Cmc11g0292251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0292251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 7834691 .. 7835149 (+)
RNA-Seq Expression	Cmc11g0292251
Synteny	Cmc11g0292251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGTTATGCTGACTTAGTTGCTTATGCTCTTACTTGTGCAGCTAACAGTATTAAAGTAGAGCCTTTTACTTTTGAAGAGGCAATTGTATATGATTCACAGAAACAATGGAAGGATGCTATGGAAGTAGAGTTGTTCTCTTTACAGAATAATCAGACATGGTCACTAGTTCCAAAGCCTTATAATCAGAAACTCATTCAATCACAGTGGATTTACAAAATCAAGCTAGATACAGGAGGTAACAGTAAGCCTAGGTATAAGGCTAGGTTGGTAGCCAAGGGCTACACTCAAAAGAAGAGAGTTGACTTTCATGAGATTTTCTCTCCGGCGGTGAGACATTCGTCCATTAGATTAAACTTATCTATTGCTGTTCACTTTGATATATTTATTGAACAGATGGATGTCAGTACATCATTCCATCATGGAGAACTGGAGGAGGTGATTTACATGGCTTAA

mRNA sequence

ATGTATGGTTATGCTGACTTAGTTGCTTATGCTCTTACTTGTGCAGCTAACAGTATTAAAGTAGAGCCTTTTACTTTTGAAGAGGCAATTGTATATGATTCACAGAAACAATGGAAGGATGCTATGGAAGTAGAGTTGTTCTCTTTACAGAATAATCAGACATGGTCACTAGTTCCAAAGCCTTATAATCAGAAACTCATTCAATCACAGTGGATTTACAAAATCAAGCTAGATACAGGAGGTAACAGTAAGCCTAGGTATAAGGCTAGGTTGGTAGCCAAGGGCTACACTCAAAAGAAGAGAGTTGACTTTCATGAGATTTTCTCTCCGGCGGTGAGACATTCGTCCATTAGATTAAACTTATCTATTGCTGTTCACTTTGATATATTTATTGAACAGATGGATGTCAGTACATCATTCCATCATGGAGAACTGGAGGAGGTGATTTACATGGCTTAA

Coding sequence (CDS)

ATGTATGGTTATGCTGACTTAGTTGCTTATGCTCTTACTTGTGCAGCTAACAGTATTAAAGTAGAGCCTTTTACTTTTGAAGAGGCAATTGTATATGATTCACAGAAACAATGGAAGGATGCTATGGAAGTAGAGTTGTTCTCTTTACAGAATAATCAGACATGGTCACTAGTTCCAAAGCCTTATAATCAGAAACTCATTCAATCACAGTGGATTTACAAAATCAAGCTAGATACAGGAGGTAACAGTAAGCCTAGGTATAAGGCTAGGTTGGTAGCCAAGGGCTACACTCAAAAGAAGAGAGTTGACTTTCATGAGATTTTCTCTCCGGCGGTGAGACATTCGTCCATTAGATTAAACTTATCTATTGCTGTTCACTTTGATATATTTATTGAACAGATGGATGTCAGTACATCATTCCATCATGGAGAACTGGAGGAGGTGATTTACATGGCTTAA

Protein sequence

MYGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMDVSTSFHHGELEEVIYMA

Homology

[Close]

BLAST of Cmc11g0292251 vs. NCBI nr
Match: KAA0066339.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK00939.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.5e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 16  ANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKI 75
           ANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKI
Sbjct: 220 ANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKI 279

Query: 76  KLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMD 135
           KLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMD
Sbjct: 280 KLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMD 339

Query: 136 VSTSFHHGELEEVIYMA 153
           VSTSFHHGELEEVIYMA
Sbjct: 340 VSTSFHHGELEEVIYMA 356

[Close]

BLAST of Cmc11g0292251 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+SI+ EP TFEEAIV DS+KQWKDAME ELFSL  NQTWSLVPKP
Sbjct: 632 YGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKP 691

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  TGGNSKPRYKARLVAKGYTQK+ VDFHEIFSP VRHSSIRL L
Sbjct: 692 PNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLIL 751

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 752 SIAVHFDMFIEQMDVTTAFLHGELEEVIYMA 782

[Close]

BLAST of Cmc11g0292251 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+SI+ EP TFEEAIV DS+KQWKDAME ELFSL  NQTWSLVPKP
Sbjct: 802 YGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKP 861

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  TGGNSKPRYKARLVAKGYTQK+ VDFHEIFSP VRHSSIRL L
Sbjct: 862 PNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLIL 921

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 922 SIAVHFDMFIEQMDVTTAFLHGELEEVIYMA 952

[Close]

BLAST of Cmc11g0292251 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+SI+ EP TFEEAIV DS+KQWKDAME ELFSL  NQTWSLVPKP
Sbjct: 802 YGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKP 861

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  TGGNSKPRYKARLVAKGYTQK+ VDFHEIFSP VRHSSIRL L
Sbjct: 862 PNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLIL 921

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 922 SIAVHFDMFIEQMDVTTAFLHGELEEVIYMA 952

[Close]

BLAST of Cmc11g0292251 vs. NCBI nr
Match: KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.9e-63
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+ I+ +P TFE+AIV DS+K+WKD MEVELFSL  NQTWSLVPKP
Sbjct: 662 YGYADLVAYALTCAADGIEEKPLTFEKAIVSDSKKRWKDVMEVELFSLHKNQTWSLVPKP 721

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  T GNSKPRYKARLVAKGYTQK+ VDFHE+FSP VRHSSIRL L
Sbjct: 722 LNQKLIQSKWIYKIKPGTWGNSKPRYKARLVAKGYTQKEGVDFHEVFSPVVRHSSIRLIL 781

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 782 SIAVHFDMFIEQMDVTTTFLHGELEEVIYMA 812

[Close]

BLAST of Cmc11g0292251 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 22  EPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKIKLDTGG 81
           EP + +E + +  + Q   AM+ E+ SLQ N T+ LV  P  ++ ++ +W++K+K D G 
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD-GD 869

Query: 82  NSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMDVSTSFH 141
               RYKARLV KG+ QKK +DF EIFSP V+ +SIR  LS+A   D+ +EQ+DV T+F 
Sbjct: 870 CKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 929

Query: 142 HGELEEVIYM 152
           HG+LEE IYM
Sbjct: 930 HGDLEEEIYM 938

[Close]

BLAST of Cmc11g0292251 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-24
Identity = 52/129 (40.31%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 23   PFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKIKLDTGGN 82
            P +F+E    D +  W++A+  EL + + N TW++  +P N+ ++ S+W++ +K +  GN
Sbjct: 891  PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 950

Query: 83   SKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMDVSTSFHH 142
               RYKARLVA+G+TQK ++D+ E F+P  R SS R  LS+ + +++ + QMDV T+F +
Sbjct: 951  -PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLN 1010

Query: 143  GELEEVIYM 152
            G L+E IYM
Sbjct: 1011 GTLKEEIYM 1018

[Close]

BLAST of Cmc11g0292251 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-19
Identity = 59/145 (40.69%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 9    AYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLV-PKPYNQKLI 68
            +YA + AANS   EP T  +A+  D   +W+ AM  E+ +   N TW LV P P +  ++
Sbjct: 928  SYATSLAANS---EPRTAIQAMKDD---RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIV 987

Query: 69   QSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHF 128
              +WI+  K ++ G S  RYKARLVAKGY Q+  +D+ E FSP ++ +SIR+ L +AV  
Sbjct: 988  GCRWIFTKKFNSDG-SLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDR 1047

Query: 129  DIFIEQMDVSTSFHHGELEEVIYMA 153
               I Q+DV+ +F  G L + +YM+
Sbjct: 1048 SWPIRQLDVNNAFLQGTLTDEVYMS 1065

[Close]

BLAST of Cmc11g0292251 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-18
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 11   ALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQ-KLIQS 70
            A++ AA S   EP T  +A+     ++W++AM  E+ +   N TW LVP P +   ++  
Sbjct: 947  AVSLAAES---EPRTAIQAL---KDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGC 1006

Query: 71   QWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDI 130
            +WI+  K ++ G S  RYKARLVAKGY Q+  +D+ E FSP ++ +SIR+ L +AV    
Sbjct: 1007 RWIFTKKYNSDG-SLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSW 1066

Query: 131  FIEQMDVSTSFHHGELEEVIYMA 153
             I Q+DV+ +F  G L + +YM+
Sbjct: 1067 PIRQLDVNNAFLQGTLTDDVYMS 1082

[Close]

BLAST of Cmc11g0292251 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-15
Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 10  YALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQS 69
           Y+LT    +IK EP   +  I       W  AM+ EL +L  N+TW LVP P NQ ++  
Sbjct: 16  YSLT-ITTTIKKEP---KSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGC 75

Query: 70  QWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDI 129
           +W++K KL + G +  R KARLVAKG+ Q++ + F E +SP VR ++IR  L++A   ++
Sbjct: 76  KWVFKTKLHSDG-TLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130

[Close]

BLAST of Cmc11g0292251 vs. ExPASy TrEMBL
Match: A0A5A7VLZ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001140 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 16  ANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKI 75
           ANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKI
Sbjct: 220 ANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQWIYKI 279

Query: 76  KLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMD 135
           KLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMD
Sbjct: 280 KLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFIEQMD 339

Query: 136 VSTSFHHGELEEVIYMA 153
           VSTSFHHGELEEVIYMA
Sbjct: 340 VSTSFHHGELEEVIYMA 356

[Close]

BLAST of Cmc11g0292251 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.2e-66
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+SI+ EP TFEEAIV DS+KQWKDAME ELFSL  NQTWSLVPKP
Sbjct: 802 YGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKP 861

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  TGGNSKPRYKARLVAKGYTQK+ VDFHEIFSP VRHSSIRL L
Sbjct: 862 PNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLIL 921

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 922 SIAVHFDMFIEQMDVTTAFLHGELEEVIYMA 952

[Close]

BLAST of Cmc11g0292251 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.2e-66
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+SI+ EP TFEEAIV DS+KQWKDAME ELFSL  NQTWSLVPKP
Sbjct: 632 YGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKP 691

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  TGGNSKPRYKARLVAKGYTQK+ VDFHEIFSP VRHSSIRL L
Sbjct: 692 PNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLIL 751

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 752 SIAVHFDMFIEQMDVTTAFLHGELEEVIYMA 782

[Close]

BLAST of Cmc11g0292251 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.2e-66
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+SI+ EP TFEEAIV DS+KQWKDAME ELFSL  NQTWSLVPKP
Sbjct: 802 YGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKP 861

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  TGGNSKPRYKARLVAKGYTQK+ VDFHEIFSP VRHSSIRL L
Sbjct: 862 PNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLIL 921

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 922 SIAVHFDMFIEQMDVTTAFLHGELEEVIYMA 952

[Close]

BLAST of Cmc11g0292251 vs. ExPASy TrEMBL
Match: A0A5A7VKC2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00310 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 2   YGYADLVAYALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKP 61
           YGYADLVAYALTCAA+ I+ +P TFE+AIV DS+K+WKD MEVELFSL  NQTWSLVPKP
Sbjct: 662 YGYADLVAYALTCAADGIEEKPLTFEKAIVSDSKKRWKDVMEVELFSLHKNQTWSLVPKP 721

Query: 62  YNQKLIQSQWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNL 121
            NQKLIQS+WIYKIK  T GNSKPRYKARLVAKGYTQK+ VDFHE+FSP VRHSSIRL L
Sbjct: 722 LNQKLIQSKWIYKIKPGTWGNSKPRYKARLVAKGYTQKEGVDFHEVFSPVVRHSSIRLIL 781

Query: 122 SIAVHFDIFIEQMDVSTSFHHGELEEVIYMA 153
           SIAVHFD+FIEQMDV+T+F HGELEEVIYMA
Sbjct: 782 SIAVHFDMFIEQMDVTTTFLHGELEEVIYMA 812

[Close]

BLAST of Cmc11g0292251 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-23
Identity = 57/140 (40.71%), Postives = 90/140 (64.29%), Query Frame = 0


Query: 12  LTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQSQW 71
           L C A +   EP T+ EA  +     W  AM+ E+ +++   TW +   P N+K I  +W
Sbjct: 77  LVCIAKA--KEPSTYNEAKEF---LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKW 136

Query: 72  IYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDIFI 131
           +YKIK ++ G  + RYKARLVAKGYTQ++ +DF E FSP  + +S++L L+I+  ++  +
Sbjct: 137 VYKIKYNSDGTIE-RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTL 196

Query: 132 EQMDVSTSFHHGELEEVIYM 152
            Q+D+S +F +G+L+E IYM
Sbjct: 197 HQLDISNAFLNGDLDEEIYM 210

[Close]

BLAST of Cmc11g0292251 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-16
Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 10  YALTCAANSIKVEPFTFEEAIVYDSQKQWKDAMEVELFSLQNNQTWSLVPKPYNQKLIQS 69
           Y+LT    +IK EP   +  I       W  AM+ EL +L  N+TW LVP P NQ ++  
Sbjct: 16  YSLT-ITTTIKKEP---KSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGC 75

Query: 70  QWIYKIKLDTGGNSKPRYKARLVAKGYTQKKRVDFHEIFSPAVRHSSIRLNLSIAVHFDI 129
           +W++K KL + G +  R KARLVAKG+ Q++ + F E +SP VR ++IR  L++A   ++
Sbjct: 76  KWVFKTKLHSDG-TLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130

The following BLAST results are available for this feature:

BLAST of Cmc11g0292251 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066339.1	3.5e-71	100.00	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK13826.1	1.3e-65	86.09	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	1.3e-65	86.09	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	1.3e-65	86.09	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067607.1	5.9e-63	82.12	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]

BLAST of Cmc11g0292251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-25	46.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.3e-24	40.31	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.5e-19	40.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.9e-18	39.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	4.8e-15	40.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc11g0292251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLZ8	1.7e-71	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DNU1	6.2e-66	86.09	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CTV2	6.2e-66	86.09	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	6.2e-66	86.09	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7VKC2	2.9e-63	82.12	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Cmc11g0292251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.9e-23	40.71	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.4e-16	40.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 52..151 e-value: 6.7E-27 score: 94.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 20..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0292251.1	Cmc11g0292251.1	mRNA