Cmc11g0287941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0287941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr11: 2789723 .. 2790115 (+)
RNA-Seq Expression	Cmc11g0287941
Synteny	Cmc11g0287941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATGAGTTGCTGGATGAATTACACGGAGCCAGTATTTTCTCCAAGATCGATTTAAAATCGGGATATCATCAGATCAGAGTACGCGACGAGTATGTAAAGAAGACCGCTTTCCAGACGCATGAGGGGCACTACGAATTTATGGTAATGCCTTTTGGACTTACGAATGCACCGACGACATTCCAGGCTCTCATGAATCAGGTTTTTCGTCCTTACTTACGAAAGTTTATCTTGGTATTTTTCGATGATATTCTAGTATACAGCAAAGACGCAGAATCACATTTGGAGCATCTCACGATTTTATTCACTCTGTTGCGGGAACATAGCCTTTTCGCAAACCGAAAGAAATGTCAATTCGGGAAGGAACGAATTGAATATTTGGGACACTAG

mRNA sequence

ATGATCGATGAGTTGCTGGATGAATTACACGGAGCCAGTATTTTCTCCAAGATCGATTTAAAATCGGGATATCATCAGATCAGAGTACGCGACGAGTATGTAAAGAAGACCGCTTTCCAGACGCATGAGGGGCACTACGAATTTATGGTAATGCCTTTTGGACTTACGAATGCACCGACGACATTCCAGGCTCTCATGAATCAGGTTTTTCGTCCTTACTTACGAAAGTTTATCTTGGTATTTTTCGATGATATTCTAGTATACAGCAAAGACGCAGAATCACATTTGGAGCATCTCACGATTTTATTCACTCTGTTGCGGGAACATAGCCTTTTCGCAAACCGAAAGAAATGTCAATTCGGGAAGGAACGAATTGAATATTTGGGACACTAG

Coding sequence (CDS)

ATGATCGATGAGTTGCTGGATGAATTACACGGAGCCAGTATTTTCTCCAAGATCGATTTAAAATCGGGATATCATCAGATCAGAGTACGCGACGAGTATGTAAAGAAGACCGCTTTCCAGACGCATGAGGGGCACTACGAATTTATGGTAATGCCTTTTGGACTTACGAATGCACCGACGACATTCCAGGCTCTCATGAATCAGGTTTTTCGTCCTTACTTACGAAAGTTTATCTTGGTATTTTTCGATGATATTCTAGTATACAGCAAAGACGCAGAATCACATTTGGAGCATCTCACGATTTTATTCACTCTGTTGCGGGAACATAGCCTTTTCGCAAACCGAAAGAAATGTCAATTCGGGAAGGAACGAATTGAATATTTGGGACACTAG

Protein sequence

MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPTTFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQFGKERIEYLGH

Homology

[Close]

BLAST of Cmc11g0287941 vs. NCBI nr
Match: KAA0045701.1 (Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa] >TYJ99581.1 Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 7.6e-67
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTH+GHYEFMVMPFGLTNAPT
Sbjct: 25  MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHKGHYEFMVMPFGLTNAPT 84

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHL ILFTLLREHSLFANRKKCQF
Sbjct: 85  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLAILFTLLREHSLFANRKKCQF 144

Query: 121 GKERIEYLGH 131
           GKERIEYLGH
Sbjct: 145 GKERIEYLGH 154

[Close]

BLAST of Cmc11g0287941 vs. NCBI nr
Match: KAA0039534.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK15287.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDELHGASIFSKIDLKSGYHQIRVRDE VKKTAFQTHEGH EFMVMPFGLTNAP 
Sbjct: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEDVKKTAFQTHEGHCEFMVMPFGLTNAPA 60

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKD ESHLEHL+I+FTLLREHSLFANRKKC F
Sbjct: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHF 120

Query: 121 GKERIEYLGH 131
           GKERIEYLGH
Sbjct: 121 GKERIEYLGH 130

[Close]

BLAST of Cmc11g0287941 vs. NCBI nr
Match: KAA0037087.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06557.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 118/130 (90.77%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDEL+DELHGASIFSKIDLKSGYHQIRVR+E VKKTAF+ HEGHYEF+VMPFGLT+AP 
Sbjct: 127 MIDELVDELHGASIFSKIDLKSGYHQIRVREEDVKKTAFRMHEGHYEFLVMPFGLTSAPA 186

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLT++F+LLREHSLFANRKKC F
Sbjct: 187 TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTLVFSLLREHSLFANRKKCHF 246

Query: 121 GKERIEYLGH 131
           GKERIEYLGH
Sbjct: 247 GKERIEYLGH 256

[Close]

BLAST of Cmc11g0287941 vs. NCBI nr
Match: KAA0056798.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 2.8e-61
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDELHGA+IFSKIDLKS YHQIRVRDE VKKTAF+THEGHYEFMVMPF LTNAP 
Sbjct: 130 MIDELLDELHGATIFSKIDLKSVYHQIRVRDEDVKKTAFRTHEGHYEFMVMPFDLTNAPA 189

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKD ESHLEHLTI+FTLLREHSLFANRKKC F
Sbjct: 190 TFQALMNQVFRPYLRKFILVFFDDILVYSKDVESHLEHLTIVFTLLREHSLFANRKKCHF 249

Query: 121 GKERIEYLGH 131
           G+E+IEYLGH
Sbjct: 250 GREQIEYLGH 259

[Close]

BLAST of Cmc11g0287941 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 8.4e-58
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDEL GASIFSKIDLKSGYHQIRVRDE + KTAF+THEGHYEF+VMPFGLTNAP 
Sbjct: 675 MIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPA 734

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKF+LVFFDDILVYS+D E+HLEHLT++F LLR+H LFANR+KC F
Sbjct: 735 TFQALMNQVFRPYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHF 794

Query: 121 GKERIEYLGH 131
            K+RIEYLGH
Sbjct: 795 AKDRIEYLGH 804

[Close]

BLAST of Cmc11g0287941 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-28
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 2   IDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPTT 61
           +DE+L +L     F+ IDL  G+HQI + +E + KTAF T  GHYE++ MPFGL NAP T
Sbjct: 284 MDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPAT 343

Query: 62  FQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQFG 121
           FQ  MN + RP L K  LV+ DDI+++S     HL  + ++FT L + +L     KC+F 
Sbjct: 344 FQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFL 403

Query: 122 KERIEYLGH 131
           K+   +LGH
Sbjct: 404 KKEANFLGH 412

[Close]

BLAST of Cmc11g0287941 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-28
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 2   IDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPTT 61
           +DE+L +L   + F+ IDL  G+HQI +  E V KTAF T  GHYE++ MPFGL NAP T
Sbjct: 285 MDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPAT 344

Query: 62  FQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQFG 121
           FQ  MN + RP L K  LV+ DDI+V+S   + HL+ L ++F  L + +L     KC+F 
Sbjct: 345 FQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFL 404

Query: 122 KERIEYLGH 131
           K+   +LGH
Sbjct: 405 KQETTFLGH 413

[Close]

BLAST of Cmc11g0287941 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 2   IDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPTT 61
           ID LL  +  A IF+ +DL SGYHQI +  +   KTAF T  G YE+ VMPFGL NAP+T
Sbjct: 669 IDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPST 728

Query: 62  FQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQFG 121
           F   M   FR    +F+ V+ DDIL++S+  E H +HL  +   L+  +L   +KKC+F 
Sbjct: 729 FARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFA 788

Query: 122 KERIEYLGH 131
            E  E+LG+
Sbjct: 789 SEETEFLGY 795

[Close]

BLAST of Cmc11g0287941 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 2   IDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPTT 61
           ID LL  +  A IF+ +DL SGYHQI +  +   KTAF T  G YE+ VMPFGL NAP+T
Sbjct: 695 IDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPST 754

Query: 62  FQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQFG 121
           F   M   FR    +F+ V+ DDIL++S+  E H +HL  +   L+  +L   +KKC+F 
Sbjct: 755 FARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFA 814

Query: 122 KERIEYLGH 131
            E  E+LG+
Sbjct: 815 SEETEFLGY 821

[Close]

BLAST of Cmc11g0287941 vs. ExPASy Swiss-Prot
Match: P03555 (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF V PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 3   DELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPTTF 62
           DELL  + G  IFS  D KSG+ Q+ +  E    TAF   +GHYE+ V+PFGL  AP+ F
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383

Query: 63  QALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQFGK 122
           Q  M++ FR + RKF  V+ DDILV+S + E HL H+ ++     +H +  ++KK Q  K
Sbjct: 384 QRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFK 443

Query: 123 ERIEYLG 130
           ++I +LG
Sbjct: 444 KKINFLG 449

[Close]

BLAST of Cmc11g0287941 vs. ExPASy TrEMBL
Match: A0A5D3BLH4 (Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001530 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.7e-67
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTH+GHYEFMVMPFGLTNAPT
Sbjct: 25  MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHKGHYEFMVMPFGLTNAPT 84

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHL ILFTLLREHSLFANRKKCQF
Sbjct: 85  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLAILFTLLREHSLFANRKKCQF 144

Query: 121 GKERIEYLGH 131
           GKERIEYLGH
Sbjct: 145 GKERIEYLGH 154

[Close]

BLAST of Cmc11g0287941 vs. ExPASy TrEMBL
Match: A0A5A7T7U6 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00670 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDELHGASIFSKIDLKSGYHQIRVRDE VKKTAFQTHEGH EFMVMPFGLTNAP 
Sbjct: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEDVKKTAFQTHEGHCEFMVMPFGLTNAPA 60

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKD ESHLEHL+I+FTLLREHSLFANRKKC F
Sbjct: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHF 120

Query: 121 GKERIEYLGH 131
           GKERIEYLGH
Sbjct: 121 GKERIEYLGH 130

[Close]

BLAST of Cmc11g0287941 vs. ExPASy TrEMBL
Match: A0A5A7T6A3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00140 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.1e-62
Identity = 118/130 (90.77%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDEL+DELHGASIFSKIDLKSGYHQIRVR+E VKKTAF+ HEGHYEF+VMPFGLT+AP 
Sbjct: 127 MIDELVDELHGASIFSKIDLKSGYHQIRVREEDVKKTAFRMHEGHYEFLVMPFGLTSAPA 186

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLT++F+LLREHSLFANRKKC F
Sbjct: 187 TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTLVFSLLREHSLFANRKKCHF 246

Query: 121 GKERIEYLGH 131
           GKERIEYLGH
Sbjct: 247 GKERIEYLGH 256

[Close]

BLAST of Cmc11g0287941 vs. ExPASy TrEMBL
Match: A0A5A7UNX8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00450 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDELHGA+IFSKIDLKS YHQIRVRDE VKKTAF+THEGHYEFMVMPF LTNAP 
Sbjct: 130 MIDELLDELHGATIFSKIDLKSVYHQIRVRDEDVKKTAFRTHEGHYEFMVMPFDLTNAPA 189

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKFILVFFDDILVYSKD ESHLEHLTI+FTLLREHSLFANRKKC F
Sbjct: 190 TFQALMNQVFRPYLRKFILVFFDDILVYSKDVESHLEHLTIVFTLLREHSLFANRKKCHF 249

Query: 121 GKERIEYLGH 131
           G+E+IEYLGH
Sbjct: 250 GREQIEYLGH 259

[Close]

BLAST of Cmc11g0287941 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.1e-58
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MIDELLDELHGASIFSKIDLKSGYHQIRVRDEYVKKTAFQTHEGHYEFMVMPFGLTNAPT 60
           MIDELLDEL GASIFSKIDLKSGYHQIRVRDE + KTAF+THEGHYEF+VMPFGLTNAP 
Sbjct: 675 MIDELLDELSGASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPA 734

Query: 61  TFQALMNQVFRPYLRKFILVFFDDILVYSKDAESHLEHLTILFTLLREHSLFANRKKCQF 120
           TFQALMNQVFRPYLRKF+LVFFDDILVYS+D E+HLEHLT++F LLR+H LFANR+KC F
Sbjct: 735 TFQALMNQVFRPYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHF 794

Query: 121 GKERIEYLGH 131
            K+RIEYLGH
Sbjct: 795 AKDRIEYLGH 804

[Close]

BLAST of Cmc11g0287941 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 16/35 (45.71%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 96  LEHLTILFTLLREHSLFANRKKCQFGKERIEYLGH 131
           + HL ++  +  +H  +ANRKKC FG+ +I YLGH
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGH 35

The following BLAST results are available for this feature:

BLAST of Cmc11g0287941 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045701.1	7.6e-67	98.46	Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuw...	[more]
KAA0039534.1	3.0e-63	94.62	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK15287.1 Transposon T...	[more]
KAA0037087.1	1.3e-61	90.77	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06557.1 Ty3/gyp...	[more]
KAA0056798.1	2.8e-61	91.54	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Tran...	[more]
TYK21209.1	8.4e-58	84.62	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0287941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.5e-28	44.96	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.2e-28	46.51	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	1.2e-25	44.96	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.2e-25	44.96	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P03555	1.8e-23	43.31	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=O...	[more]

BLAST of Cmc11g0287941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLH4	3.7e-67	98.46	Retrovirus-related Pol polyprotein from transposon opus OS=Cucumis melo var. mak...	[more]
A0A5A7T7U6	1.4e-63	94.62	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T6A3	6.1e-62	90.77	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UNX8	1.4e-61	91.54	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BD16	4.1e-58	84.62	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc11g0287941 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.0e-04	45.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 25..57 e-value: 3.3E-53 score: 182.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..83
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 1..83
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..130 e-value: 2.10404E-64 score: 191.655
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 2..130 e-value: 3.3E-53 score: 182.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..130 e-value: 8.1E-29 score: 100.7
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..130 score: 16.378252
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0287941.1	Cmc11g0287941.1	mRNA