Cmc11g0293321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0293321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 9530052 .. 9530588 (+)
RNA-Seq Expression	Cmc11g0293321
Synteny	Cmc11g0293321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAAGGGATAGCTAAATATGTTGATAGATGTTTGATTTATCAACAGGTTAAACCAGTGAGACAGAGTCTAGGAGGACTTCTTAATCCTTTGCCAGTGCAAGAGTGGAAATCGGAGTATATTGCTATGGATTTTCTGTTTGGATTACCTCATACATCCAGTGGACATAATGGAATATGGGTGATAGTAGACAGACTCACCAAGACAGCACGACTTTTACCGAATAGACCGACATCTACGTTAGACCAACTAGCTAGGTTATATATCGATAAGATCGTAAGTCAATATGGAGTGTCAGTGTCCACAATTTCAAATAGGGATCTAAGGTTTACTTCTAAATTTTGGCCTAGTTTGCAGAAAGCAATGAGAATAGGGCTAAAGTTTAGTATATTATTTCATCCCCAGACAGATGGTCAGTCTGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGAATGTGTCCTTCAGTTTAAGAGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTGTAATAACAGCTATTAG

mRNA sequence

ATGAAGCAAGGGATAGCTAAATATGTTGATAGATGTTTGATTTATCAACAGGTTAAACCAGTGAGACAGAGTCTAGGAGGACTTCTTAATCCTTTGCCAGTGCAAGAGTGGAAATCGGAGTATATTGCTATGGATTTTCTGTTTGGATTACCTCATACATCCAGTGGACATAATGGAATATGGGTGATAGTAGACAGACTCACCAAGACAGCACGACTTTTACCGAATAGACCGACATCTACGTTAGACCAACTAGCTAGGTTATATATCGATAAGATCGTAAGTCAATATGGAGTGTCAGTGTCCACAATTTCAAATAGGGATCTAAGGTTTACTTCTAAATTTTGGCCTAGTTTGCAGAAAGCAATGAGAATAGGGCTAAAGTTTAGTATATTATTTCATCCCCAGACAGATGGTCAGTCTGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGAATGTGTCCTTCAGTTTAAGAGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTGTAATAACAGCTATTAG

Coding sequence (CDS)

ATGAAGCAAGGGATAGCTAAATATGTTGATAGATGTTTGATTTATCAACAGGTTAAACCAGTGAGACAGAGTCTAGGAGGACTTCTTAATCCTTTGCCAGTGCAAGAGTGGAAATCGGAGTATATTGCTATGGATTTTCTGTTTGGATTACCTCATACATCCAGTGGACATAATGGAATATGGGTGATAGTAGACAGACTCACCAAGACAGCACGACTTTTACCGAATAGACCGACATCTACGTTAGACCAACTAGCTAGGTTATATATCGATAAGATCGTAAGTCAATATGGAGTGTCAGTGTCCACAATTTCAAATAGGGATCTAAGGTTTACTTCTAAATTTTGGCCTAGTTTGCAGAAAGCAATGAGAATAGGGCTAAAGTTTAGTATATTATTTCATCCCCAGACAGATGGTCAGTCTGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGAATGTGTCCTTCAGTTTAAGAGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTGTAATAACAGCTATTAG

Protein sequence

MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGIWVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQKAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY

Homology

[Close]

BLAST of Cmc11g0293321 vs. NCBI nr
Match: TYK05214.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
           MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 625 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 684

Query: 61  WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
           WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 685 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 744

Query: 121 KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
           KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 745 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 802

[Close]

BLAST of Cmc11g0293321 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
           MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 230 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 289

Query: 61  WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
           WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 290 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 349

Query: 121 KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
           KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 350 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 407

[Close]

BLAST of Cmc11g0293321 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
           MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 752 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 811

Query: 61  WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
           WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 812 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 871

Query: 121 KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
           KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 872 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 929

[Close]

BLAST of Cmc11g0293321 vs. NCBI nr
Match: KAA0059912.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
           MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 420 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 479

Query: 61  WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
           WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 480 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 539

Query: 121 KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
           KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 540 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 597

[Close]

BLAST of Cmc11g0293321 vs. NCBI nr
Match: KAA0061889.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 932  MKQKIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 991

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 992  WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 1051

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
            KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 1052 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 1109

[Close]

BLAST of Cmc11g0293321 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 8.9e-29
Identity = 72/177 (40.68%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            ++  I +Y+  C+  Q +K  R  L GLL PLP+ E +   I+MDF+ GLP TS+  N I
Sbjct: 1157 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1216

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
             V+VDR +K A  +  R T    QL  L    I S +G   +  S+RD+R T+  +  L 
Sbjct: 1217 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELT 1276

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNS 178
            K + I    S   HPQTDGQSERTIQTL  +LR  V    ++W  +LP +EF  N++
Sbjct: 1277 KRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNST 1333

[Close]

BLAST of Cmc11g0293321 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-28
Identity = 71/177 (40.11%), Postives = 99/177 (55.93%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            ++  I +Y+  C+  Q +K  R  L GLL PLP+ E +   I+MDF+ GLP TS+  N I
Sbjct: 1131 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1190

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
             V+VDR +K A  +  R T    QL  L    I S +G   +  S+RD+R T+  +  L 
Sbjct: 1191 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELT 1250

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNS 178
            K + I    S   HPQTDGQSERTIQTL  +LR       ++W  +LP +EF  N++
Sbjct: 1251 KRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNST 1307

[Close]

BLAST of Cmc11g0293321 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.2e-26
Identity = 62/177 (35.03%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            +++ I +YV  C   Q  K       G L P+P  E   E ++MDF+  LP  SSG+N +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE-SSGYNAL 1005

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            +V+VDR +K A L+P   + T +Q AR++  ++++ +G     I++ D  FTS+ W    
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNS 178
                  +KFS+ + PQTDGQ+ERT QT+E +LR        +W  H+ L++ + NN+
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNA 1121

[Close]

BLAST of Cmc11g0293321 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.2e-26
Identity = 62/177 (35.03%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            +++ I +YV  C   Q  K       G L P+P  E   E ++MDF+  LP  SSG+N +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE-SSGYNAL 1005

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            +V+VDR +K A L+P   + T +Q AR++  ++++ +G     I++ D  FTS+ W    
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNS 178
                  +KFS+ + PQTDGQ+ERT QT+E +LR        +W  H+ L++ + NN+
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNA 1121

[Close]

BLAST of Cmc11g0293321 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.2e-26
Identity = 62/177 (35.03%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            +++ I +YV  C   Q  K       G L P+P  E   E ++MDF+  LP  SSG+N +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE-SSGYNAL 1005

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            +V+VDR +K A L+P   + T +Q AR++  ++++ +G     I++ D  FTS+ W    
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNS 178
                  +KFS+ + PQTDGQ+ERT QT+E +LR        +W  H+ L++ + NN+
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNA 1121

[Close]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 1160 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 1219

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 1220 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 1279

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
            KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 1280 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 1337

[Close]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 1198 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 1257

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 1258 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 1317

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
            KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 1318 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 1375

[Close]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 1198 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 1257

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 1258 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 1317

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
            KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 1318 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 1375

[Close]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 1198 MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 1257

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 1258 WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 1317

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
            KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 1318 KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 1375

[Close]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL
Match: A0A5A7UUL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00090 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 145/178 (81.46%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1    MKQGIAKYVDRCLIYQQVKPVRQSLGGLLNPLPVQEWKSEYIAMDFLFGLPHTSSGHNGI 60
            MKQ IA+YVDRCLI QQVKPVRQ  GG LNPLPV EWK E+I MDFLFGLP TSSGH+GI
Sbjct: 830  MKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGI 889

Query: 61   WVIVDRLTKTARLLPNRPTSTLDQLARLYIDKIVSQYGVSVSTISNRDLRFTSKFWPSLQ 120
            WVIVDRLTKT R +P + TSTLDQLARLY+DKIVSQYGV VS +S+RD RFTSKFWPSLQ
Sbjct: 890  WVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQ 949

Query: 121  KAMRIGLKFSILFHPQTDGQSERTIQTLEDMLRECVLQFKRSWDTHLPLMEFACNNSY 179
            KAM  GLKFS  FHPQTDGQSERTIQTLEDMLR CVLQ K SWDTHLPLMEFA NN+Y
Sbjct: 950  KAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNY 1007

The following BLAST results are available for this feature:

BLAST of Cmc11g0293321 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05214.1	2.2e-77	81.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053246.1	2.2e-77	81.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050493.1	2.2e-77	81.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059912.1	2.2e-77	81.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0061889.1	2.2e-77	81.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0293321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	8.9e-29	40.68	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	2.6e-28	40.11	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	9.2e-26	35.03	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.2e-26	35.03	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.2e-26	35.03	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2V7	1.1e-77	81.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	1.1e-77	81.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	1.1e-77	81.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	1.1e-77	81.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7UUL6	1.1e-77	81.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc11g0293321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 31..178 e-value: 6.9E-27 score: 96.0
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 6..177
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 29..178 score: 12.75701
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 30..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0293321.1	Cmc11g0293321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding