Cmc11g0293301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0293301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr11: 9466515 .. 9467751 (+)
RNA-Seq Expression	Cmc11g0293301
Synteny	Cmc11g0293301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGAGCAGAATTGTAATTTGTTTAAGATATTTTAAAATGGAAAGGGCTGGTGAAAGGCTTTTTATCCATTGGAATCATGTAGAGTAAAAGCATCAGAGCAAAAAAATTGTAGGATCCCATCAAGATGTACATGGAAAATGAAACATTTTCAGAGAGCCAAAAGCATTATGGCAACAAAGGTGAAGCCAACAGAGAGATGAATCCTGGAACTGCATCTGTAAGCCAATGATGGAGGAGGCGGAGGTTTGGGGGATGCTGAAGGAATCAGTGGCTGATCAAATGGAAACAGAGGGATCTGAGGGTCCGGTGTCGGTGCTGATGATGGTGGAGTTGGTTCCGTGGGTGGTGCTGGAGGGCTGGGTTTAGAATCTGGTGGTGAAGCCTGAGGAGACTTTGCTGGTGGCTTTGTTGCAGCTTTTGGGGCGGAAGATGGAGGAGGAGATGTAGGAGCAGAGGGAGTGGAAGTAGGTGGCGGTGAAGACGGTGTTACTTCCGGCGGTGGAGATGGAGGCGTAGCTATGGAGGAAGGTGGCGGTGATGGATTTGCAAGGGTGTCAATTTCAACCTTCATTCCAGCAAGGCAATGGCCAGGCACCCCACAAATGAAGAATCTTTTACCTGATGTCAAAAGGGTAATCGCTGTACTGCCGCCAGTGTGCTTCTCTATGGGGTTGCTTGCGGAACAGGAGCTGAAATCTGGCTCATTGACTTCAAGCACATCATGGTTCGACGAATACTCGAAAACTGTCGAGGACTAAAATCAGTTATAGTTCCACGAGAAACAAAAATTGAGCTGAGAATGATATATTACGTATGGAGAAAAGATTAGAAGGGTTTAGAAGAAATAATAGAAAGGAGTAGTAACTGAGAACATCTCCAATGGTGAAGCTTTTGGAGGAAGCCCAAGACTGGAAGTTGGGGCCTATTTCCCAGCCACCAGAATCACCCACTGTATAGTTAATTGCCATCGCTAATTCAACAGCCATTGTGGCTGCAATTGCCAATGCCATTATCACAGTTCTTGAAGCTCCCATCATCTTCTTTCAGAAAGTCAAAGCCAAGAAGACGAACTTGTATTGGGATCTCTCTGTTTCTGAGTGTATATAACGTTACTTAAACTCCGCAGATTTGGTGGGAAAGGACGTGCTAATGCTAATGATAAAGTGTGTTAGAAAATTTCAACTTTTGTGTGCTGTGTTTTCTTTGTATTATCTGTAATGAAATTAAATATTGTTG

mRNA sequence

TCAGAGCAGAATTGTAATTTGTTTAAGATATTTTAAAATGGAAAGGGCTGGTGAAAGGCTTTTTATCCATTGGAATCATGTAGAGTAAAAGCATCAGAGCAAAAAAATTGTAGGATCCCATCAAGATGTACATGGAAAATGAAACATTTTCAGAGAGCCAAAAGCATTATGGCAACAAAGGTGAAGCCAACAGAGAGATGAATCCTGGAACTGCATCTGTAAGCCAATGATGGAGGAGGCGGAGGTTTGGGGGATGCTGAAGGAATCAGTGGCTGATCAAATGGAAACAGAGGGATCTGAGGGTCCGGTGTCGGTGCTGATGATGGTGGAGTTGGTTCCGTGGGTGGTGCTGGAGGGCTGGGTTTAGAATCTGGTGGTGAAGCCTGAGGAGACTTTGCTGGTGGCTTTGTTGCAGCTTTTGGGGCGGAAGATGGAGGAGGAGATGTAGGAGCAGAGGGAGTGGAAGTAGGTGGCGGTGAAGACGGTGTTACTTCCGGCGGTGGAGATGGAGGCGTAGCTATGGAGGAAGGTGGCGGTGATGGATTTGCAAGGGTGTCAATTTCAACCTTCATTCCAGCAAGGCAATGGCCAGGCACCCCACAAATGAAGAATCTTTTACCTGATGTCAAAAGGGTAATCGCTGTACTGCCGCCAGTGTGCTTCTCTATGGGGTTGCTTGCGGAACAGGAGCTGAAATCTGGCTCATTGACTTCAAGCACATCATGGTTCGACGAATACTCGAAAACTGTCGAGGACTAAAATCAGTTATAGTTCCACGAGAAACAAAAATTGAGCTGAGAATGATATATTACGTATGGAGAAAAGATTAGAAGGGTTTAGAAGAAATAATAGAAAGGAGTAGTAACTGAGAACATCTCCAATGGTGAAGCTTTTGGAGGAAGCCCAAGACTGGAAGTTGGGGCCTATTTCCCAGCCACCAGAATCACCCACTGTATAGTTAATTGCCATCGCTAATTCAACAGCCATTGTGGCTGCAATTGCCAATGCCATTATCACAGTTCTTGAAGCTCCCATCATCTTCTTTCAGAAAGTCAAAGCCAAGAAGACGAACTTGTATTGGGATCTCTCTGTTTCTGAGTGTATATAACGTTACTTAAACTCCGCAGATTTGGTGGGAAAGGACGTGCTAATGCTAATGATAAAGTGTGTTAGAAAATTTCAACTTTTGTGTGCTGTGTTTTCTTTGTATTATCTGTAATGAAATTAAATATTGTTG

Coding sequence (CDS)

ATGGAGGAAGGTGGCGGTGATGGATTTGCAAGGGTGTCAATTTCAACCTTCATTCCAGCAAGGCAATGGCCAGGCACCCCACAAATGAAGAATCTTTTACCTGATGTCAAAAGGGTAATCGCTGTACTGCCGCCAGTGTGCTTCTCTATGGGGTTGCTTGCGGAACAGGAGCTGAAATCTGGCTCATTGACTTCAAGCACATCATGGTTCGACGAATACTCGAAAACTGTCGAGGACTAA

Protein sequence

MEEGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLAEQELKSGSLTSSTSWFDEYSKTVED

Homology

[Close]

BLAST of Cmc11g0293301 vs. NCBI nr
Match: KAF3327592.1 (hypothetical protein FCM35_KLT07710 [Carex littledalei])

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 14  ISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLAEQELKSGSLTSSTSWFD 72
           I TF+P  QWP  PQMK L+P  +RV  VLP VC ++GL    E K   +TSSTS  D
Sbjct: 64  ICTFMPPEQWPVIPQMKYLVPTAERVTTVLPSVCVAIGLELVHESKFACVTSSTSCCD 121

[Close]

BLAST of Cmc11g0293301 vs. NCBI nr
Match: KAF5746040.1 (hypothetical protein HS088_TW06G00205 [Tripterygium wilfordii])

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 3   EGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLA 55
           +G G   ARVSISTFIP  QWPG PQMK LLP   R + VLP     + LLA
Sbjct: 82  DGVGVAVARVSISTFIPELQWPGVPQMKYLLPGDDRAMTVLPSEWLLIALLA 133

[Close]

BLAST of Cmc11g0293301 vs. NCBI nr
Match: KAF9679080.1 (hypothetical protein SADUNF_Sadunf07G0102900 [Salix dunnii])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 2   EEGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLAEQE 58
           E GGG   ARVSIS+FIP  Q PG  Q+K LLP  +RV+AV+PP+    GL   QE
Sbjct: 357 EAGGGVEVARVSISSFIPPLQCPGVAQVKYLLPGDERVMAVVPPLYDCSGLDIWQE 412

[Close]

BLAST of Cmc11g0293301 vs. ExPASy TrEMBL
Match: A0A7J7DI51 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G00205 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 3   EGGGDGFARVSISTFIPARQWPGTPQMKNLLPDVKRVIAVLPPVCFSMGLLA 55
           +G G   ARVSISTFIP  QWPG PQMK LLP   R + VLP     + LLA
Sbjct: 82  DGVGVAVARVSISTFIPELQWPGVPQMKYLLPGDDRAMTVLPSEWLLIALLA 133

The following BLAST results are available for this feature:

BLAST of Cmc11g0293301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3327592.1	1.3e-05	51.72	hypothetical protein FCM35_KLT07710 [Carex littledalei]	[more]
KAF5746040.1	5.0e-05	57.69	hypothetical protein HS088_TW06G00205 [Tripterygium wilfordii]	[more]
KAF9679080.1	1.9e-04	55.36	hypothetical protein SADUNF_Sadunf07G0102900 [Salix dunnii]	[more]

BLAST of Cmc11g0293301 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0293301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7DI51	2.4e-05	57.69	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G00205 ...	[more]

BLAST of Cmc11g0293301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0293301.1	Cmc11g0293301.1	mRNA