Cmc11g0292361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0292361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr11: 8006187 .. 8006888 (-)
RNA-Seq Expression	Cmc11g0292361
Synteny	Cmc11g0292361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTAATGCCACTTGTCAGTCTTTGAATATTTCATCTATAGTCGATACAGGAAATGAGATAAATGCTACCACAATTAACTTACCTGATCCACCTCCTTCCCGGAATACTCATGCTATGCAAACTCGAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTCCCACATCATATACAGAAGCCTCCAAATATCCAGAATGGCGAACTGCGATGCATGAGGAATTCAATGCTCTTCAAGCACAAGGTACCTGGTCCCTAGTACCTCGACTTCCATCTATGAATATTGTTGGTTGTAAAGGTTATCATCAGGTACAAGGTTTTGATTTTGATGAAACATTTAGTCCTGTTGTTAAGAAACCTACCATACGCATCATTCTTGCTCTTGCTGCTCAATACAATTGGTCTTTAACCCAGTTAGATGTCAAAAATGCCTTTCTTCATGGTATTCTTCAAGAAACAGTGTACATGACTCAACCTACTGGCTTCCAAGACAAAACATGTCCCAATCATGTGTGTCTCCTCCACAAGAGTCTTTATGGTCTCAAACAGGCCCCTCGCCCTTGGTTTGAACGCTTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGCTGATCCGTCATTATTCATTCGATCAGTCGGATCCTTTCTCACTTACTTTTGTATGTAG

mRNA sequence

ATGGATACTAATGCCACTTGTCAGTCTTTGAATATTTCATCTATAGTCGATACAGGAAATGAGATAAATGCTACCACAATTAACTTACCTGATCCACCTCCTTCCCGGAATACTCATGCTATGCAAACTCGAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTCCCACATCATATACAGAAGCCTCCAAATATCCAGAATGGCGAACTGCGATGCATGAGGAATTCAATGCTCTTCAAGCACAAGGTACCTGGTCCCTAGTACCTCGACTTCCATCTATGAATATTGTTGGTTGTAAAGGTTATCATCAGGTACAAGGTTTTGATTTTGATGAAACATTTAGTCCTGTTGTTAAGAAACCTACCATACGCATCATTCTTGCTCTTGCTGCTCAATACAATTGGTCTTTAACCCAGTTAGATGTCAAAAATGCCTTTCTTCATGGTATTCTTCAAGAAACAGTGTACATGACTCAACCTACTGGCTTCCAAGACAAAACATGTCCCAATCATGTGTGTCTCCTCCACAAGAGTCTTTATGGTCTCAAACAGGCCCCTCGCCCTTGGTTTGAACGCTTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGCTGATCCGTCATTATTCATTCGATCAGTCGGATCCTTTCTCACTTACTTTTGTATGTAG

Coding sequence (CDS)

ATGGATACTAATGCCACTTGTCAGTCTTTGAATATTTCATCTATAGTCGATACAGGAAATGAGATAAATGCTACCACAATTAACTTACCTGATCCACCTCCTTCCCGGAATACTCATGCTATGCAAACTCGAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTCCCACATCATATACAGAAGCCTCCAAATATCCAGAATGGCGAACTGCGATGCATGAGGAATTCAATGCTCTTCAAGCACAAGGTACCTGGTCCCTAGTACCTCGACTTCCATCTATGAATATTGTTGGTTGTAAAGGTTATCATCAGGTACAAGGTTTTGATTTTGATGAAACATTTAGTCCTGTTGTTAAGAAACCTACCATACGCATCATTCTTGCTCTTGCTGCTCAATACAATTGGTCTTTAACCCAGTTAGATGTCAAAAATGCCTTTCTTCATGGTATTCTTCAAGAAACAGTGTACATGACTCAACCTACTGGCTTCCAAGACAAAACATGTCCCAATCATGTGTGTCTCCTCCACAAGAGTCTTTATGGTCTCAAACAGGCCCCTCGCCCTTGGTTTGAACGCTTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGCTGATCCGTCATTATTCATTCGATCAGTCGGATCCTTTCTCACTTACTTTTGTATGTAG

Protein sequence

MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADPSLFIRSVGSFLTYFCM

Homology

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BLAST of Cmc11g0292361 vs. NCBI nr
Match: KAA0066360.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00923.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 410.6 bits (1054), Expect = 9.0e-111
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDE 120
           LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDE
Sbjct: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDE 120

Query: 121 TFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHV 180
           TFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHV
Sbjct: 121 TFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHV 180

Query: 181 CLLHKSLYGLKQAPRP 197
           CLLHKSLYGLKQAPRP
Sbjct: 181 CLLHKSLYGLKQAPRP 196

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BLAST of Cmc11g0292361 vs. NCBI nr
Match: TYJ96936.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 381.7 bits (979), Expect = 4.5e-102
Identity = 195/256 (76.17%), Postives = 200/256 (78.12%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLN+SS VDTGNEINATTINLPDPPP RNTHAMQTRAKSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSGIFKPKAFHITTA 60

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------- 120
           LPTPTSYTEASKYPEW+TAMHEEFNALQAQGTWSLVPRLPS N+VGC             
Sbjct: 61  LPTPTSYTEASKYPEWQTAMHEEFNALQAQGTWSLVPRLPSKNVVGCKWVFRIKYNPDGT 120

Query: 121 ----------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 180
                     KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG
Sbjct: 121 IARHKARLVAKGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 180

Query: 181 ILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADP 234
           ILQETVYMTQP  FQDKTCPNHVCLLHKSLY                          ADP
Sbjct: 181 ILQETVYMTQPIDFQDKTCPNHVCLLHKSLY--------------------------ADP 230

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BLAST of Cmc11g0292361 vs. NCBI nr
Match: KAA0045362.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 375.9 bits (964), Expect = 2.5e-100
Identity = 193/256 (75.39%), Postives = 197/256 (76.95%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLN+SS VDTGNEINATTINLPDPPP RNTHAMQTRAKS IFKPKAFHITTA
Sbjct: 112 MDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSDIFKPKAFHITTA 171

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------- 120
           LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPS N+VGC             
Sbjct: 172 LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSKNVVGCKWVFRIKYNPDGT 231

Query: 121 ----------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 180
                     KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKN F HG
Sbjct: 232 IARHKARLVAKGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNDFFHG 291

Query: 181 ILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADP 234
           ILQETVYMTQ T FQDKTCPNHVCLLHKSLY                          ADP
Sbjct: 292 ILQETVYMTQSTDFQDKTCPNHVCLLHKSLY--------------------------ADP 341

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BLAST of Cmc11g0292361 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.8 bits (808), Expect = 3.0e-82
Identity = 160/221 (72.40%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 13  SSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASK 72
           ++ VDTGNEINATTINLPDPP   NTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASK
Sbjct: 296 NNFVDTGNEINATTINLPDPPSPWNTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASK 355

Query: 73  YPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDETFSPVVKKPTIR 132
           YPEWRT MHEEFNALQAQGTWSLVPRLPSMN+VGCK   +++ ++ D T    + +   R
Sbjct: 356 YPEWRTPMHEEFNALQAQGTWSLVPRLPSMNVVGCKWVFRIK-YNLDGT----IARHKAR 415

Query: 133 IILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQ 192
           ++                      G  QETVYMTQPTGFQ+KTCPNHVCLLHKSLYGLKQ
Sbjct: 416 LV--------------------AKGYHQETVYMTQPTGFQNKTCPNHVCLLHKSLYGLKQ 475

Query: 193 APRPWFERFTSYLFTLGFVASTADPSLFIRSVGSFLTYFCM 234
           APR WFERFTSYLFTLGFVASTADPSLFIRSVGS LTY  +
Sbjct: 476 APRAWFERFTSYLFTLGFVASTADPSLFIRSVGSSLTYLLL 491

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BLAST of Cmc11g0292361 vs. NCBI nr
Match: TYK19790.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 8.2e-80
Identity = 156/200 (78.00%), Postives = 161/200 (80.50%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLN+SS VDTGNEINAT INLPDPPP RNTHAMQTR KSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNVSSTVDTGNEINATIINLPDPPPPRNTHAMQTREKSGIFKPKAFHITTA 60

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------- 120
           LPTPTSYTEASKYP     +HEEFNALQAQGTWSLVPRLPSMN+VGC             
Sbjct: 61  LPTPTSYTEASKYPN----IHEEFNALQAQGTWSLVPRLPSMNVVGCKWIFRIKYNLNGT 120

Query: 121 ----------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 178
                     KGYHQVQGFDFDETFS VVKKPTIRIILA AAQYNWSLTQLDVKN FLH 
Sbjct: 121 IARHNARQVPKGYHQVQGFDFDETFSHVVKKPTIRIILAFAAQYNWSLTQLDVKNGFLHD 180

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BLAST of Cmc11g0292361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.6e-46
Identity = 101/222 (45.50%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 37   NTHAMQTRAKSGIFKPK-AFHITTALPT---PTSYTEASKYPEWRTAMHEEFNALQAQGT 96
            NTH+M TRAK+GI KP   + +  +L     P +  +A K   WR AM  E NA     T
Sbjct: 925  NTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHT 984

Query: 97   WSLVPRLPS-MNIVGC-----------------------KGYHQVQGFDFDETFSPVVKK 156
            W LVP  PS + IVGC                       KGY+Q  G D+ ETFSPV+K 
Sbjct: 985  WDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKS 1044

Query: 157  PTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHVCLLHKSLY 216
             +IRI+L +A   +W + QLDV NAFL G L + VYM+QP GF DK  PN+VC L K+LY
Sbjct: 1045 TSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALY 1104

Query: 217  GLKQAPRPWFERFTSYLFTLGFVASTADPSLFIRSVGSFLTY 231
            GLKQAPR W+    +YL T+GFV S +D SLF+   G  + Y
Sbjct: 1105 GLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVY 1146

[Close]

BLAST of Cmc11g0292361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.8e-45
Identity = 104/237 (43.88%), Postives = 132/237 (55.70%), Query Frame = 0


Query: 29   LPDPPPSR-------NTHAMQTRAKSGIFKP-KAFHITTALPT---PTSYTEASKYPEWR 88
            LP PP  +       NTH+M TRAK GI KP + +   T+L     P +  +A K   WR
Sbjct: 893  LPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWR 952

Query: 89   TAMHEEFNALQAQGTWSLV-PRLPSMNIVGC-----------------------KGYHQV 148
             AM  E NA     TW LV P  PS+ IVGC                       KGY+Q 
Sbjct: 953  QAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQR 1012

Query: 149  QGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQD 208
             G D+ ETFSPV+K  +IRI+L +A   +W + QLDV NAFL G L + VYM+QP GF D
Sbjct: 1013 PGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVD 1072

Query: 209  KTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADPSLFIRSVGSFLTY 231
            K  P++VC L K++YGLKQAPR W+    +YL T+GFV S +D SLF+   G  + Y
Sbjct: 1073 KDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIY 1129

[Close]

BLAST of Cmc11g0292361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-30
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 0


Query: 15  IVDTGNEINATTINLPDPPPSRNTH-----AMQTRAKSGIFKPKAFHITTALPTPTSYTE 74
           +++ G +++     +  P      H     + + R +S  +    + + +    P S  E
Sbjct: 757 VIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKE 816

Query: 75  ASKYPE---WRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------------- 134
              +PE      AM EE  +LQ  GT+ LV        + C                   
Sbjct: 817 VLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKA 876

Query: 135 ----KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETV 194
               KG+ Q +G DFDE FSPVVK  +IR IL+LAA  +  + QLDVK AFLHG L+E +
Sbjct: 877 RLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEI 936

Query: 195 YMTQPTGFQDKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADPSLFIR 223
           YM QP GF+     + VC L+KSLYGLKQAPR W+ +F S++ +  ++ + +DP ++ +
Sbjct: 937 YMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFK 995

[Close]

BLAST of Cmc11g0292361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24
Identity = 62/174 (35.63%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 76   WRTAMHEEFNALQAQGTWSLVPRLPSMNIVG-----------------------CKGYHQ 135
            W  A++ E NA +   TW++  R  + NIV                         +G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 136  VQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQ 195
                D++ETF+PV +  + R IL+L  QYN  + Q+DVK AFL+G L+E +YM  P G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 196  DKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADPSLFIRSVGS 227
              +  ++VC L+K++YGLKQA R WFE F   L    FV S+ D  ++I   G+
Sbjct: 1026 CNS--DNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGN 1077

[Close]

BLAST of Cmc11g0292361 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.4e-12
Identity = 52/127 (40.94%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 41  MQTRAKSGIFK--PK-AFHITTAL-PTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLV 100
           M TR+K+GI K  PK +  ITT +   P S   A K P W  AM EE +AL    TW LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 101 PRLPSMNIVGC-----------------------KGYHQVQGFDFDETFSPVVKKPTIRI 141
           P   + NI+GC                       KG+HQ +G  F ET+SPVV+  TIR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

[Close]

BLAST of Cmc11g0292361 vs. ExPASy TrEMBL
Match: A0A5A7VGR9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00920 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.3e-111
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDE 120
           LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDE
Sbjct: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDE 120

Query: 121 TFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHV 180
           TFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHV
Sbjct: 121 TFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHV 180

Query: 181 CLLHKSLYGLKQAPRP 197
           CLLHKSLYGLKQAPRP
Sbjct: 181 CLLHKSLYGLKQAPRP 196

[Close]

BLAST of Cmc11g0292361 vs. ExPASy TrEMBL
Match: A0A5D3BD76 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00410 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.2e-102
Identity = 195/256 (76.17%), Postives = 200/256 (78.12%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLN+SS VDTGNEINATTINLPDPPP RNTHAMQTRAKSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSGIFKPKAFHITTA 60

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------- 120
           LPTPTSYTEASKYPEW+TAMHEEFNALQAQGTWSLVPRLPS N+VGC             
Sbjct: 61  LPTPTSYTEASKYPEWQTAMHEEFNALQAQGTWSLVPRLPSKNVVGCKWVFRIKYNPDGT 120

Query: 121 ----------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 180
                     KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG
Sbjct: 121 IARHKARLVAKGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 180

Query: 181 ILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADP 234
           ILQETVYMTQP  FQDKTCPNHVCLLHKSLY                          ADP
Sbjct: 181 ILQETVYMTQPIDFQDKTCPNHVCLLHKSLY--------------------------ADP 230

[Close]

BLAST of Cmc11g0292361 vs. ExPASy TrEMBL
Match: A0A5A7TPR4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001410 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.2e-100
Identity = 193/256 (75.39%), Postives = 197/256 (76.95%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLN+SS VDTGNEINATTINLPDPPP RNTHAMQTRAKS IFKPKAFHITTA
Sbjct: 112 MDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSDIFKPKAFHITTA 171

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------- 120
           LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPS N+VGC             
Sbjct: 172 LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSKNVVGCKWVFRIKYNPDGT 231

Query: 121 ----------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 180
                     KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKN F HG
Sbjct: 232 IARHKARLVAKGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNDFFHG 291

Query: 181 ILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTADP 234
           ILQETVYMTQ T FQDKTCPNHVCLLHKSLY                          ADP
Sbjct: 292 ILQETVYMTQSTDFQDKTCPNHVCLLHKSLY--------------------------ADP 341

[Close]

BLAST of Cmc11g0292361 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.5e-82
Identity = 160/221 (72.40%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 13  SSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASK 72
           ++ VDTGNEINATTINLPDPP   NTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASK
Sbjct: 296 NNFVDTGNEINATTINLPDPPSPWNTHAMQTRAKSGIFKPKAFHITTALPTPTSYTEASK 355

Query: 73  YPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGCKGYHQVQGFDFDETFSPVVKKPTIR 132
           YPEWRT MHEEFNALQAQGTWSLVPRLPSMN+VGCK   +++ ++ D T    + +   R
Sbjct: 356 YPEWRTPMHEEFNALQAQGTWSLVPRLPSMNVVGCKWVFRIK-YNLDGT----IARHKAR 415

Query: 133 IILALAAQYNWSLTQLDVKNAFLHGILQETVYMTQPTGFQDKTCPNHVCLLHKSLYGLKQ 192
           ++                      G  QETVYMTQPTGFQ+KTCPNHVCLLHKSLYGLKQ
Sbjct: 416 LV--------------------AKGYHQETVYMTQPTGFQNKTCPNHVCLLHKSLYGLKQ 475

Query: 193 APRPWFERFTSYLFTLGFVASTADPSLFIRSVGSFLTYFCM 234
           APR WFERFTSYLFTLGFVASTADPSLFIRSVGS LTY  +
Sbjct: 476 APRAWFERFTSYLFTLGFVASTADPSLFIRSVGSSLTYLLL 491

[Close]

BLAST of Cmc11g0292361 vs. ExPASy TrEMBL
Match: A0A5D3D8K1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00150 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.0e-80
Identity = 156/200 (78.00%), Postives = 161/200 (80.50%), Query Frame = 0


Query: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60
           MDTNATCQSLN+SS VDTGNEINAT INLPDPPP RNTHAMQTR KSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNVSSTVDTGNEINATIINLPDPPPPRNTHAMQTREKSGIFKPKAFHITTA 60

Query: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC------------- 120
           LPTPTSYTEASKYP     +HEEFNALQAQGTWSLVPRLPSMN+VGC             
Sbjct: 61  LPTPTSYTEASKYPN----IHEEFNALQAQGTWSLVPRLPSMNVVGCKWIFRIKYNLNGT 120

Query: 121 ----------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHG 178
                     KGYHQVQGFDFDETFS VVKKPTIRIILA AAQYNWSLTQLDVKN FLH 
Sbjct: 121 IARHNARQVPKGYHQVQGFDFDETFSHVVKKPTIRIILAFAAQYNWSLTQLDVKNGFLHD 180

[Close]

BLAST of Cmc11g0292361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-34
Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 0


Query: 64  PTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVPRLPSMNIVGC---------------- 123
           P++Y EA ++  W  AM +E  A++   TW +    P+   +GC                
Sbjct: 86  PSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIER 145

Query: 124 -------KGYHQVQGFDFDETFSPVVKKPTIRIILALAAQYNWSLTQLDVKNAFLHGILQ 183
                  KGY Q +G DF ETFSPV K  ++++ILA++A YN++L QLD+ NAFL+G L 
Sbjct: 146 YKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLD 205

Query: 184 ETVYMTQPTGFQ----DKTCPNHVCLLHKSLYGLKQAPRPWFERFTSYLFTLGFVASTAD 223
           E +YM  P G+     D   PN VC L KS+YGLKQA R WF +F+  L   GFV S +D
Sbjct: 206 EEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD 265

[Close]

BLAST of Cmc11g0292361 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 52/127 (40.94%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 41  MQTRAKSGIFK--PK-AFHITTAL-PTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLV 100
           M TR+K+GI K  PK +  ITT +   P S   A K P W  AM EE +AL    TW LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 101 PRLPSMNIVGC-----------------------KGYHQVQGFDFDETFSPVVKKPTIRI 141
           P   + NI+GC                       KG+HQ +G  F ET+SPVV+  TIR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

The following BLAST results are available for this feature:

BLAST of Cmc11g0292361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066360.1	9.0e-111	100.00	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00923.1 putative m...	[more]
TYJ96936.1	4.5e-102	76.17	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0045362.1	2.5e-100	75.39	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0061282.1	3.0e-82	72.40	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]
TYK19790.1	8.2e-80	78.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0292361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.6e-46	45.50	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	6.8e-45	43.88	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	6.2e-30	33.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-24	35.63	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	3.4e-12	40.94	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc11g0292361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGR9	4.3e-111	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BD76	2.2e-102	76.17	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TPR4	1.2e-100	75.39	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UZE5	1.5e-82	72.40	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3D8K1	4.0e-80	78.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cmc11g0292361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.3e-34	39.78	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.4e-13	40.94	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 107..226 e-value: 1.9E-36 score: 125.9
None	No IPR available	PANTHER	PTHR11439:SF331	SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED	coord: 75..230
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 75..230
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 118..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0292361.1	Cmc11g0292361.1	mRNA