Cmc11g0289501 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0289501
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 4062248 .. 4062757 (-)
RNA-Seq Expression	Cmc11g0289501
Synteny	Cmc11g0289501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCACTGACAGCAGGACAATCAACAAAATCACAGTAAAATACAGGTTCCTTATTCCAAAAATAAATGATCTACTTGACCAACTTGGAGGAGCAGAGATTTTTTCTAAAATTGACCTAAAGAGTGGCTATCACCAGATCAGAATCAGGTCTGAAGATGAATGGAAGACAGCATTCAAAACAAATGAAGGCCTCTTTGAATGGCTTGTGATGCCATTTGGGCTCTCCAACGCTCCTATCACTTTCATGAGACTCATGATCCAAGTACTTCATCCTTTTCTTAATAAATTTGTCATTGTTTATTTTGATGATATCTTGGTTTTTAGCAGATGCCTAGAAGAGCATAATACAAATCTATACCAAGTGTTCGAAGTGTTGGCCAAAAATGAACTATACATCAACCTCAAGAAATGTACTTTTTGTGTAAAAGAAATAGCATTCTTGGGATTTATTATCAAGAAGAATCACATCCTCATGGATGAAAAGAAAGTCGAGGCAATTAGAAACTGA

mRNA sequence

ATGTGCACTGACAGCAGGACAATCAACAAAATCACAGTAAAATACAGGTTCCTTATTCCAAAAATAAATGATCTACTTGACCAACTTGGAGGAGCAGAGATTTTTTCTAAAATTGACCTAAAGAGTGGCTATCACCAGATCAGAATCAGGTCTGAAGATGAATGGAAGACAGCATTCAAAACAAATGAAGGCCTCTTTGAATGGCTTGTGATGCCATTTGGGCTCTCCAACGCTCCTATCACTTTCATGAGACTCATGATCCAAGTACTTCATCCTTTTCTTAATAAATTTGTCATTGTTTATTTTGATGATATCTTGGTTTTTAGCAGATGCCTAGAAGAGCATAATACAAATCTATACCAAGTGTTCGAAGTGTTGGCCAAAAATGAACTATACATCAACCTCAAGAAATGTACTTTTTGTGTAAAAGAAATAGCATTCTTGGGATTTATTATCAAGAAGAATCACATCCTCATGGATGAAAAGAAAGTCGAGGCAATTAGAAACTGA

Coding sequence (CDS)

ATGTGCACTGACAGCAGGACAATCAACAAAATCACAGTAAAATACAGGTTCCTTATTCCAAAAATAAATGATCTACTTGACCAACTTGGAGGAGCAGAGATTTTTTCTAAAATTGACCTAAAGAGTGGCTATCACCAGATCAGAATCAGGTCTGAAGATGAATGGAAGACAGCATTCAAAACAAATGAAGGCCTCTTTGAATGGCTTGTGATGCCATTTGGGCTCTCCAACGCTCCTATCACTTTCATGAGACTCATGATCCAAGTACTTCATCCTTTTCTTAATAAATTTGTCATTGTTTATTTTGATGATATCTTGGTTTTTAGCAGATGCCTAGAAGAGCATAATACAAATCTATACCAAGTGTTCGAAGTGTTGGCCAAAAATGAACTATACATCAACCTCAAGAAATGTACTTTTTGTGTAAAAGAAATAGCATTCTTGGGATTTATTATCAAGAAGAATCACATCCTCATGGATGAAAAGAAAGTCGAGGCAATTAGAAACTGA

Protein sequence

MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFKTNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLYQVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN

Homology

[Close]

BLAST of Cmc11g0289501 vs. NCBI nr
Match: TYK06567.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 3.9e-79
Identity = 151/169 (89.35%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSRTINKITVKYRF  P+IN+LLDQLG A IFSKIDLKSGY QIRI+  DEWKTAFK
Sbjct: 242 MCIDSRTINKITVKYRFPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIKPGDEWKTAFK 301

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLFEWLVMPFGLSNAP TFMRLM QVLH FLNKFV+VYFDDILVFSRCL+EHNT+LY
Sbjct: 302 TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLQEHNTHLY 361

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           QVFEVLAKNELYINLKKCTFCV+EIAFLGFIIKKNHILMDEKKVEAIRN
Sbjct: 362 QVFEVLAKNELYINLKKCTFCVEEIAFLGFIIKKNHILMDEKKVEAIRN 410

[Close]

BLAST of Cmc11g0289501 vs. NCBI nr
Match: KAA0051933.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 142/169 (84.02%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR IN+I VKYRF IP+INDLLDQLGGA IFSKIDL+SGY QIRIR  DEWKTAFK
Sbjct: 1   MCVDSRAINRIVVKYRFPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFK 60

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLF+WLVMPFGLSNAP TFMRLM QVLHPFLNKFVIVYFDDIL FSR L+EH+ +L 
Sbjct: 61  TNEGLFKWLVMPFGLSNAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQ 120

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           Q+FE LAKNELYINLKKC FCV+EIAFLGFII+KNHILMDEKKVEAI+N
Sbjct: 121 QLFEALAKNELYINLKKCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKN 169

[Close]

BLAST of Cmc11g0289501 vs. NCBI nr
Match: KAA0054966.1 (transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK22755.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 131/169 (77.51%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR INKITVKYRF IP+++DLLDQLGGA IFSKIDL+S YHQIRIR  DEWKTAFK
Sbjct: 726 MCVDSRAINKITVKYRFPIPRVSDLLDQLGGACIFSKIDLRSDYHQIRIRPGDEWKTAFK 785

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLFEWLVMPF LSNAP TFMRLM +VLHPFLNKF+IVYFDDILVFS+  ++H  ++ 
Sbjct: 786 TNEGLFEWLVMPFDLSNAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHID 845

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           Q+F+VL  NELY+NLKKC FC  EIAFLGFII+K+H+LMDEKKVEAI+N
Sbjct: 846 QLFQVLNHNELYVNLKKCIFCSNEIAFLGFIIRKDHVLMDEKKVEAIKN 894

[Close]

BLAST of Cmc11g0289501 vs. NCBI nr
Match: KAA0057262.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18701.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 8.9e-68
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR INKITVKYRF IP++ DLLDQLGGA IFSKIDL+SGY+QIRIR  DEWK  FK
Sbjct: 1   MCVDSRAINKITVKYRFPIPRVRDLLDQLGGACIFSKIDLRSGYYQIRIRPGDEWKITFK 60

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLFEWLVM FGLSNAP TFMRLM +VLHPFLNKF+IVYFDDILVFS+  ++H  ++ 
Sbjct: 61  TNEGLFEWLVMQFGLSNAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHID 120

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           Q+F+VL  NELY+NLKKC FC  EIAFLGFII+K+H+LMDEKKVEAI+N
Sbjct: 121 QLFQVLNHNELYVNLKKCIFCSNEIAFLGFIIRKDHVLMDEKKVEAIKN 169

[Close]

BLAST of Cmc11g0289501 vs. NCBI nr
Match: CAA7018645.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 241.9 bits (616), Expect = 4.0e-60
Identity = 111/169 (65.68%), Postives = 140/169 (82.84%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR INKIT+KYRF IP++ D+LD+L G++IFSKIDL+SGYHQIRIR  DEWKTAFK
Sbjct: 20  MCVDSRAINKITIKYRFPIPRLEDMLDELAGSKIFSKIDLRSGYHQIRIRPGDEWKTAFK 79

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           + +GL+EWLVMPFGLSNAP TFMRLM Q+L PF   FV+VYFDDIL++S+  EEH  +L 
Sbjct: 80  SKDGLYEWLVMPFGLSNAPSTFMRLMNQILRPFAGSFVVVYFDDILIYSKTKEEHLDHLK 139

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           QV +VL +N+LY+NLKKCTFC  ++ FLGF++ +  I +DE+KV AIR+
Sbjct: 140 QVLQVLQENQLYVNLKKCTFCTNKLVFLGFVVGEEGIQVDEEKVRAIRD 188

[Close]

BLAST of Cmc11g0289501 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 78/165 (47.27%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 4   DSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFKTNE 63
           D R +N+ITV  R  IP ++++L +LG    F+ IDL  G+HQI +  E   KTAF T  
Sbjct: 267 DYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKH 326

Query: 64  GLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLYQVF 123
           G +E+L MPFGL NAP TF R M  +L P LNK  +VY DDI+VFS  L+EH  +L  VF
Sbjct: 327 GHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVF 386

Query: 124 EVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIR 169
           E LAK  L + L KC F  +E  FLG ++  + I  + +K+EAI+
Sbjct: 387 EKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

[Close]

BLAST of Cmc11g0289501 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.7e-33
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 0


Query: 4   DSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFKTNE 63
           D R +N+IT+  R+ IP ++++L +LG  + F+ IDL  G+HQI +  E   KTAF T  
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 64  GLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLYQVF 123
           G +E+L MPFGL NAP TF R M  +L P LNK  +VY DDI++FS  L EH  ++  VF
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 124 EVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAI 168
             LA   L + L KC F  KE  FLG I+  + I  +  KV+AI
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAI 429

[Close]

BLAST of Cmc11g0289501 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-33
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           +C D RT+NK T+   F +P+I++LL ++G A+IF+ +DL SGYHQI +  +D +KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           T  G +E+ VMPFGL NAP TF R M         +FV VY DDIL+FS   EEH  +L 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
            V E L    L +  KKC F  +E  FLG+ I    I   + K  AIR+
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRD 814

[Close]

BLAST of Cmc11g0289501 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-33
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           +C D RT+NK T+   F +P+I++LL ++G A+IF+ +DL SGYHQI +  +D +KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           T  G +E+ VMPFGL NAP TF R M         +FV VY DDIL+FS   EEH  +L 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
            V E L    L +  KKC F  +E  FLG+ I    I   + K  AIR+
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRD 840

[Close]

BLAST of Cmc11g0289501 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-29
Identity = 70/167 (41.92%), Postives = 98/167 (58.68%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           M  D + +N +T+   + IP IN  L  LG A+ F+ +DL SG+HQI ++  D  KTAF 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           T  G +E+L +PFGL NAP  F R++  +L   + K   VY DDI+VFS   + H  NL 
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAI 168
            V   L+K  L +NL+K  F   ++ FLG+I+  + I  D KKV AI
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAI 346

[Close]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL
Match: A0A5D3C402 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00280 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.9e-79
Identity = 151/169 (89.35%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSRTINKITVKYRF  P+IN+LLDQLG A IFSKIDLKSGY QIRI+  DEWKTAFK
Sbjct: 242 MCIDSRTINKITVKYRFPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIKPGDEWKTAFK 301

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLFEWLVMPFGLSNAP TFMRLM QVLH FLNKFV+VYFDDILVFSRCL+EHNT+LY
Sbjct: 302 TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLQEHNTHLY 361

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           QVFEVLAKNELYINLKKCTFCV+EIAFLGFIIKKNHILMDEKKVEAIRN
Sbjct: 362 QVFEVLAKNELYINLKKCTFCVEEIAFLGFIIKKNHILMDEKKVEAIRN 410

[Close]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL
Match: A0A5D3CPI6 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00330 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.3e-74
Identity = 142/169 (84.02%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR IN+I VKYRF IP+INDLLDQLGGA IFSKIDL+SGY QIRIR  DEWKTAFK
Sbjct: 1   MCVDSRAINRIVVKYRFPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFK 60

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLF+WLVMPFGLSNAP TFMRLM QVLHPFLNKFVIVYFDDIL FSR L+EH+ +L 
Sbjct: 61  TNEGLFKWLVMPFGLSNAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQ 120

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           Q+FE LAKNELYINLKKC FCV+EIAFLGFII+KNHILMDEKKVEAI+N
Sbjct: 121 QLFEALAKNELYINLKKCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKN 169

[Close]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL
Match: A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-69
Identity = 131/169 (77.51%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR INKITVKYRF IP+++DLLDQLGGA IFSKIDL+S YHQIRIR  DEWKTAFK
Sbjct: 726 MCVDSRAINKITVKYRFPIPRVSDLLDQLGGACIFSKIDLRSDYHQIRIRPGDEWKTAFK 785

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLFEWLVMPF LSNAP TFMRLM +VLHPFLNKF+IVYFDDILVFS+  ++H  ++ 
Sbjct: 786 TNEGLFEWLVMPFDLSNAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHID 845

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           Q+F+VL  NELY+NLKKC FC  EIAFLGFII+K+H+LMDEKKVEAI+N
Sbjct: 846 QLFQVLNHNELYVNLKKCIFCSNEIAFLGFIIRKDHVLMDEKKVEAIKN 894

[Close]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL
Match: A0A5D3D575 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00010 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.3e-68
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR INKITVKYRF IP++ DLLDQLGGA IFSKIDL+SGY+QIRIR  DEWK  FK
Sbjct: 1   MCVDSRAINKITVKYRFPIPRVRDLLDQLGGACIFSKIDLRSGYYQIRIRPGDEWKITFK 60

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           TNEGLFEWLVM FGLSNAP TFMRLM +VLHPFLNKF+IVYFDDILVFS+  ++H  ++ 
Sbjct: 61  TNEGLFEWLVMQFGLSNAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHID 120

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           Q+F+VL  NELY+NLKKC FC  EIAFLGFII+K+H+LMDEKKVEAI+N
Sbjct: 121 QLFQVLNHNELYVNLKKCIFCSNEIAFLGFIIRKDHVLMDEKKVEAIKN 169

[Close]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL
Match: A0A6D2HS27 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS4046 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.9e-60
Identity = 111/169 (65.68%), Postives = 140/169 (82.84%), Query Frame = 0


Query: 1   MCTDSRTINKITVKYRFLIPKINDLLDQLGGAEIFSKIDLKSGYHQIRIRSEDEWKTAFK 60
           MC DSR INKIT+KYRF IP++ D+LD+L G++IFSKIDL+SGYHQIRIR  DEWKTAFK
Sbjct: 20  MCVDSRAINKITIKYRFPIPRLEDMLDELAGSKIFSKIDLRSGYHQIRIRPGDEWKTAFK 79

Query: 61  TNEGLFEWLVMPFGLSNAPITFMRLMIQVLHPFLNKFVIVYFDDILVFSRCLEEHNTNLY 120
           + +GL+EWLVMPFGLSNAP TFMRLM Q+L PF   FV+VYFDDIL++S+  EEH  +L 
Sbjct: 80  SKDGLYEWLVMPFGLSNAPSTFMRLMNQILRPFAGSFVVVYFDDILIYSKTKEEHLDHLK 139

Query: 121 QVFEVLAKNELYINLKKCTFCVKEIAFLGFIIKKNHILMDEKKVEAIRN 170
           QV +VL +N+LY+NLKKCTFC  ++ FLGF++ +  I +DE+KV AIR+
Sbjct: 140 QVLQVLQENQLYVNLKKCTFCTNKLVFLGFVVGEEGIQVDEEKVRAIRD 188

The following BLAST results are available for this feature:

BLAST of Cmc11g0289501 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06567.1	3.9e-79	89.35	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0051933.1	1.1e-73	84.02	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag...	[more]
KAA0054966.1	4.7e-69	77.51	transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0057262.1	8.9e-68	76.33	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18701.1 putative gag...	[more]
CAA7018645.1	4.0e-60	65.68	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of Cmc11g0289501 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.3e-34	47.27	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.7e-33	45.73	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	7.4e-33	45.56	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	7.4e-33	45.56	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	1.0e-29	41.92	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C402	1.9e-79	89.35	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CPI6	5.3e-74	84.02	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3DGR0	2.3e-69	77.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3D575	4.3e-68	76.33	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6D2HS27	1.9e-60	65.68	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS4046 P...	[more]

BLAST of Cmc11g0289501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..152 e-value: 7.5E-30 score: 104.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..152 score: 12.995916
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..77 e-value: 1.6E-63 score: 215.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..169
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..169
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..152 e-value: 5.5368E-75 score: 220.16
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 17..152 e-value: 1.6E-63 score: 215.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0289501.1	Cmc11g0289501.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding