Cmc11g0289071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0289071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 3589951 .. 3590880 (+)
RNA-Seq Expression	Cmc11g0289071
Synteny	Cmc11g0289071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTATGTATTGACTACAGGGAGTTTAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATATGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTTTGGTCGGGATATCATCATCTGAGGATTAAGGATAGCGATGTACCGAAGACAGCCTTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTATTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGACCGAGCATGAGGAGCATTTACGTATGGTCCTAGAAACTCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCCGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTTGGTTTAACGGGTTATTACCGACGATTTGTGGAGAACATTTCCCGTATAACTACTCCTCTTACCCAGTTGACTAGGGAGGGAGCTCCTTTTGTTTGGAGTAAAGCCTGTGAAGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGAAGTTTTGTGATTCACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTTTGATGCAGCAAGGTAAGGTGGTCGCTTATGCCTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACACGATTTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATATAG

mRNA sequence

ATGCGCCTATGTATTGACTACAGGGAGTTTAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATATGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTTTGGTCGGGATATCATCATCTGAGGATTAAGGATAGCGATGTACCGAAGACAGCCTTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTATTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGACCGAGCATGAGGAGCATTTACGTATGGTCCTAGAAACTCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCCGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTTGGTTTAACGGGTTATTACCGACGATTTGTGGAGAACATTTCCCGTATAACTACTCCTCTTACCCAGTTGACTAGGGAGGGAGCTCCTTTTGTTTGGAGTAAAGCCTGTGAAGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGAAGTTTTGTGATTCACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTTTGATGCAGCAAGGTAAGGTGGTCGCTTATGCCTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACACGATTTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATATAG

Coding sequence (CDS)

ATGCGCCTATGTATTGACTACAGGGAGTTTAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATATGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATCGACCTTTGGTCGGGATATCATCATCTGAGGATTAAGGATAGCGATGTACCGAAGACAGCCTTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTATTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGACCGAGCATGAGGAGCATTTACGTATGGTCCTAGAAACTCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCCGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGTTTTCTTGGTTTAACGGGTTATTACCGACGATTTGTGGAGAACATTTCCCGTATAACTACTCCTCTTACCCAGTTGACTAGGGAGGGAGCTCCTTTTGTTTGGAGTAAAGCCTGTGAAGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGAAGTTTTGTGATTCACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTTTGATGCAGCAAGGTAAGGTGGTCGCTTATGCCTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACACGATTTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATATAG

Protein sequence

MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKI

Homology

[Close]

BLAST of Cmc11g0289071 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 598.2 bits (1541), Expect = 4.0e-167
Identity = 293/309 (94.82%), Postives = 298/309 (96.44%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 622 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 682 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 742 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAPVLTV
Sbjct: 802 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 861

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 862 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 921

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 922 RHYLYGEKI 930

[Close]

BLAST of Cmc11g0289071 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 596.7 bits (1537), Expect = 1.2e-166
Identity = 292/309 (94.50%), Postives = 298/309 (96.44%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LR+VL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAPVLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 490

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 491 RHYLYGEKI 499

[Close]

BLAST of Cmc11g0289071 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 596.3 bits (1536), Expect = 1.5e-166
Identity = 291/309 (94.17%), Postives = 299/309 (96.76%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIK+ DVPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAP+LTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTV 240

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDAS+KGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 241 PDGSGSFVIYSDASRKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 301 RHYLYGEKI 309

[Close]

BLAST of Cmc11g0289071 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 595.9 bits (1535), Expect = 2.0e-166
Identity = 292/309 (94.50%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1    MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
            MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 876  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 935

Query: 61   FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
            FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 936  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 995

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 996  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1055

Query: 181  VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQ LKQKLVTAPVLTV
Sbjct: 1056 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTV 1115

Query: 241  PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
            PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 1116 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 1175

Query: 301  RHYLYGEKI 310
            RHYLYGEKI
Sbjct: 1176 RHYLYGEKI 1184

[Close]

BLAST of Cmc11g0289071 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 595.9 bits (1535), Expect = 2.0e-166
Identity = 292/309 (94.50%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 656 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 715

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 716 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEH 775

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVL+TLR NKLYAKF KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 776 LRMVLQTLRDNKLYAKFLKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 835

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAPVLTV
Sbjct: 836 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 895

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 896 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 955

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 956 RHYLYGEKI 964

[Close]

BLAST of Cmc11g0289071 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.0e-68
Identity = 121/308 (39.29%), Postives = 191/308 (62.01%), Query Frame = 0


Query: 2   RLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTAF 61
           R+ IDYR+ N++T+ ++YP+P +D++  +L     F+ IDL  G+H + + +  + KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEHL 121
            ++ GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S + TEH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 RMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
           ++V   L    L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSK-ACEDSFQNLKQKLVTAPVLTV 241
           R+FLGLTGYYR+F+ N + I  P+T   ++       K    ++F+ LK  ++  P+L +
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQL 501

Query: 242 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 301
           PD    FV+ +DAS   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +
Sbjct: 502 PDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTF 561

Query: 302 RHYLYGEK 309
           RHYL G +
Sbjct: 562 RHYLLGRQ 569

[Close]

BLAST of Cmc11g0289071 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.7e-67
Identity = 124/306 (40.52%), Postives = 190/306 (62.09%), Query Frame = 0


Query: 2   RLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTAF 61
           R+ IDYR+ N++TV +++P+P +D++  +L     F+ IDL  G+H + +    V KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEHL 121
            +++GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 RMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
            +V E L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDS-FQNLKQKLVTAPVLTV 241
           ++FLGLTGYYR+F+ N + I  P+T+  ++      +    DS F+ LK  +   P+L V
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKV 502

Query: 242 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 301
           PD +  F + +DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +
Sbjct: 503 PDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTF 562

Query: 302 RHYLYG 307
           RHYL G
Sbjct: 563 RHYLLG 568

[Close]

BLAST of Cmc11g0289071 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.5e-60
Identity = 116/320 (36.25%), Postives = 187/320 (58.44%), Query Frame = 0


Query: 2   RLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTAF 61
           R+ +D++  N VT+ + YP+P I+     L  A  F+ +DL SG+H + +K+SD+PKTAF
Sbjct: 179 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

Query: 62  RSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEHL 121
            +  G YEF+ + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++L
Sbjct: 239 STLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNL 298

Query: 122 RMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEV 181
           R+VL +L    L     K  F   QV FLG++V+  G+  DP K+ A++  P P++V E+
Sbjct: 299 RLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358

Query: 182 RSFLGLTGYYRRFVENISRITTPLTQLTR-----------EGAPFVWSKACEDSFQNLKQ 241
           + FLG+T YYR+F+++ +++  PLT LTR              P    +    SF +LK 
Sbjct: 359 KRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKS 418

Query: 242 KLVTAPVLTVPDGSGSFVIHSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYPTH 301
            L ++ +L  P  +  F + +DAS   +G VL Q    + + +AY SR L   E+NY T 
Sbjct: 419 ILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATI 478

Query: 302 DLELAAVVFALKIWRHYLYG 307
           + E+ A++++L   R YLYG
Sbjct: 479 EKEMLAIIWSLDNLRAYLYG 498

[Close]

BLAST of Cmc11g0289071 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-59
Identity = 114/309 (36.89%), Postives = 183/309 (59.22%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           +R+ +DY+  NK    N YPLP I+ +  ++QG+T+F+K+DL S YH +R++  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           ++ VL+ L+   L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           +R FLG   Y R+F+   S++T PL  L ++   + W+     + +N+KQ LV+ PVL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVF 300
            D S   ++ +DAS   +G VL Q+        V Y S ++   + NY   D E+ A++ 
Sbjct: 702 FDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIK 761

Query: 301 ALKIWRHYL 305
           +LK WRHYL
Sbjct: 762 SLKHWRHYL 770

[Close]

BLAST of Cmc11g0289071 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-59
Identity = 114/309 (36.89%), Postives = 183/309 (59.22%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           +R+ +DY+  NK    N YPLP I+ +  ++QG+T+F+K+DL S YH +R++  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           ++ VL+ L+   L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           +R FLG   Y R+F+   S++T PL  L ++   + W+     + +N+KQ LV+ PVL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVF 300
            D S   ++ +DAS   +G VL Q+        V Y S ++   + NY   D E+ A++ 
Sbjct: 702 FDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIK 761

Query: 301 ALKIWRHYL 305
           +LK WRHYL
Sbjct: 762 SLKHWRHYL 770

[Close]

BLAST of Cmc11g0289071 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 2.0e-167
Identity = 293/309 (94.82%), Postives = 298/309 (96.44%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 622 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 682 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 742 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAPVLTV
Sbjct: 802 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 861

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 862 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 921

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 922 RHYLYGEKI 930

[Close]

BLAST of Cmc11g0289071 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 5.7e-167
Identity = 292/309 (94.50%), Postives = 298/309 (96.44%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LR+VL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAPVLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 490

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 491 RHYLYGEKI 499

[Close]

BLAST of Cmc11g0289071 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 7.4e-167
Identity = 291/309 (94.17%), Postives = 299/309 (96.76%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIK+ DVPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAP+LTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTV 240

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDAS+KGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 241 PDGSGSFVIYSDASRKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 301 RHYLYGEKI 309

[Close]

BLAST of Cmc11g0289071 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 9.7e-167
Identity = 292/309 (94.50%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1   MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
           MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 656 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 715

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 716 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEH 775

Query: 121 LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
           LRMVL+TLR NKLYAKF KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 776 LRMVLQTLRDNKLYAKFLKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 835

Query: 181 VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
           VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQNLKQKLVTAPVLTV
Sbjct: 836 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 895

Query: 241 PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
           PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 896 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 955

Query: 301 RHYLYGEKI 310
           RHYLYGEKI
Sbjct: 956 RHYLYGEKI 964

[Close]

BLAST of Cmc11g0289071 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 9.7e-167
Identity = 292/309 (94.50%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1    MRLCIDYREFNKVTVKNKYPLPRIDDMFDQLQGATVFSKIDLWSGYHHLRIKDSDVPKTA 60
            MRLCIDYRE NKVTVKN+YPLPRIDD+FDQLQGATVFSKIDL SGYH LRIKD DVPKTA
Sbjct: 876  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 935

Query: 61   FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTETEHEEH 120
            FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 936  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 995

Query: 121  LRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSE 180
            LRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSE
Sbjct: 996  LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1055

Query: 181  VRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240
            VRSFLGL GYYRRFVEN SRI TPLTQLTR+GAPFVWSKACEDSFQ LKQKLVTAPVLTV
Sbjct: 1056 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTV 1115

Query: 241  PDGSGSFVIHSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 300
            PDGSGSFVI+SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW
Sbjct: 1116 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 1175

Query: 301  RHYLYGEKI 310
            RHYLYGEKI
Sbjct: 1176 RHYLYGEKI 1184

[Close]

BLAST of Cmc11g0289071 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 3.0e-27
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 120 HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPST 179
           HL MVL+    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLTGYYRRFVENISRITTPLTQLTREGAPFVWSKACEDSFQNLKQKLVTAPV 239
            +E+R FLGLTGYYRRFV+N  +I  PLT+L ++ +   W++    +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 240 LTVPDGSGSFV 249
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc11g0289071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048687.1	4.0e-167	94.82	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	1.2e-166	94.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0042119.1	1.5e-166	94.17	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	2.0e-166	94.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037244.1	2.0e-166	94.50	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0289071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.0e-68	39.29	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.7e-67	40.52	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.5e-60	36.25	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	1.3e-59	36.89	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.3e-59	36.89	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0289071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U330	2.0e-167	94.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7SPZ2	5.7e-167	94.50	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE...	[more]
A0A5A7TLA3	7.4e-167	94.17	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7T190	9.7e-167	94.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5D3BPI1	9.7e-167	94.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc11g0289071 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.0e-27	45.04	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 2.7E-66 score: 224.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..307
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..307
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 1.07111E-79 score: 237.879
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 2.7E-66 score: 224.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..254 e-value: 8.7E-31 score: 107.8
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 217..309 e-value: 4.0E-32 score: 110.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 1.4E-25 score: 90.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 10.064559
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0289071.1	Cmc11g0289071.1	mRNA