Cmc11g0289091 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0289091
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 3596503 .. 3596823 (+)
RNA-Seq Expression	Cmc11g0289091
Synteny	Cmc11g0289091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGTTCTCGAAATGCGAGTTTTGCTGAAGCAGGTGTCCTTTCTGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTCCGTAGCTTTCTGGGTTTAGCGGGCTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCGCCGGTTCTTACTACCTGA

mRNA sequence

ATGCAAAGTTCTCGAAATGCGAGTTTTGCTGAAGCAGGTGTCCTTTCTGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTCCGTAGCTTTCTGGGTTTAGCGGGCTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCGCCGGTTCTTACTACCTGA

Coding sequence (CDS)

ATGCAAAGTTCTCGAAATGCGAGTTTTGCTGAAGCAGGTGTCCTTTCTGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTCCGTAGCTTTCTGGGTTTAGCGGGCTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCGCCGGTTCTTACTACCTGA

Protein sequence

MQSSRNASFAEAGVLSGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTT

Homology

[Close]

BLAST of Cmc11g0289091 vs. NCBI nr
Match: KAA0058399.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 9.0e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 17   GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
            GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 1003 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 1062

Query: 77   KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
            KGAPFVWSKACEDSFQTLKQKLVTAPVLT
Sbjct: 1063 KGAPFVWSKACEDSFQTLKQKLVTAPVLT 1091

[Close]

BLAST of Cmc11g0289091 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 180.3 bits (456), Expect = 9.0e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 193 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 252

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
           KGAPFVWSKACEDSFQTLKQKLVTAPVLT
Sbjct: 253 KGAPFVWSKACEDSFQTLKQKLVTAPVLT 281

[Close]

BLAST of Cmc11g0289091 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 9.0e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 17   GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
            GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 1026 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 1085

Query: 77   KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
            KGAPFVWSKACEDSFQTLKQKLVTAPVLT
Sbjct: 1086 KGAPFVWSKACEDSFQTLKQKLVTAPVLT 1114

[Close]

BLAST of Cmc11g0289091 vs. NCBI nr
Match: KAA0056300.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 472 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 531

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
           KGAPFVWSKACEDSFQ LKQKLVTAPVLT
Sbjct: 532 KGAPFVWSKACEDSFQNLKQKLVTAPVLT 560

[Close]

BLAST of Cmc11g0289091 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 341 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 400

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
           KGAPFVWSKACEDSFQ LKQKLVTAPVLT
Sbjct: 401 KGAPFVWSKACEDSFQNLKQKLVTAPVLT 429

[Close]

BLAST of Cmc11g0289091 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-18
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 18  HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK 77
           H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

Query: 78  GAPFVWSKACEDSFQTLKQKLVTAPVL 105
            +   W++    +F+ LK  + T PVL
Sbjct: 97  NS-LKWTEMAALAFKALKGAVTTLPVL 122

[Close]

BLAST of Cmc11g0289091 vs. ExPASy Swiss-Prot
Match: P31792 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.7e-12
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           G+++S+    + P +IE V     P    EVR FLG AG+ R ++  F+ +A PL  LT+
Sbjct: 245 GYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTK 304

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVL 105
           + APF W +  + +F+ LK+ L++AP L
Sbjct: 305 ESAPFTWQEKHQSAFEALKEALLSAPAL 332

[Close]

BLAST of Cmc11g0289091 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GH+V+  G+  +P K++A+  +  P+   E+R+FLGL GYYR+F+ N++ IA P+T   +
Sbjct: 411 GHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLK 470

Query: 77  KGAPFVWSK-ACEDSFQTLKQKLVTAPVL 105
           K       K    ++F+ LK  ++  P+L
Sbjct: 471 KRTKIDTQKLEYIEAFEKLKALIIRDPIL 499

[Close]

BLAST of Cmc11g0289091 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.5e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHV++  G+  +P KIEA+  +  P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +
Sbjct: 412 GHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLK 471

Query: 77  KGAPFVWSKACEDS-FQTLKQKLVTAPVL 105
           K      +    DS F+ LK  +   P+L
Sbjct: 472 KNMKIDTTNPEYDSAFKKLKYLISEDPIL 500

[Close]

BLAST of Cmc11g0289091 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           G++V+  G+  DP K+ A++    P++V E++ FLG+  YYR+F+++++++A PLT LTR
Sbjct: 328 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

Query: 77  -----------KGAPFVWSKACEDSFQTLKQKLVTAPVL 105
                         P    +    SF  LK  L ++ +L
Sbjct: 388 GLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEIL 426

[Close]

BLAST of Cmc11g0289091 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 17   GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
            GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 1026 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 1085

Query: 77   KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
            KGAPFVWSKACEDSFQTLKQKLVTAPVLT
Sbjct: 1086 KGAPFVWSKACEDSFQTLKQKLVTAPVLT 1114

[Close]

BLAST of Cmc11g0289091 vs. ExPASy TrEMBL
Match: A0A5A7UY04 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 17   GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
            GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 1003 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 1062

Query: 77   KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
            KGAPFVWSKACEDSFQTLKQKLVTAPVLT
Sbjct: 1063 KGAPFVWSKACEDSFQTLKQKLVTAPVLT 1091

[Close]

BLAST of Cmc11g0289091 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 193 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 252

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
           KGAPFVWSKACEDSFQTLKQKLVTAPVLT
Sbjct: 253 KGAPFVWSKACEDSFQTLKQKLVTAPVLT 281

[Close]

BLAST of Cmc11g0289091 vs. ExPASy TrEMBL
Match: A0A5A7TW75 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00130 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 314 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 373

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
           KGAPFVWSKACEDSFQ LKQKLVTAPVLT
Sbjct: 374 KGAPFVWSKACEDSFQNLKQKLVTAPVLT 402

[Close]

BLAST of Cmc11g0289091 vs. ExPASy TrEMBL
Match: A0A5A7TQ36 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001110 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 17  GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 76
           GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR
Sbjct: 310 GHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR 369

Query: 77  KGAPFVWSKACEDSFQTLKQKLVTAPVLT 106
           KGAPFVWSKACEDSFQ LKQKLVTAPVLT
Sbjct: 370 KGAPFVWSKACEDSFQNLKQKLVTAPVLT 398

[Close]

BLAST of Cmc11g0289091 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 18  HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRK 77
           H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

Query: 78  GAPFVWSKACEDSFQTLKQKLVTAPVL 105
            +   W++    +F+ LK  + T PVL
Sbjct: 97  NS-LKWTEMAALAFKALKGAVTTLPVL 122

The following BLAST results are available for this feature:

BLAST of Cmc11g0289091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058399.1	9.0e-42	100.00	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	9.0e-42	100.00	pol protein [Cucumis melo subsp. melo]	[more]
TYK01613.1	9.0e-42	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056300.1	3.4e-41	98.88	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	3.4e-41	98.88	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0289091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92523	2.5e-18	48.28	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P31792	7.7e-12	37.50	Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 ...	[more]
P20825	6.5e-11	34.83	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	8.5e-11	38.20	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.5e-10	31.31	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc11g0289091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPI1	4.4e-42	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UY04	4.4e-42	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]
Q84KB0	4.4e-42	100.00	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7TW75	1.7e-41	98.88	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00130 P...	[more]
A0A5A7TQ36	1.7e-41	98.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32...	[more]

BLAST of Cmc11g0289091 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.8e-19	48.28	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..106 e-value: 5.3E-31 score: 108.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 16..102
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 16..102
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 17..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0289091.1	Cmc11g0289091.1	mRNA