Cmc11g0290911 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0290911
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon opus
Location	CMiso1.1chr11: 6246881 .. 6248409 (+)
RNA-Seq Expression	Cmc11g0290911
Synteny	Cmc11g0290911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATAGAGAAATAATAATAACAATAATGGTGATATTATTATTATTATAAATATCTCGTATTACGTGCCATCATCTTCTTCCTCTTTAGAAAAAAGGAACCCTAAACGTCGCCGCCTCCTTCACCACCGGCAGGCACGCACGATCTCCATCATCTCCAACCGTCGGCTGCCGCAGCGTCGATCGTCAAGCCGATCCTCGTCTCCACAAGCCGCCGACGTTTCACGTCACCCATCTTCTTGCCTTCGCTCGTGGGTCGTCCAATCTCCATCACGGTTGTCGCGCCGCCACCTCGGTCCACCGATCGTCCGTCGTTTGCTGAACCAAGTCGCCGTTGTGCAAGCGGCTGTTTCGATCAGTCCGAGCCAAGTCGTCCCAGTCGGAGCTTTGTCCAAGCCGAGCATGTAGGTGTGAGCCGCGCCTTCCAGTCGCACGATTTTGCTCCGAGCCGTACACGAACCCGCGCCCAGTCGAGGTTGAGCTTTCAGTCGTGCGCACGTGTGAGTCGCGCCCCAGCGCGCCCGCCAGCCATTCATCTAAGTCGCGCCTCCTGCATCTGAGCCACGTGCAAGTCGCCTCTTCGTGCAAGCCACCTATCCGAGCCGCCCTTCTTTTCAGCCTTGAGCCGCGAAGCCTCTTTCAAGCCGCCTAGCCTATTTTGGTCTTTTCACTTAATTTTGGTAAGTTTTTTATTGGGTTTTTGGCATACCCATCAAAGGTTATTTTTTACCCTAAATAATTTAATTATGGGCTTAATTGAATTATTTTTCGTGGTAGATCAGTTGGGAGTTGTGTTGTAGAATTTCTCTAAACCAAGGATAAATTGGGTTCGTCTTCAACTTTAGGTAAGTGGAGATAATTGGAATTTGATCCCTTATTTATTTATTAATTTTAGATTTTGGATCCACTTGTGTTTAGGATTTTCCTTGAGAAGCGTGACCGCGACTTTTAGGAAAAATATCAGTGTAACTAATTTCCAAGTAAGAGATTCTACTACTAGACCTTAGACTGAATTTAAGAGACCGCATGTATTAACGGTTATGCATTTAGGGTGGCTAAGGTGCATAAGGGATGCTGTAGATGATGGTTGATATTGTGTTTATGATGGCAACTGAAGTTATGGCTGAGGATGATGATCATTATGTTATGTTTGATTTTGATACATGCTATATTAATCACGTGAATAAGGACGTTAAGAATAATACTCAAATCATGTTATGATGCTTATGATGATATTAGACTGTGGTGTGTCTGTTAACTTTATATGATGAGTTTCTTACCCCACCTGTATCGTGGCCCTATCTATGGGGCCGCTCGCACGACTAAGGGTGTTCTTACGGGATCACTCGTACAATTTAGAGGTGTACCTACGGATCACATACACGGTTAGGGGTAGTTATTTTATGTATACGGGGCCACTCGCACGACTAGGGGTGTTCCGACGGACCACTCAGACGATTAGGGGTGTACTCTCGTATCACAGATATATTTATGGAGTGTGTACCTGCGATTACTCGCACGATTAGAGGTGT

mRNA sequence

GGATAGAGAAATAATAATAACAATAATGGTGATATTATTATTATTATAAATATCTCGTATTACGTGCCATCATCTTCTTCCTCTTTAGAAAAAAGGAACCCTAAACGTCGCCGCCTCCTTCACCACCGGCAGGCACGCACGATCTCCATCATCTCCAACCGTCGGCTGCCGCAGCGTCGATCGTCAAGCCGATCCTCGTCTCCACAAGCCGCCGACGTTTCACGTCACCCATCTTCTTGCCTTCGCTCGTGGGTCGTCCAATCTCCATCACGGTTGTCGCGCCGCCACCTCGGTCCACCGATCGTCCGTCGTTTGCTGAACCAAGTCGCCGTTGTGCAAGCGGCTGTTTCGATCAGTCCGAGCCAAGTCGTCCCAGTCGGAGCTTTGTCCAAGCCGAGCATGTAGGTGTGAGCCGCGCCTTCCAGTCGCACGATTTTGCTCCGAGCCGTACACGAACCCGCGCCCAGTCGAGGTTGAGCTTTCAGTCGTGCGCACGTGTGAGTCGCGCCCCAGCGCGCCCGCCAGCCATTCATCTAAGTCGCGCCTCCTGCATCTGAGCCACGTGCAAGTCGCCTCTTCGTGCAAGCCACCTATCCGAGCCGCCCTTCTTTTCAGCCTTGAGCCGCGAAGCCTCTTTCAAGCCGCCTAGCCTATTTTGGTCTTTTCACTTAATTTTGGTAAGTTTTTTATTGGGTTTTTGGCATACCCATCAAAGGTTATTTTTTACCCTAAATAATTTAATTATGGGCTTAATTGAATTATTTTTCGTGGTAGATCAGTTGGGAGTTGTGTTGTAGAATTTCTCTAAACCAAGGATAAATTGGGTTCGTCTTCAACTTTAGGATTTTCCTTGAGAAGCGTGACCGCGACTTTTAGGAAAAATATCAGTGTAACTAATTTCCAAGGTGGCTAAGGTGCATAAGGGATGCTGTAGATGATGGTTGATATTGTGTTTATGATGGCAACTGAAGTTATGGCTGAGGATGATGATCATTATGTTATGTTTGATTTTGATACATGCTATATTAATCACGTGAATAAGGACGTTAAGAATAATACTCAAATCATGTTATGATGCTTATGATGATATTAGACTGTGGTGTGTCTGTTAACTTTATATGATGAGTTTCTTACCCCACCTGTATCGTGGCCCTATCTATGGGGCCGCTCGCACGACTAAGGGTGTTCTTACGGGATCACTCGTACAATTTAGAGGTGTACCTACGGATCACATACACGGTTAGGGGTAGTTATTTTATGTATACGGGGCCACTCGCACGACTAGGGGTGTTCCGACGGACCACTCAGACGATTAGGGGTGTACTCTCGTATCACAGATATATTTATGGAGTGTGTACCTGCGATTACTCGCACGATTAGAGGTGT

Coding sequence (CDS)

ATGGGGCCGCTCGCACGACTAAGGGTGTTCTTACGGGATCACTCGTACAATTTAGAGGTGTACCTACGGATCACATACACGGTTAGGGGTAGTTATTTTATGTATACGGGGCCACTCGCACGACTAGGGGTGTTCCGACGGACCACTCAGACGATTAGGGGTGTACTCTCGTATCACAGATATATTTATGGAGTGTGTACCTGCGATTACTCGCACGATTAG

Protein sequence

MGPLARLRVFLRDHSYNLEVYLRITYTVRGSYFMYTGPLARLGVFRRTTQTIRGVLSYHRYIYGVCTCDYSHD

Homology

[Close]

BLAST of Cmc11g0290911 vs. NCBI nr
Match: TYK16459.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRRTT 50
          MG LARL VF RDHS++L VYLRIT TVRG  Y +Y          TGPLARLGV+ R T
Sbjct: 1  MGSLARLGVFPRDHSHDLGVYLRITCTVRGQLYCVYEVTRTTRGVPTGPLARLGVYLRIT 60

[Close]

BLAST of Cmc11g0290911 vs. NCBI nr
Match: TYK26587.1 (Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRRTT 50
          MG LARL VFLRDHS++L +YL+IT TVRG  Y +Y          TGPLARLGV+ R T
Sbjct: 1  MGSLARLGVFLRDHSHDLGMYLQITCTVRGQLYCVYEVTHTTRGIPTGPLARLGVYLRIT 60

[Close]

BLAST of Cmc11g0290911 vs. NCBI nr
Match: KAA0062393.1 (Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRR 48
          MG LARL VFLRDHS++L +YL+IT TVRG  Y +Y          TGPLARLGV+ R
Sbjct: 1  MGSLARLGVFLRDHSHDLGMYLQITCTVRGQLYCVYEVTHTTRGIPTGPLARLGVYLR 58

[Close]

BLAST of Cmc11g0290911 vs. ExPASy TrEMBL
Match: A0A5D3D1W4 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002580 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.7e-06
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRRTT 50
          MG LARL VF RDHS++L VYLRIT TVRG  Y +Y          TGPLARLGV+ R T
Sbjct: 1  MGSLARLGVFPRDHSHDLGVYLRITCTVRGQLYCVYEVTRTTRGVPTGPLARLGVYLRIT 60

[Close]

BLAST of Cmc11g0290911 vs. ExPASy TrEMBL
Match: A0A5D3DS48 (Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002160 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.7e-06
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRRTT 50
          MG LARL VFLRDHS++L +YL+IT TVRG  Y +Y          TGPLARLGV+ R T
Sbjct: 1  MGSLARLGVFLRDHSHDLGMYLQITCTVRGQLYCVYEVTHTTRGIPTGPLARLGVYLRIT 60

[Close]

BLAST of Cmc11g0290911 vs. ExPASy TrEMBL
Match: A0A5A7V2T6 (Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001710 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRR 48
          MG LARL VFLRDHS++L +YL+IT TVRG  Y +Y          TGPLARLGV+ R
Sbjct: 1  MGSLARLGVFLRDHSHDLGMYLQITCTVRGQLYCVYEVTHTTRGIPTGPLARLGVYLR 58

[Close]

BLAST of Cmc11g0290911 vs. ExPASy TrEMBL
Match: A0A5D3CC38 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00080 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1  MGPLARLRVFLRDHSYNLEVYLRITYTVRGS-YFMY----------TGPLARLGVFRRTT 50
          M  LARL VFLRDHS++L VYLRIT TVRG  Y +Y          T PLARL V+ R T
Sbjct: 1  MRSLARLGVFLRDHSHDLGVYLRITCTVRGQLYCVYGVTRTTRGVPTRPLARLRVYLRIT 60

The following BLAST results are available for this feature:

BLAST of Cmc11g0290911 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16459.1	1.6e-05	60.00	Ulp1-like peptidase [Cucumis melo var. makuwa]	[more]
TYK26587.1	1.6e-05	58.33	Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuw...	[more]
KAA0062393.1	4.6e-05	58.62	Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuw...	[more]

BLAST of Cmc11g0290911 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0290911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1W4	7.7e-06	60.00	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G0...	[more]
A0A5D3DS48	7.7e-06	58.33	Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. mak...	[more]
A0A5A7V2T6	2.2e-05	58.62	Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. mak...	[more]
A0A5D3CC38	7.2e-04	56.67	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Cmc11g0290911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0290911.1	Cmc11g0290911.1	mRNA