Cmc11g0290671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0290671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 5840647 .. 5841974 (+)
RNA-Seq Expression	Cmc11g0290671
Synteny	Cmc11g0290671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTCAAACACTCATGCAATGAAAACACGAGCAAATTCTGGAATTTTTAAACCCAGGACCTTTCTCATCACACATTCATTAATCGTTCCAACTAATCCCACAACTTACCTTGAAGCTTTCAAATACTCTGAATGGAGATCTACCATGAGTGAGGAATTCAATGCTCTTCAAGAACAAGGTACATAGTCCTTAGTACCTTGTTTTCCTTCCATGAATGTTGTTGGTTGTAAATAGGTTTTTCACACCAAATTAAATCTTGATGGTTTAGTTGTTCGTTACAAAGCTTGCTTGGTTGTAAAAGGATATCATTAGGTCGAGTGTTTTTATTTTGACAAAACATTCATCAGTACTTTTTGGGCCTCAAAATTCACTCATTCCACCACATATATTTTTGTCAACCGAGCTAAATATCTCATAGATCTCCTTGCCACCTCAGGCATGACTTAATTCTGCAAAATCTTGTCCAACACCCATGTCTACTACAATTGATCTACATACCACCACTCCACCATTTCATGATCCATCTCTTTAACGTCAGATTGTGGGCTCATTACAATTTCTCACTTTTATATAGCCTAACATTGCCTTTTTTGTAAGTTGTGTAAGTCAATTTATGCATAACCCCACTATTGTTCATTATTCTGTAGTCAAACGCATACTTAGATATCTATGTGGTGCTAAATTTCTTAGGTTTTTTTTTCTGCCAAGACAATTTGTTCTTCAAAGTCTTCTGTGACTCTGATTGGGTCGAACACTCTCGATCGATGCTCGACATCTGGACTCATTACCTTTCTTGGTGATAGTCCTATATCTGGGTCCTCCAAAAAACAGCTCACTATATCTTGCTCTTCCACTGAGGCAGAATATCGTTCTTTTGCTACTGCAACTACAGATCTTTACTAGATTCGGTAGCTTCTTCGTGATCTTTGTGTTCTTCTTCATACTCCTCTAACCTAATGGTGTGATAATATTTCTACAATATCTCTAGCTAATAATCCAATTTTCCATACTCGCACATAACATATTGAAATTGATTATCATTTTGTTCGTGAAAAGGTGGTTTGTAAAGATATCTCAGTTTGCTTTATTTCTTCTAAAGATCAACTGGTCGATCTCCTCACAAAGCCTTTATTGATGGAAAACGAGACATGTACAGTAGAAACTACCCTAATTAAAGAAATTAGGGTTTATCAAATATGTACCTTCATAGCTTCTTGATTCCTCGATATCTCCTCACAAACACGAATCTTAGACCACCATTAGTATTCACCCGCTATTCTTCGGACTTAGAACCGGGTTGTGGAACCCGATTAGGTGAAGGAATTA

mRNA sequence

TTCTCTCAAACACTCATGCAATGAAAACACGAGCAAATTCTGGAATTTTTAAACCCAGGACCTTTCTCATCACACATTCATTAATCGTTCCAACTAATCCCACAACTTACCTTGAAGCTTTCAAATACTCTGAATGGAGATCTACCATGAGTGAGGAATTCAATGCTCTTCAAGAACAAGGTTTTTTTTTCTGCCAAGACAATTTGTTCTTCAAAGTCTTCTGTGACTCTGATTGGGTCGAACACTCTCGATCGATGCTCGACATCTGGACTCATTACCTTTCTTGGTGATAGTCCTATATCTGGGTCCTCCAAAAAACAGCTCACTATATCTTGCTCTTCCACTGAGGCAGAATATCGTTCTTTTGCTACTGCAACTACAGATCTTTACTAGATTCGGTAGCTTCTTCGTGATCTTTGTGTTCTTCTTCATACTCCTCTAACCTAATGGTGTGATAATATTTCTACAATATCTCTAGCTAATAATCCAATTTTCCATACTCGCACATAACATATTGAAATTGATTATCATTTTGTTCGTGAAAAGGTGGTTTGTAAAGATATCTCAGTTTGCTTTATTTCTTCTAAAGATCAACTGGTCGATCTCCTCACAAAGCCTTTATTGATGGAAAACGAGACATGTACAGTAGAAACTACCCTAATTAAAGAAATTAGGGTTTATCAAATATGTACCTTCATAGCTTCTTGATTCCTCGATATCTCCTCACAAACACGAATCTTAGACCACCATTAGTATTCACCCGCTATTCTTCGGACTTAGAACCGGGTTGTGGAACCCGATTAGGTGAAGGAATTA

Coding sequence (CDS)

ATGAAAACACGAGCAAATTCTGGAATTTTTAAACCCAGGACCTTTCTCATCACACATTCATTAATCGTTCCAACTAATCCCACAACTTACCTTGAAGCTTTCAAATACTCTGAATGGAGATCTACCATGAGTGAGGAATTCAATGCTCTTCAAGAACAAGGTTTTTTTTTCTGCCAAGACAATTTGTTCTTCAAAGTCTTCTGTGACTCTGATTGGGTCGAACACTCTCGATCGATGCTCGACATCTGGACTCATTACCTTTCTTGGTGA

Protein sequence

MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQGFFFCQDNLFFKVFCDSDWVEHSRSMLDIWTHYLSW

Homology

[Close]

BLAST of Cmc11g0290671 vs. NCBI nr
Match: TYK08058.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
          M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 1  MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWRTAMHEEFNALQAQG 51

[Close]

BLAST of Cmc11g0290671 vs. NCBI nr
Match: KAA0066360.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00923.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
          M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 41 MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWRTAMHEEFNALQAQG 91

[Close]

BLAST of Cmc11g0290671 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1   MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
           M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 324 MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWRTPMHEEFNALQAQG 374

[Close]

BLAST of Cmc11g0290671 vs. NCBI nr
Match: KAA0032398.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96352.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-08
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
          M+TRA SGIFKP+ F IT +  +PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 38 MQTRAKSGIFKPKAFHITTT--IPT-PTSYTEASKYPEWRNAMCEEFNALQAQG 88

[Close]

BLAST of Cmc11g0290671 vs. NCBI nr
Match: TYJ96936.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQGFFFCQD 60
           M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EW++ M EEFNALQ QG +    
Sbjct: 41  MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWQTAMHEEFNALQAQGTWSLVP 100

Query: 61  NLFFKVFCDSDWV 74
            L  K      WV
Sbjct: 101 RLPSKNVVGCKWV 110

[Close]

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL
Match: A0A5A7VGR9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00920 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
          M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 41 MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWRTAMHEEFNALQAQG 91

[Close]

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL
Match: A0A5D3CA49 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002060 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
          M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 1  MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWRTAMHEEFNALQAQG 51

[Close]

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL
Match: A0A5A7SPD4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1159G00100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
          M+TRA SGIFKP+ F IT +  +PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 38 MQTRAKSGIFKPKAFHITTT--IPT-PTSYTEASKYPEWRNAMCEEFNALQAQG 88

[Close]

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1   MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQG 55
           M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EWR+ M EEFNALQ QG
Sbjct: 324 MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWRTPMHEEFNALQAQG 374

[Close]

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL
Match: A0A5D3BD76 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00410 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.7e-08
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MKTRANSGIFKPRTFLITHSLIVPTNPTTYLEAFKYSEWRSTMSEEFNALQEQGFFFCQD 60
           M+TRA SGIFKP+ F IT +L  PT PT+Y EA KY EW++ M EEFNALQ QG +    
Sbjct: 41  MQTRAKSGIFKPKAFHITTAL--PT-PTSYTEASKYPEWQTAMHEEFNALQAQGTWSLVP 100

Query: 61  NLFFKVFCDSDWV 74
            L  K      WV
Sbjct: 101 RLPSKNVVGCKWV 110

The following BLAST results are available for this feature:

BLAST of Cmc11g0290671 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08058.1	5.5e-08	66.67	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0066360.1	5.5e-08	66.67	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00923.1 putative m...	[more]
KAA0061282.1	7.1e-08	66.67	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]
KAA0032398.1	7.1e-08	64.81	putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96352.1 putative m...	[more]
TYJ96936.1	1.6e-07	53.42	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0290671 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGR9	2.6e-08	66.67	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CA49	2.6e-08	66.67	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7SPD4	3.5e-08	64.81	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UZE5	3.5e-08	66.67	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BD76	7.7e-08	53.42	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cmc11g0290671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0290671.1	Cmc11g0290671.1	mRNA