Cmc11g0288941 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0288941
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr11: 3390248 .. 3392086 (-)
RNA-Seq ExpressionCmc11g0288941
SyntenyCmc11g0288941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCAATCACCATCTGCAACTTCATCATCGTCTTCTTCAGCATGACCAGCACCCACATTATCGAGCCCACCTTCAAATATTCCTTTCATGACTCTCAGAAGTGGCCAATCACCACCGCACATGACTGGAGTAGGAGGCAAGAGAAGGGATGCGGTCTTGCCTTCTGGTAAAGATGGAATGTCATCTCCCAATTCAGCAGCTAGCCTTTCAGCTACATCATGTAAACCATGGGTAGAAGCTGTGATGTACGCAAGAGGTAAGTGGCCAACATTCTCCAGGATCTTTACGCGCTCACGAACATCACCAAGATATAGAGCATTGTGAAATTGACCCATGACATCATTCTTAACTTCAGCGATCTTTAACATCTTGGATAGTTTTGCTGTGTTGCCAGTTATGAGATAAAGGAACGATAACCTCTCAAAATTTTTTGTCTTCTGGTAGGCATATTCGACTATGCCTGCATTGCCTTGCCGAAGAGCCTCCACACCCAGCCTATACCAATGATCTTTTTCATCGATTGCTGTAGCAGATGCAACTGCAATCTGAATATTTCCACTCTCAAGAGCCAAATTGAACCTGGTTCTCTCATCCTTCACGAAGTGAAGTGCAACTTCTGGAAATCCCTTTTGTTGCAAATATGCAATCATTGCTTGCCCACAGAGCTGTGAGTTCCTTATCATGCTCATGACATGGTCAAATCTCTTCTTCAAGAGAGAAAGTTTGAATATGTATTCTGTTGCATCAATAATTAACGATCGAACTGTTCCATCCCTATCCAAGCAAAAAAGAGTATTGCCAGACACCTTTGTAATATATATTGGAACATCGAGGGTTCTGATTATACCACTATCTCCATTCGGGAGGCAATACTTAATGTGGTTTAGGGTTGTGTAAATAAAAACGCCATTATCATCCCATGCTCCACTCTTTACGCGAATTGTTTCATGAAGTGTGCACTGGTGAACAAGCTTCTTGTTAGCAATAATAATTGCATGTTTGCTCAGCAATGCTACACTCTCCATATCATTGGACCAAACAACGTACTTGACAAAAGGGGTTTGAAGATCACCAAGAATTATTCTCTGTTGAAGATCGTAAATAACAACTCTATCTTCTGCTCGGCACAATAAATTACCAGTTCCAGCATAAAATATTGCATCTGCAGTAATGGGAATAGGGACCTTCTTAACAATTTCATTCTTAAGGTTTTTTAACAAGACTTGGTTGTGACTTTTATCGAGCACAGCAAACCTATTCCGAGCTACAAACACTGCTGATCCTCCAAGTCCTCTCTTTGCATCTTGCAAGCTATCACTTCTACCAAAGCTATCCTTGGGTATGGTGTAAAATTCATAACACCCCCCATCCAGATCTGAGCAAACTAGAATTGTGTTTTCCGTAGGGCTAAATGAAAGGGTTCTTGGGCTCTGATTCAAGCTAGTTGAACCAGGCCGGCGAATCGGAACGACCTGTGTATCTTTTTGAGTGGAGAACTCATAATAGCGCAAAAAGCGGTCCTTCACATAAAATAAAGAATCACCACTAATAGCAAAGGCTGGTCTTTCTCTCTCCAACTTAAAGACAATCATGCCACTGTCATGCCCTGCTGCCAATAAATTCATCTCCGGATGAGCAGAAAGAATCCAAAATCTATCATGCTCCCTACGAAATGTCTGAAGTCCAGTTCGTTTTGTAGCATCCCAAATTCGAATACTTTTATCCTCTGAATTGGAAACAATAATATCTTGTTTCGCATGGAACATCACACATGAAACATTATTCATGTGCCCCCTTAGAGTGTCCACTTCCCATGCTTTTGTGTCTGCAACAAAAATG

mRNA sequence

CCCCAATCACCATCTGCAACTTCATCATCGTCTTCTTCAGCATGACCAGCACCCACATTATCGAGCCCACCTTCAAATATTCCTTTCATGACTCTCAGAAGTGGCCAATCACCACCGCACATGACTGGAGTAGGAGGCAAGAGAAGGGATGCGGTCTTGCCTTCTGGTAAAGATGGAATGTCATCTCCCAATTCAGCAGCTAGCCTTTCAGCTACATCATGTAAACCATGGGTAGAAGCTGTGATGTACGCAAGAGGCATATTCGACTATGCCTGCATTGCCTTGCCGAAGAGCCTCCACACCCAGCCTATACCAATGATCTTTTTCATCGATTGCTGTAGCAGATGCAACTGCAATCTGAATATTTCCACTCTCAAGAGCCAAATTGAACCTGGTTCTCTCATCCTTCACGAAGTGAAGTGCAACTTCTGGAAATCCCTTTTGTTGCAAATATGCAATCATTGCTTGCCCACAGAGCTGTGAGTTCCTTATCATGCTCATGACATGGTCAAATCTCTTCTTCAAGAGAGAAAGTTTGAATATGTATTCTGTTGCATCAATAATTAACGATCGAACTGTTCCATCCCTATCCAAGCAAAAAAGAGTATTGCCAGACACCTTTGTAATATATATTGGAACATCGAGGGTTCTGATTATACCACTATCTCCATTCGGGAGGCAATACTTAATGTGGTTTAGGGTTGTGTAAATAAAAACGCCATTATCATCCCATGCTCCACTCTTTACGCGAATTGTTTCATGAAGTGTGCACTGGTGAACAAGCTTCTTGTTAGCAATAATAATTGCATGTTTGCTCAGCAATGCTACACTCTCCATATCATTGGACCAAACAACGTACTTGACAAAAGGGGTTTGAAGATCACCAAGAATTATTCTCTGTTGAAGATCGTAAATAACAACTCTATCTTCTGCTCGGCACAATAAATTACCAGTTCCAGCATAAAATATTGCATCTGCAGTAATGGGAATAGGGACCTTCTTAACAATTTCATTCTTAAGGTTTTTTAACAAGACTTGGTTGTGACTTTTATCGAGCACAGCAAACCTATTCCGAGCTACAAACACTGCTGATCCTCCAAGTCCTCTCTTTGCATCTTGCAAGCTATCACTTCTACCAAAGCTATCCTTGGGTATGGTGTAAAATTCATAACACCCCCCATCCAGATCTGAGCAAACTAGAATTGTGTTTTCCGTAGGGCTAAATGAAAGGGTTCTTGGGCTCTGATTCAAGCTAGTTGAACCAGGCCGGCGAATCGGAACGACCTGTGTATCTTTTTGAGTGGAGAACTCATAATAGCGCAAAAAGCGGTCCTTCACATAAAATAAAGAATCACCACTAATAGCAAAGGCTGGTCTTTCTCTCTCCAACTTAAAGACAATCATGCCACTGTCATGCCCTGCTGCCAATAAATTCATCTCCGGATGAGCAGAAAGAATCCAAAATCTATCATGCTCCCTACGAAATGTCTGAAGTCCAGTTCGTTTTGTAGCATCCCAAATTCGAATACTTTTATCCTCTGAATTGGAAACAATAATATCTTGTTTCGCATGGAACATCACACATGAAACATTATTCATGTGCCCCCTTAGAGTGTCCACTTCCCATGCTTTTGTGTCTGCAACAAAAATG

Coding sequence (CDS)

ATGACTCTCAGAAGTGGCCAATCACCACCGCACATGACTGGAGTAGGAGGCAAGAGAAGGGATGCGGTCTTGCCTTCTGGTAAAGATGGAATGTCATCTCCCAATTCAGCAGCTAGCCTTTCAGCTACATCATGTAAACCATGGGTAGAAGCTGTGATGTACGCAAGAGGCATATTCGACTATGCCTGCATTGCCTTGCCGAAGAGCCTCCACACCCAGCCTATACCAATGATCTTTTTCATCGATTGCTGTAGCAGATGCAACTGCAATCTGAATATTTCCACTCTCAAGAGCCAAATTGAACCTGGTTCTCTCATCCTTCACGAAGTGAAGTGCAACTTCTGGAAATCCCTTTTGTTGCAAATATGCAATCATTGCTTGCCCACAGAGCTGTGA

Protein sequence

MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVMYARGIFDYACIALPKSLHTQPIPMIFFIDCCSRCNCNLNISTLKSQIEPGSLILHEVKCNFWKSLLLQICNHCLPTEL
Homology
[Close]
BLAST of Cmc11g0288941 vs. NCBI nr
Match: KAB8109720.1 (hypothetical protein EE612_046128 [Oryza sativa] >BAT06918.1 Os09g0128101 [Oryza sativa Japonica Group])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVM 54
           +TL +GQSP  + G GG +R+ V PSG++G+ SPNSAASLSA S  PWV AV+
Sbjct: 98  ITLSNGQSPLAVRGAGGIKRERVFPSGREGIFSPNSAASLSAISVSPWVAAVI 150

[Close]
BLAST of Cmc11g0288941 vs. NCBI nr
Match: KFK32902.1 (hypothetical protein AALP_AA6G303100 [Arabis alpina])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKP 48
           +TLRSGQSPPHM G GG R D V PSGK+G  SP+S AS SA S KP
Sbjct: 99  ITLRSGQSPPHMMGDGGIRSDGVFPSGKEGTLSPSSVASRSAMSFKP 145

[Close]
BLAST of Cmc11g0288941 vs. NCBI nr
Match: KAB8093250.1 (hypothetical protein EE612_019994 [Oryza sativa] >BAS86026.1 Os03g0711425 [Oryza sativa Japonica Group])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-05
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVM 54
           +TL +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Sbjct: 98  ITLSNGQSPLAVRGAGGIKRERAFPSGREGIFSPSSAASLSAISVSPWVVAVI 150

[Close]
BLAST of Cmc11g0288941 vs. NCBI nr
Match: KAB8093252.1 (hypothetical protein EE612_019996 [Oryza sativa] >BAS86029.1 Os03g0711525 [Oryza sativa Japonica Group])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVM 54
           +T  +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Sbjct: 98  ITRSNGQSPLAVRGAGGIKRERAFPSGREGIFSPSSAASLSAISVSPWVVAVI 150

[Close]
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match: A0A0P0XIL4 (Os09g0128101 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0128101 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.6e-07
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVM 54
           +TL +GQSP  + G GG +R+ V PSG++G+ SPNSAASLSA S  PWV AV+
Sbjct: 98  ITLSNGQSPLAVRGAGGIKRERVFPSGREGIFSPNSAASLSAISVSPWVAAVI 150

[Close]
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match: A0A087GSQ0 (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA6G303100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKP 48
           +TLRSGQSPPHM G GG R D V PSGK+G  SP+S AS SA S KP
Sbjct: 99  ITLRSGQSPPHMMGDGGIRSDGVFPSGKEGTLSPSSVASRSAMSFKP 145

[Close]
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match: A0A0P0W219 (Os03g0711425 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711425 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVM 54
           +TL +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Sbjct: 98  ITLSNGQSPLAVRGAGGIKRERAFPSGREGIFSPSSAASLSAISVSPWVVAVI 150

[Close]
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match: A0A0P0W2R7 (Os03g0711525 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711525 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.9e-05
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 1   MTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVEAVM 54
           +T  +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Sbjct: 98  ITRSNGQSPLAVRGAGGIKRERAFPSGREGIFSPSSAASLSAISVSPWVVAVI 150

[Close]
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match: A0A397ZKK8 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_D01323 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-04
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 2  TLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATS 45
          TL+ GQSPPHMTG GG R D V PSG  G  SP+S AS+S  S
Sbjct: 23 TLKRGQSPPHMTGDGGMRIDEVFPSGSTGTLSPSSVASISTRS 65

The following BLAST results are available for this feature:
BLAST of Cmc11g0288941 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8109720.12.0e-0658.49hypothetical protein EE612_046128 [Oryza sativa] >BAT06918.1 Os09g0128101 [Oryza... [more]
KFK32902.12.6e-0668.09hypothetical protein AALP_AA6G303100 [Arabis alpina][more]
KAB8093250.12.9e-0554.72hypothetical protein EE612_019994 [Oryza sativa] >BAS86026.1 Os03g0711425 [Oryza... [more]
KAB8093252.11.4e-0452.83hypothetical protein EE612_019996 [Oryza sativa] >BAS86029.1 Os03g0711525 [Oryza... [more]
BLAST of Cmc11g0288941 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0XIL49.6e-0758.49Os09g0128101 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0128101 PE... [more]
A0A087GSQ01.3e-0668.09Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA6G303100 PE=4 SV=1[more]
A0A0P0W2191.4e-0554.72Os03g0711425 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711425 PE... [more]
A0A0P0W2R76.9e-0552.83Os03g0711525 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711525 PE... [more]
A0A397ZKK85.8e-0462.79Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_D01323 PE=4 SV=1[more]
BLAST of Cmc11g0288941 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0288941.1Cmc11g0288941.1mRNA