEASYVIGIEIF DRTHGLL LSQKAYINKVL+KFKMD CSSSVVPI KG
Sbjct: 192 LSKNFEMKDMGEASYVIGIEIFRDRTHGLLRLSQKAYINKVLDKFKMDKCSSSVVPIHKG 251

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS MQCPK ELERN METIPYASIVG+
Sbjct: 252 DKFSLMQCPKNELERNQMETIPYASIVGS 280

[Close]

BLAST of Cmc11g0293671 vs. ExPASy TrEMBL
Match: A0A5A7SVZ5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001720 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.5e-103
Identity = 192/209 (91.87%), Postives = 197/209 (94.26%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS
Sbjct: 41  MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 100

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQ YLKFNDTI SFGFKENIVDRCIYLKISGSKFI+L+LYV+DILLAT DFGLLCQTKEF
Sbjct: 101 RQCYLKFNDTITSFGFKENIVDRCIYLKISGSKFIVLVLYVDDILLATIDFGLLCQTKEF 160

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDMGEASYVI IEIF DR HGLLGLSQKAYINKVLEKFKMD CSSSVVPIQKG
Sbjct: 161 LSKNFEMKDMGEASYVIKIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKG 220

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKF+ MQCPK ELERN METIPYASIVG+
Sbjct: 221 DKFNLMQCPKNELERNQMETIPYASIVGS 249

[Close]

BLAST of Cmc11g0293671 vs. ExPASy TrEMBL
Match: A0A4V1T029 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_11235 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 9.2e-98
Identity = 180/209 (86.12%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 60
           MA+VAHYDLELHQMDVKTAFLN NLDEEVFMDQPEGF+V+GKEHMVCKLK+SIYGLKQAS
Sbjct: 61  MAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQAS 120

Query: 61  RQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQTKEF 120
           RQWYLKFNDT+ SFGFKENIVDRCIYLKISGSKFIIL+LYV+DILLATND GLL QTKEF
Sbjct: 121 RQWYLKFNDTVTSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDLGLLRQTKEF 180

Query: 121 LFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVPIQKG 180
           L KNFEMKDMGEASYVIGIEI  DR+ G LGLSQKAYINKVLE+FKMD CS+ +VPIQKG
Sbjct: 181 LSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKG 240

Query: 181 DKFSFMQCPKIELERNHMETIPYASIVGT 210
           DKFS  QCPK ELER  ME IPYASIVG+
Sbjct: 241 DKFSLNQCPKNELERKQMEQIPYASIVGS 269

[Close]

BLAST of Cmc11g0293671 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-32
Identity = 70/188 (37.23%), Postives = 116/188 (61.70%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDVKTAFLNKNLDEEVFMDQPEGFMVEGKEHM----VCKLKRSIYGL 60
           +A+ A Y+  LHQ+D+  AFLN +LDEE++M  P G+     + +    VC LK+SIYGL
Sbjct: 180 LAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

Query: 61  KQASRQWYLKFNDTIASFGFKENIVDRCIYLKISGSKFIILILYVNDILLATNDFGLLCQ 120
           KQASRQW+LKF+ T+  FGF ++  D   +LKI+ + F+ +++YV+DI++ +N+   + +
Sbjct: 240 KQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDE 299

Query: 121 TKEFLFKNFEMKDMGEASYVIGIEIFCDRTHGLLGLSQKAYINKVLEKFKMDNCSSSVVP 180
            K  L   F+++D+G   Y +G+EI   R+   + + Q+ Y   +L++  +  C  S VP
Sbjct: 300 LKSQLKSCFKLRDLGPLKYFLGLEI--ARSAAGINICQRKYALDLLDETGLLGCKPSSVP 359

Query: 181 IQKGDKFS 185
           +     FS
Sbjct: 360 MDPSVTFS 365

[Close]

BLAST of Cmc11g0293671 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-05
Identity = 36/113 (31.86%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 97  LILYVNDILLATNDFGLLCQTKEFLFKNFEMKDMGEASYVIGIEIFCDRTH-GLLGLSQK 156
           L+LYV+DILL  +   LL      L   F MKD+G   Y +GI+I   +TH   L LSQ 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI---KTHPSGLFLSQT 62

Query: 157 AYINKVLEKFKMDNCS--SSVVPIQKGDKFSFMQCPKIELERNHMETIPYASI 207
            Y  ++L    M +C   S+ +P++     S  + P     R+ +  + Y ++
Sbjct: 63  KYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTL 112

The following BLAST results are available for this feature:

BLAST of Cmc11g0293671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052755.1	9.4e-105	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04201.1	9.4e-105	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00088.1	1.2e-104	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0033349.1	5.1e-103	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
RYE20331.1	1.9e-97	86.12	hypothetical protein EOP45_11235, partial [Sphingobacteriaceae bacterium]	[more]

BLAST of Cmc11g0293671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.2e-50	45.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.5e-33	41.34	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	9.0e-26	33.17	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	6.5e-24	32.66	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	3.7e-19	31.12	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc11g0293671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG95	4.5e-105	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BWW5	4.5e-105	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BLU0	5.9e-105	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SVZ5	2.5e-103	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A4V1T029	9.2e-98	86.12	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Sph...	[more]

BLAST of Cmc11g0293671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.0e-32	37.23	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.8e-05	31.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..177 e-value: 1.7E-48 score: 165.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..177
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0293671.1	Cmc11g0293671.1	mRNA