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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. TTTGCATTAGGCAGAGTAAGAGTTAGGATTTATAGTGAACAAAAGAAGTCACATAGAAGTTGATGCTGAATTGTTTCTGTATAAACTTTTTTATAATCACAATTTCTGTAAGTAATTTTTCTTTACAATGCCACTCGTATACAAGTAAGAAGGCACTCTAATCAAATACATTCTCTTGCAACTAAAAAAGCAAGTGAATGGAGAAAAAAAAATAGAAAAAATTTGTCATAAATGACAGATTGCCCTTTACTCTTCATCCTTCAAGCTACTTTCAACCTAGAAGTGAGATCAACAAAGGCATCTTCTTTGCAAGGAATTGTTAGACCCCCATGGGGATGGTGGAAGCCAAACTCTTCCTCTGCACGGCTAAGCAGTTGCTGGAACGATGGATCGTTTAAGTAAGATACCGGAACCACGAACCGCTTCCTTTGAATCTCTCCCACGTAAACCGCCACATGGCCTTTTGGAACATCCAGTTGGTTTTTGGTAAAACCTGACTGCATCTTCAAGATTTTCTTTGCATGAGGAACCAAAGATAGCAATGGAACCCCCATTTGTGTTAAGACGAAAGATTGAGAAAGAGATTTGAAGTTTTGTTCAGATTGGTACAGAACCAAGTAGAAGAGGAAGTAAACAGTTGAATTTGGTTGTTTCAGCCTCATAGTATGTTTATATTTATAGAGATATGAAGAAAGAGCTTTGAAAGTCATTGGTGTTTATCTAATT mRNA sequence TTTGCATTAGGCAGAGTAAGAGTTAGGATTTATAGTGAACAAAAGAAGTCACATAGAAGTTGATGCTGAATTGTTTCTGTATAAACTTTTTTATAATCACAATTTCTGTAAGTAATTTTTCTTTACAATGCCACTCGTATACAAGTAAGAAGGCACTCTAATCAAATACATTCTCTTGCAACTAAAAAAGCAAGTGAATGGAGAAAAAAAAATAGAAAAAATTTGTCATAAATGACAGATTGCCCTTTACTCTTCATCCTTCAAGCTACTTTCAACCTAGAAGTGAGATCAACAAAGGCATCTTCTTTGCAAGGAATTGTTAGACCCCCATGGGGATGGTGGAAGCCAAACTCTTCCTCTGCACGGCTAAGCAGTTGCTGGAACGATGGATCGTTTAAGTAAGATACCGGAACCACGAACCGCTTCCTTTGAATCTCTCCCACGTAAACCGCCACATGGCCTTTTGGAACATCCAGTTGGTTTTTGGTAAAACCTGACTGCATCTTCAAGATTTTCTTTGCATGAGGAACCAAAGATAGCAATGGAACCCCCATTTGTGTTAAGACGAAAGATTGAGAAAGAGATTTGAAGTTTTGTTCAGATTGGTACAGAACCAAGTAGAAGAGGAAGTAAACAGTTGAATTTGGTTGTTTCAGCCTCATAGTATGTTTATATTTATAGAGATATGAAGAAAGAGCTTTGAAAGTCATTGGTGTTTATCTAATT Coding sequence (CDS) ATGACAGATTGCCCTTTACTCTTCATCCTTCAAGCTACTTTCAACCTAGAAGTGAGATCAACAAAGGCATCTTCTTTGCAAGGAATTGTTAGACCCCCATGGGGATGGTGGAAGCCAAACTCTTCCTCTGCACGGCTAAGCAGTTGCTGGAACGATGGATCGTTTAAGTAA Protein sequence MTDCPLLFILQATFNLEVRSTKASSLQGIVRPPWGWWKPNSSSARLSSCWNDGSFK
Homology
BLAST of Cmc11g0288291 vs. NCBI nr
Match: KAG6571061.1 (hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04 Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 0
Query: 8 FILQATFNLEVRSTKASSLQGIVRPPWGWWKPNSSSARLSSCWNDG 54
F + FNLEV S KASSLQ +V PP GW PNSSSA LS N+G
Sbjct: 29 FTNEGWFNLEVTSMKASSLQEMVNPPVGWLNPNSSSALLSKSKNEG 74
BLAST of Cmc11g0288291 vs. NCBI nr
Match: KAF4382035.1 (hypothetical protein G4B88_006667 [Cannabis sativa]) HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04 Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query: 7 LFILQATFNLEVRSTKASSLQGIVRPPWGWWKPNSSSARLSSCWNDGSFK 57
+F+L+ + L++ K +GIVRPP GW PNSSSAR + WN G FK
Sbjct: 88 VFVLRICYGLQLIFQKLGETRGIVRPPVGWSNPNSSSARFNKFWNKGWFK 137
BLAST of Cmc11g0288291 vs. ExPASy TrEMBL
Match: A0A7J6GGK7 (Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006667 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.5e-04 Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query: 7 LFILQATFNLEVRSTKASSLQGIVRPPWGWWKPNSSSARLSSCWNDGSFK 57
+F+L+ + L++ K +GIVRPP GW PNSSSAR + WN G FK
Sbjct: 88 VFVLRICYGLQLIFQKLGETRGIVRPPVGWSNPNSSSARFNKFWNKGWFK 137
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6571061.1 | 3.9e-04 | 60.87 | hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAF4382035.1 | 5.1e-04 | 48.00 | hypothetical protein G4B88_006667 [Cannabis sativa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A7J6GGK7 | 2.5e-04 | 48.00 | Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa O... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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