Cmc11g0291891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0291891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Tf2-6 polyprotein
Location	CMiso1.1chr11: 7464679 .. 7465302 (-)
RNA-Seq Expression	Cmc11g0291891
Synteny	Cmc11g0291891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATAAGGATATTCCAAAGACGGCTTTTCGCACTCATGAAGGCCACTACGAATTCCTTGTTATGCCGTTCGGATTAACCAACGCCCCCGCCACTTTCCAAGCCTTAATGAACAACATCTTTAGACCATTTTTGAGAAAGTTTGTTTTGGTCTTCTTCGATGACCTCCTGATCTACAACAAGAATAAGAAAGACCATATAAAGCATATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACTCTCTTTGCCAATAAAAAAAAGTGTAACTTTGGCCAGAAGAAGATAGAATACTTGGGACATATCATATCAGGAGAAGGAGTGGAAGTAGACTCTAAGAAAATAAAGGCAGTTGCGGATTGGCCATGTCCAACAAATATAAGAGAAGTCCGAGGATTCCTTGGATTAACAGGCTACTACAGAAGATTTGTTCAACATTATGGGTCAATAGCAGCCCCATTAACTCAACTCCTCAAAAAGGGGGGGTTCAAATGGAACGAAGAAGCTGAAGAATCATTTCGAAAGTTGAAATCTGCAATGATGTCTCTACCAACATTAGCCTTACTCAACTTTACACTTCCGTTTGAAATAGAAACAGATGCATCCGGTTTTGGAGTATGA

mRNA sequence

ATGATTGATAAGGATATTCCAAAGACGGCTTTTCGCACTCATGAAGGCCACTACGAATTCCTTGTTATGCCGTTCGGATTAACCAACGCCCCCGCCACTTTCCAAGCCTTAATGAACAACATCTTTAGACCATTTTTGAGAAAGTTTGTTTTGGTCTTCTTCGATGACCTCCTGATCTACAACAAGAATAAGAAAGACCATATAAAGCATATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACTCTCTTTGCCAATAAAAAAAAGTGTAACTTTGGCCAGAAGAAGATAGAATACTTGGGACATATCATATCAGGAGAAGGAGTGGAAGTAGACTCTAAGAAAATAAAGGCAGTTGCGGATTGGCCATGTCCAACAAATATAAGAGAAGTCCGAGGATTCCTTGGATTAACAGGCTACTACAGAAGATTTGTTCAACATTATGGGTCAATAGCAGCCCCATTAACTCAACTCCTCAAAAAGGGGGGGTTCAAATGGAACGAAGAAGCTGAAGAATCATTTCGAAAGTTGAAATCTGCAATGATGTCTCTACCAACATTAGCCTTACTCAACTTTACACTTCCGTTTGAAATAGAAACAGATGCATCCGGTTTTGGAGTATGA

Coding sequence (CDS)

ATGATTGATAAGGATATTCCAAAGACGGCTTTTCGCACTCATGAAGGCCACTACGAATTCCTTGTTATGCCGTTCGGATTAACCAACGCCCCCGCCACTTTCCAAGCCTTAATGAACAACATCTTTAGACCATTTTTGAGAAAGTTTGTTTTGGTCTTCTTCGATGACCTCCTGATCTACAACAAGAATAAGAAAGACCATATAAAGCATATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACTCTCTTTGCCAATAAAAAAAAGTGTAACTTTGGCCAGAAGAAGATAGAATACTTGGGACATATCATATCAGGAGAAGGAGTGGAAGTAGACTCTAAGAAAATAAAGGCAGTTGCGGATTGGCCATGTCCAACAAATATAAGAGAAGTCCGAGGATTCCTTGGATTAACAGGCTACTACAGAAGATTTGTTCAACATTATGGGTCAATAGCAGCCCCATTAACTCAACTCCTCAAAAAGGGGGGGTTCAAATGGAACGAAGAAGCTGAAGAATCATTTCGAAAGTTGAAATCTGCAATGATGTCTCTACCAACATTAGCCTTACTCAACTTTACACTTCCGTTTGAAATAGAAACAGATGCATCCGGTTTTGGAGTATGA

Protein sequence

MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIYNKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSAMMSLPTLALLNFTLPFEIETDASGFGV

Homology

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BLAST of Cmc11g0291891 vs. NCBI nr
Match: TYK06548.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.2e-111
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 60

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIKAVA
Sbjct: 61  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 120

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 180

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 181 MMSLPTLALPNFTLPFEIETDASGFGV 207

[Close]

BLAST of Cmc11g0291891 vs. NCBI nr
Match: TYK02195.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.2e-111
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 738 MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 797

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIKAVA
Sbjct: 798 SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 857

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 858 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 917

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 918 MMSLPTLALPNFTLPFEIETDASGFGV 944

[Close]

BLAST of Cmc11g0291891 vs. NCBI nr
Match: KAA0037097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.2e-111
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 643 MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 702

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDSKKIKAVA
Sbjct: 703 SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSKKIKAVA 762

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+A+ESFRKLKSA
Sbjct: 763 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAKESFRKLKSA 822

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 823 MMSLPTLALPNFTLPFEIETDASGFGV 849

[Close]

BLAST of Cmc11g0291891 vs. NCBI nr
Match: TYK02030.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.2e-111
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 60

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIKAVA
Sbjct: 61  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 120

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 180

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 181 MMSLPTLALPNFTLPFEIETDASGFGV 207

[Close]

BLAST of Cmc11g0291891 vs. NCBI nr
Match: TYK23779.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 410.2 bits (1053), Expect = 1.0e-110
Identity = 195/207 (94.20%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 648 MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIY 707

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIK VA
Sbjct: 708 SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKVVA 767

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 768 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 827

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 828 MMSLPTLALPNFTLPFEIETDASGFGV 854

[Close]

BLAST of Cmc11g0291891 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 93/209 (44.50%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           M ++ I KTAF T  GHYE+L MPFGL NAPATFQ  MNNI RP L K  LV+ DD++I+
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           + +  +H+  I+ VF  L    L     KC F +K+  +LGHI++ +G++ +  K+KA+ 
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAE--ESFRKLK 180
            +P PT  +E+R FLGLTGYYR+F+ +Y  IA P+T  LKK      ++ E  E+F KLK
Sbjct: 431 SYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLK 490

Query: 181 SAMMSLPTLALLNFTLPFEIETDASGFGV 208
           + ++  P L L +F   F + TDAS   +
Sbjct: 491 ALIIRDPILQLPDFEKKFVLTTDASNLAL 519

[Close]

BLAST of Cmc11g0291891 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.1e-44
Identity = 86/205 (41.95%), Postives = 132/205 (64.39%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           M  + + KTAF T  GHYE+L MPFGL NAPATFQ  MN+I RP L K  LV+ DD++++
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           + +  +H++ +  VF  L K  L     KC F +++  +LGH+++ +G++ + +KI+A+ 
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGG--FKWNEEAEESFRKLK 180
            +P PT  +E++ FLGLTGYYR+F+ ++  IA P+T+ LKK       N E + +F+KLK
Sbjct: 432 KYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

Query: 181 SAMMSLPTLALLNFTLPFEIETDAS 204
             +   P L + +FT  F + TDAS
Sbjct: 492 YLISEDPILKVPDFTKKFTLTTDAS 516

[Close]

BLAST of Cmc11g0291891 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 86/219 (39.27%), Postives = 136/219 (62.10%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           M + DIPKTAF T  G YEFL +PFGL NAPA FQ ++++I R  + K   V+ DD++++
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +++   H K++  V  +L K  L  N +K +F   ++E+LG+I++ +G++ D KK++A++
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLK------------KGGFKWNE 180
           + P PT+++E++ FLG+T YYR+F+Q Y  +A PLT L +            K     +E
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDE 407

Query: 181 EAEESFRKLKSAMMSLPTLALLNFTLPFEIETDASGFGV 208
            A +SF  LKS + S   LA   FT PF + TDAS + +
Sbjct: 408 TALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAI 446

[Close]

BLAST of Cmc11g0291891 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 79/207 (38.16%), Postives = 121/207 (58.45%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           M  KD  KTAF T  G YE+ VMPFGL NAP+TF   M + FR    +FV V+ DD+LI+
Sbjct: 722 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 781

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +++ ++H KH++ V   L+   L   KKKC F  ++ E+LG+ I  + +     K  A+ 
Sbjct: 782 SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 841

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           D+P P  +++ + FLG+  YYRRF+ +   IA P+ QL      +W E+ +++  KLK+A
Sbjct: 842 DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIEKLKAA 901

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           + + P L   N    + + TDAS  G+
Sbjct: 902 LCNSPVLVPFNNKANYRLTTDASKDGI 925

[Close]

BLAST of Cmc11g0291891 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-36
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           M  KD  KTAF T  G YE+ VMPFGL NAP+TF   M + FR    +FV V+ DD+LI+
Sbjct: 696 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 755

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +++ ++H KH++ V   L+   L   KKKC F  ++ E+LG+ I  + +     K  A+ 
Sbjct: 756 SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 815

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           D+P P  +++ + FLG+  YYRRF+ +   IA P+ QL      +W E+ +++  KLK A
Sbjct: 816 DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIDKLKDA 875

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           + + P L   N    + + TDAS  G+
Sbjct: 876 LCNSPVLVPFNNKANYRLTTDASKDGI 899

[Close]

BLAST of Cmc11g0291891 vs. ExPASy TrEMBL
Match: A0A5D3BSP2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00980 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.0e-112
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 738 MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 797

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIKAVA
Sbjct: 798 SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 857

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 858 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 917

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 918 MMSLPTLALPNFTLPFEIETDASGFGV 944

[Close]

BLAST of Cmc11g0291891 vs. ExPASy TrEMBL
Match: A0A5A7T6B1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G002030 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.0e-112
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 643 MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 702

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDSKKIKAVA
Sbjct: 703 SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSKKIKAVA 762

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+A+ESFRKLKSA
Sbjct: 763 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAKESFRKLKSA 822

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 823 MMSLPTLALPNFTLPFEIETDASGFGV 849

[Close]

BLAST of Cmc11g0291891 vs. ExPASy TrEMBL
Match: A0A5D3BSD7 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00120 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.0e-112
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 60

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIKAVA
Sbjct: 61  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 120

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 180

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 181 MMSLPTLALPNFTLPFEIETDASGFGV 207

[Close]

BLAST of Cmc11g0291891 vs. ExPASy TrEMBL
Match: A0A5D3C5V5 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00040 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.0e-112
Identity = 197/207 (95.17%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 60

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIKAVA
Sbjct: 61  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 120

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 180

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 181 MMSLPTLALPNFTLPFEIETDASGFGV 207

[Close]

BLAST of Cmc11g0291891 vs. ExPASy TrEMBL
Match: A0A5D3DKH5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001060 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.0e-111
Identity = 195/207 (94.20%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDLLIY 60
           MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPFLRKFVLVFFDD+LIY
Sbjct: 648 MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIY 707

Query: 61  NKNKKDHIKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLGHIISGEGVEVDSKKIKAVA 120
           +KN+KDHI+HIEKVFLALRKH+LFANKKKCNFGQKK+EYLGHIISGEGVEVDS+KIK VA
Sbjct: 708 SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKVVA 767

Query: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSA 180
           DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE+AEESFRKLKSA
Sbjct: 768 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 827

Query: 181 MMSLPTLALLNFTLPFEIETDASGFGV 208
           MMSLPTLAL NFTLPFEIETDASGFGV
Sbjct: 828 MMSLPTLALPNFTLPFEIETDASGFGV 854

[Close]

BLAST of Cmc11g0291891 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-35
Identity = 71/131 (54.20%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 68  IKHIEKVFLALRKHTLFANKKKCNFGQKKIEYLG--HIISGEGVEVDSKKIKAVADWPCP 127
           + H+  V     +H  +AN+KKC FGQ +I YLG  HIISGEGV  D  K++A+  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 128 TNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEEAEESFRKLKSAMMSLP 187
            N  E+RGFLGLTGYYRRFV++YG I  PLT+LLKK   KW E A  +F+ LK A+ +LP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 188 TLALLNFTLPF 197
            LAL +  LPF
Sbjct: 121 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc11g0291891 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06548.1	1.2e-111	95.17	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK02195.1	1.2e-111	95.17	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037097.1	1.2e-111	95.17	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK02030.1	1.2e-111	95.17	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK23779.1	1.0e-110	94.20	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0291891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.4e-46	44.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.1e-44	41.95	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.9e-43	39.27	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	1.0e-36	38.16	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	2.3e-36	38.16	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc11g0291891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSP2	6.0e-112	95.17	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T6B1	6.0e-112	95.17	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BSD7	6.0e-112	95.17	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3C5V5	6.0e-112	95.17	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DKH5	5.0e-111	94.20	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc11g0291891 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.2e-35	54.20	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 13..104 e-value: 6.4E-21 score: 74.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..104 score: 14.14386
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 113..202 e-value: 6.8E-29 score: 101.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..104 e-value: 4.0E-40 score: 139.4
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 166..207 e-value: 3.2E-10 score: 39.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..29 e-value: 4.0E-40 score: 139.4
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 32..183
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 32..183
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..104 e-value: 8.03694E-53 score: 165.461
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0291891.1	Cmc11g0291891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding