Cmc11g0293301 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0293301
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr11: 9466515 .. 9467751 (+)
RNA-Seq ExpressionCmc11g0293301
SyntenyCmc11g0293301
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGAGCAGAATTGTAATTTGTTTAAGATATTTTAAAATGGAAAGGGCTGGTGAAAGGCTTTTTATCCATTGGAATCATGTAGAGTAAAAGCATCAGAGCAAAAAAATTGTAGGATCCCATCAAGATGTACATGGAAAATGAAACATTTTCAGAGAGCCAAAAGCATTATGGCAACAAAGGTGAAGCCAACAGAGAGATGAATCCTGGAACTGCATCTGTAAGCCAATGATGGAGGAGGCGGAGGTTTGGGGGATGCTGAAGGAATCAGTGGCTGATCAAATGGAAACAGAGGGATCTGAGGGTCCGGTGTCGGTGCTGATGATGGTGGAGTTGGTTCCGTGGGTGGTGCTGGAGGGCTGGGTTTAGAATCTGGTGGTGAAGCCTGAGGAGACTTTGCTGGTGGCTTTGTTGCAGCTTTTGGGGCGGAAGATGGAGGAGGAGATGTAGGAGCAGAGGGAGTGGAAGTAGGTGGCGGTGAAGACGGTGTTACTTCCGGCGGTGGAGATGGAGGCGTAGCTATGGAGGAAGGTGGCGGTGATGGATTTGCAAGGGTGTCAATTTCAACCTTCATTCCAGCAAGGCAATGGCCAGGCACCCCACAAATGAAGAATCTTTTACCTGATGTCAAAAGGGTAATCGCTGTACTGCCGCCAGTGTGCTTCTCTATGGGGTTGCTTGCGGAACAGGAGCTGAAATCTGGCTCATTGACTTCAAGCACATCATGGTTCGACGAATACTCGAAAACTGTCGAGGACTAAAATCAGTTATAGTTCCACGAGAAACAAAAATTGAGCTGAGAATGATATATTACGTATGGAGAAAAGATTAGAAGGGTTTAGAAGAAATAATAGAAAGGAGTAGTAACTGAGAACATCTCCAATGGTGAAGCTTTTGGAGGAAGCCCAAGACTGGAAGTTGGGGCCTATTTCCCAGCCACCAGAATCACCCACTGTATAGTTAATTGCCATCGCTAATTCAACAGCCATTGTGGCTGCAATTGCCAATGCCATTATCACAGTTCTTGAAGCTCCCATCATCTTCTTTCAGAAAGTCAAAGCCAAGAAGACGAACTTGTATTGGGATCTCTCTGTTTCTGAGTGTATATAACGTTACTTAAACTCCGCAGATTTGGTGGGAAAGGACGTGCTAATGCTAATGATAAAGTGTGTTAGAAAATTTCAACTTTTGTGTGCTGTGTTTTCTTTGTATTATCTGTAATGAAATTAAATATTGTTG

mRNA sequence

TCAGAGCAGAATTGTAATTTGTTTAAGATATTTTAAAATGGAAAGGGCTGGTGAAAGGCTTTTTATCCATTGGAATCATGTAGAGTAAAAGCATCAGAGCAAAAAAATTGTAGGATCCCATCAAGATGTACATGGAAAATGAAACATTTTCAGAGAGCCAAAAGCATTATGGCAACAAAGGTGAAGCCAACAGAGAGATGAATCCTGGAACTGCATCTGTAAGCCAATGATGGAGGAGGCGGAGGTTTGGGGGATGCTGAAGGAATCAGTGGCTGATCAAATGGAAACAGAGGGATCTGAGGGTCCGGTGTCGGTGCTGATGATGGTGGAGTTGGTTCCGTGGGTGGTGCTGGAGGGCTGGGTTTAGAATCTGGTGGTGAAGCCTGAGGAGACTTTGCTGGTGGCTTTGTTGCAGCTTTTGGGGCGGAAGATGGAGGAGGAGATGTAGGAGCAGAGGGAGTGGAAGTAGGTGGCGGTGAAGACGGTGTTACTTCCGGCGGTGGAGATGGAGGCGTAGCTATGGAGGAAGGTGGCGGTGATGGATTTGCAAGGGTGTCAATTTCAACCTTCATTCCAGCAAGGCAATGGCCAGGCACCCCACAAATGAAGAATCTTTTACCTGATGTCAAAAGGGTAATCGCTGTACTGCCGCCAGTGTGCTTCTCTATGGGGTTGCTTGCGGAACAGGAGCTGAAATCTGGCTCATTGACTTCAAGCACATCATGGTTCGACGAATACTCGAAAACTGTCGAGGACTAAAATCAGTTATAGTTCCACGAGAAACAAAAATTGAGCTGAGAATGATATATTACGTATGGAGAAAAGATTAGAAGGGTTTAGAAGAAATAATAGAAAGGAGTAGTAACTGAGAACATCTCCAATGGTGAAGCTTTTGGAGGAAGCCCAAGACTGGAAGTTGGGGCCTATTTCCCAGCCACCAGAATCACCCACTGTATAGTTAATTGCCATCGCTAATTCAACAGCCATTGTGGCTGCAATTGCCAATGCCATTATCACAGTTCTTGAAGCTCCCATCATCTTCTTTCAGAAAGTCAAAGCCAAGAAGACGAACTTGTATTGGGATCTCTCTGTTTCTGAGTGTATATAACGTTACTTAAACTCCGCAGATTTGGTGGGAAAGGACGTGCTAATGCTAATGATAAAGTGTGTTAGAAAATTTCAACTTTTGTGTGCTGTGTTTTCTTTGTATTATCTGTAATGAAATTAAATATTGTTG

Coding sequence (CDS)

ATGGAGGAAGGTGGCGGTGATGGATTTGCAAGGGTGTCAATTTCAACCTTCATTCCAGCAAGGCAATGGCCAGGCACCCCACAAATGAAGAATCTTTTACCTGATGTCAAAAGGGTAATCGCTGTACTGCCGCCAGTGTGCTTCTCTATGGGGTTGCTTGCGGAACAGGAGCTGAAATCTGGCTCATTGACTTCAAGCACATCATGGTTCGACGAATACTCGAAAACTGTCGAGGACTAA

Protein sequence

MEEGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLAEQELKSGSLTSSTSWFDEYSKTVED
Homology
[Close]
BLAST of Cmc11g0293301 vs. NCBI nr
Match: KAF3327592.1 (hypothetical protein FCM35_KLT07710 [Carex littledalei])

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 14  ISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLAEQELKSGSLTSSTSWFD 72
           I TF+P  QWP  PQMK L+P  +RV  VLP VC ++GL    E K   +TSSTS  D
Sbjct: 64  ICTFMPPEQWPVIPQMKYLVPTAERVTTVLPSVCVAIGLELVHESKFACVTSSTSCCD 121

[Close]
BLAST of Cmc11g0293301 vs. NCBI nr
Match: KAF5746040.1 (hypothetical protein HS088_TW06G00205 [Tripterygium wilfordii])

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 3   EGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLA 55
           +G G   ARVSISTFIP  QWPG PQMK LLP   R + VLP     + LLA
Sbjct: 82  DGVGVAVARVSISTFIPELQWPGVPQMKYLLPGDDRAMTVLPSEWLLIALLA 133

[Close]
BLAST of Cmc11g0293301 vs. NCBI nr
Match: KAF9679080.1 (hypothetical protein SADUNF_Sadunf07G0102900 [Salix dunnii])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 2   EEGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLAEQE 58
           E GGG   ARVSIS+FIP  Q PG  Q+K LLP  +RV+AV+PP+    GL   QE
Sbjct: 357 EAGGGVEVARVSISSFIPPLQCPGVAQVKYLLPGDERVMAVVPPLYDCSGLDIWQE 412

[Close]
BLAST of Cmc11g0293301 vs. ExPASy TrEMBL
Match: A0A7J7DI51 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G00205 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 3   EGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLA 55
           +G G   ARVSISTFIP  QWPG PQMK LLP   R + VLP     + LLA
Sbjct: 82  DGVGVAVARVSISTFIPELQWPGVPQMKYLLPGDDRAMTVLPSEWLLIALLA 133

The following BLAST results are available for this feature:
BLAST of Cmc11g0293301 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3327592.11.3e-0551.72hypothetical protein FCM35_KLT07710 [Carex littledalei][more]
KAF5746040.15.0e-0557.69hypothetical protein HS088_TW06G00205 [Tripterygium wilfordii][more]
KAF9679080.11.9e-0455.36hypothetical protein SADUNF_Sadunf07G0102900 [Salix dunnii][more]
BLAST of Cmc11g0293301 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc11g0293301 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J7DI512.4e-0557.69Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G00205 ... [more]
BLAST of Cmc11g0293301 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0293301.1Cmc11g0293301.1mRNA