Cmc11g0287491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0287491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	TTF-type domain-containing protein
Location	CMiso1.1chr11: 2450517 .. 2450837 (-)
RNA-Seq Expression	Cmc11g0287491
Synteny	Cmc11g0287491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTTTGAATTCAAGTAATTCATTTGCTGCTTTTGATAGACAAAAACTTAGTCAACTTGCTCAGTTTTATCCAACATACTTTTCAGTTATTGAACTTTATATGCTTGAGGATCAACTTCAAAATTACATTATTGATATGCGTTCAGAGTTTGTTGAACTAAAAAACATTGGTGATCTTACAATGAAAATGGTTGTTACGAAAAGAAATAAGGTCTATCCATTAGTTTATTGGTTGCTCACATTGGCGTTGGTTTTACTGGTTGCAACAACTACTATAGAGAGAACATTTTCTGCTATGAATATTGTGAAGGCTTGA

mRNA sequence

ATGGCTTGTTTGAATTCAAGTAATTCATTTGCTGCTTTTGATAGACAAAAACTTAGTCAACTTGCTCAGTTTTATCCAACATACTTTTCAGTTATTGAACTTTATATGCTTGAGGATCAACTTCAAAATTACATTATTGATATGCGTTCAGAGTTTGTTGAACTAAAAAACATTGGTGATCTTACAATGAAAATGGTTGTTACGAAAAGAAATAAGGTCTATCCATTAGTTTATTGGTTGCTCACATTGGCGTTGGTTTTACTGGTTGCAACAACTACTATAGAGAGAACATTTTCTGCTATGAATATTGTGAAGGCTTGA

Coding sequence (CDS)

ATGGCTTGTTTGAATTCAAGTAATTCATTTGCTGCTTTTGATAGACAAAAACTTAGTCAACTTGCTCAGTTTTATCCAACATACTTTTCAGTTATTGAACTTTATATGCTTGAGGATCAACTTCAAAATTACATTATTGATATGCGTTCAGAGTTTGTTGAACTAAAAAACATTGGTGATCTTACAATGAAAATGGTTGTTACGAAAAGAAATAAGGTCTATCCATTAGTTTATTGGTTGCTCACATTGGCGTTGGTTTTACTGGTTGCAACAACTACTATAGAGAGAACATTTTCTGCTATGAATATTGTGAAGGCTTGA

Protein sequence

MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVKA

Homology

[Close]

BLAST of Cmc11g0287491 vs. NCBI nr
Match: KAA0066112.1 (Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGD 60
           MACLN SNSFAAFDRQKLS+LAQFYP  FS IEL MLED+LQNYIIDMRSEFVELK+IGD
Sbjct: 1   MACLNPSNSFAAFDRQKLSRLAQFYPRDFSAIELSMLEDRLQNYIIDMRSEFVELKSIGD 60

Query: 61  LTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           L +KMVVTKR+KVY LVY LLTLAL+L VAT TIERTFSAMN+VK
Sbjct: 61  LAVKMVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMNVVK 105

[Close]

BLAST of Cmc11g0287491 vs. NCBI nr
Match: TYJ97373.1 (Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGD 60
           MACLN  NSFAAFD+QKLS+LAQFYP  FS IEL MLEDQLQNYIIDM SEFVELKNIG+
Sbjct: 1   MACLNLINSFAAFDKQKLSRLAQFYPRDFSAIELSMLEDQLQNYIIDMHSEFVELKNIGN 60

Query: 61  LTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           L +KMVVTKR+KV PLVY LLTLAL+L VAT T+ERTFSAMNIVK
Sbjct: 61  LAVKMVVTKRDKVNPLVYRLLTLALILSVATATVERTFSAMNIVK 105

[Close]

BLAST of Cmc11g0287491 vs. NCBI nr
Match: XP_008457138.1 (PREDICTED: uncharacterized protein LOC103496885 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-33
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGD 60
           +ACLN SNSF AF+RQKLS+LAQF+P  FS IEL MLEDQ QNYIID+RS+FVELK+IGD
Sbjct: 96  IACLNPSNSFVAFNRQKLSRLAQFFPRNFSAIELSMLEDQFQNYIIDIRSKFVELKSIGD 155

Query: 61  LTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           + +KMVVTKR K+YPLVY LLTLAL+LL+A  T+ERTFSAMNIVK
Sbjct: 156 IAVKMVVTKRYKIYPLVYRLLTLALILLIAIATVERTFSAMNIVK 200

[Close]

BLAST of Cmc11g0287491 vs. NCBI nr
Match: TYK00355.1 (copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-26
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNI 60
           +ACLN SNSF AFDRQKL  LAQFYP  FS  EL +LEDQLQNYIID+ S+  FV L +I
Sbjct: 115 VACLNPSNSFTAFDRQKLICLAQFYPRDFSTTELLILEDQLQNYIIDVCSDNMFVGLTSI 174

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           GDL+ KMV+T ++KVYPLVY LLTLAL+L V   T+ERTFSAM+I+K
Sbjct: 175 GDLSQKMVITAKDKVYPLVYRLLTLALILPVTMATVERTFSAMSIIK 221

[Close]

BLAST of Cmc11g0287491 vs. NCBI nr
Match: XP_024155975.1 (zinc finger MYM-type protein 1-like [Rosa chinensis])

HSP 1 Score: 124.8 bits (312), Expect = 4.5e-25
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRS--EFVELKNI 60
           M+CLN  NSF+AFD++KL +LAQ+YP  FS  +L +L+DQL+NYI+DMRS  EF ELK I
Sbjct: 639 MSCLNPRNSFSAFDKEKLIKLAQYYPQDFSAHDLEVLDDQLENYIVDMRSNIEFFELKGI 698

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
            DL  KMV TK++  YPLVY LLTLAL+L VAT ++ER FSAMNIVK
Sbjct: 699 TDLAKKMVQTKKDVTYPLVYLLLTLALILPVATASVERVFSAMNIVK 745

[Close]

BLAST of Cmc11g0287491 vs. ExPASy TrEMBL
Match: A0A5A7VCQ2 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00160 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGD 60
           MACLN SNSFAAFDRQKLS+LAQFYP  FS IEL MLED+LQNYIIDMRSEFVELK+IGD
Sbjct: 1   MACLNPSNSFAAFDRQKLSRLAQFYPRDFSAIELSMLEDRLQNYIIDMRSEFVELKSIGD 60

Query: 61  LTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           L +KMVVTKR+KVY LVY LLTLAL+L VAT TIERTFSAMN+VK
Sbjct: 61  LAVKMVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMNVVK 105

[Close]

BLAST of Cmc11g0287491 vs. ExPASy TrEMBL
Match: A0A5D3BDJ0 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001870 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.8e-35
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGD 60
           MACLN  NSFAAFD+QKLS+LAQFYP  FS IEL MLEDQLQNYIIDM SEFVELKNIG+
Sbjct: 1   MACLNLINSFAAFDKQKLSRLAQFYPRDFSAIELSMLEDQLQNYIIDMHSEFVELKNIGN 60

Query: 61  LTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           L +KMVVTKR+KV PLVY LLTLAL+L VAT T+ERTFSAMNIVK
Sbjct: 61  LAVKMVVTKRDKVNPLVYRLLTLALILSVATATVERTFSAMNIVK 105

[Close]

BLAST of Cmc11g0287491 vs. ExPASy TrEMBL
Match: A0A1S3C638 (uncharacterized protein LOC103496885 OS=Cucumis melo OX=3656 GN=LOC103496885 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSEFVELKNIGD 60
           +ACLN SNSF AF+RQKLS+LAQF+P  FS IEL MLEDQ QNYIID+RS+FVELK+IGD
Sbjct: 96  IACLNPSNSFVAFNRQKLSRLAQFFPRNFSAIELSMLEDQFQNYIIDIRSKFVELKSIGD 155

Query: 61  LTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           + +KMVVTKR K+YPLVY LLTLAL+LL+A  T+ERTFSAMNIVK
Sbjct: 156 IAVKMVVTKRYKIYPLVYRLLTLALILLIAIATVERTFSAMNIVK 200

[Close]

BLAST of Cmc11g0287491 vs. ExPASy TrEMBL
Match: A0A5D3BMQ7 (Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00190 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNI 60
           +ACLN SNSF AFDRQKL  LAQFYP  FS  EL +LEDQLQNYIID+ S+  FV L +I
Sbjct: 115 VACLNPSNSFTAFDRQKLICLAQFYPRDFSTTELLILEDQLQNYIIDVCSDNMFVGLTSI 174

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           GDL+ KMV+T ++KVYPLVY LLTLAL+L V   T+ERTFSAM+I+K
Sbjct: 175 GDLSQKMVITAKDKVYPLVYRLLTLALILPVTMATVERTFSAMSIIK 221

[Close]

BLAST of Cmc11g0287491 vs. ExPASy TrEMBL
Match: A0A6P5TKH2 (zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110768262 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRS--EFVELKNI 60
           MACL+ SNSF+AFD+ KL +LAQFYP  FS  +L +LEDQL+NYI D+ S  EF ELK I
Sbjct: 311 MACLSPSNSFSAFDKAKLMRLAQFYPRDFSKHDLKLLEDQLENYIWDVSSNNEFTELKGI 370

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
            DL  KMV T ++K+YPLVY LLTLAL+L VAT ++ER FSAMNIVK
Sbjct: 371 SDLAQKMVETNKDKIYPLVYLLLTLALILSVATASVERVFSAMNIVK 417

[Close]

BLAST of Cmc11g0287491 vs. TAIR 10
Match: AT1G19260.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-16
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNI 60
           M+ L+  +SF  FD+  L +L +FYP  FS +E   L+ QL+ Y+ +++++  F +LK +
Sbjct: 616 MSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLKCL 675

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           GDL   MV T+++  +PLVY LL ++L+L VAT T+ER FSAMN VK
Sbjct: 676 GDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCFSAMNFVK 722

[Close]

BLAST of Cmc11g0287491 vs. TAIR 10
Match: AT3G29765.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 47/107 (43.93%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNI 60
           M+ L+  +SF  FD+  L +L +FYP  FS +E   L+ QL+ Y+ +++++  F +L+++
Sbjct: 383 MSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLEHL 442

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNIVK 106
           GDL   MV T+++  +PLVY LL L+L+L VAT T+ R FSAMN VK
Sbjct: 443 GDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVVRCFSAMNFVK 489

[Close]

BLAST of Cmc11g0287491 vs. TAIR 10
Match: AT4G09660.1 (CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 839 Blast hits to 796 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 438; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 7.6e-15
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNI 60
           M+ L+  +SF  FD+  L +L +FYP  FS +E   L+ QL+ Y+ +++++  F +LK  
Sbjct: 560 MSSLSPIDSFCQFDKSMLVRLTEFYPDEFSFVERRSLDHQLEIYLDNVKNDERFTDLKCF 619

Query: 61  GDLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAM 102
           GDL   MV T+++  +PLVY LL L+L+L VAT T+ER FSAM
Sbjct: 620 GDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVERCFSAM 662

[Close]

BLAST of Cmc11g0287491 vs. TAIR 10
Match: AT3G31402.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 74.3 bits (181), Expect = 6.5e-14
Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 2   ACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNIG 61
           A L+  ++F  FD  KL +L++FY   FS+ E   +E +L  YI  +R++  F  LKN+G
Sbjct: 257 ASLSPIDAFYEFDHSKLVRLSKFYQVDFSLGEFISIEKELSIYIDTVRNDERFSNLKNLG 316

Query: 62  DLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNI 104
           D+  K+V T+++  YP  Y LL L L+L VAT T+ER FSAM I
Sbjct: 317 DIAQKVVETRKHLSYPFGYRLLKLVLILHVATATVERCFSAMKI 360

[Close]

BLAST of Cmc11g0287491 vs. TAIR 10
Match: AT3G31402.2 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 74.3 bits (181), Expect = 6.5e-14
Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 2   ACLNSSNSFAAFDRQKLSQLAQFYPTYFSVIELYMLEDQLQNYIIDMRSE--FVELKNIG 61
           A L+  ++F  FD  KL +L++FY   FS+ E   +E +L  YI  +R++  F  LKN+G
Sbjct: 175 ASLSPIDAFYEFDHSKLVRLSKFYQVDFSLGEFISIEKELSIYIDTVRNDERFSNLKNLG 234

Query: 62  DLTMKMVVTKRNKVYPLVYWLLTLALVLLVATTTIERTFSAMNI 104
           D+  K+V T+++  YP  Y LL L L+L VAT T+ER FSAM I
Sbjct: 235 DIAQKVVETRKHLSYPFGYRLLKLVLILHVATATVERCFSAMKI 278

The following BLAST results are available for this feature:

BLAST of Cmc11g0287491 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066112.1	1.3e-35	83.81	Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 D...	[more]
TYJ97373.1	1.8e-34	81.90	Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008457138.1	3.4e-33	76.19	PREDICTED: uncharacterized protein LOC103496885 [Cucumis melo]	[more]
TYK00355.1	2.4e-26	68.22	copia-type polyprotein [Cucumis melo var. makuwa]	[more]
XP_024155975.1	4.5e-25	64.49	zinc finger MYM-type protein 1-like [Rosa chinensis]	[more]

BLAST of Cmc11g0287491 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0287491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCQ2	6.1e-36	83.81	Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BDJ0	8.8e-35	81.90	Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3C638	1.7e-33	76.19	uncharacterized protein LOC103496885 OS=Cucumis melo OX=3656 GN=LOC103496885 PE=...	[more]
A0A5D3BMQ7	1.2e-26	68.22	Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A6P5TKH2	2.2e-25	65.42	zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110768262 PE=...	[more]

BLAST of Cmc11g0287491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19260.1	4.1e-16	44.86	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT3G29765.1	1.2e-15	43.93	General transcription factor 2-related zinc finger protein	[more]
AT4G09660.1	7.6e-15	44.66	CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Ara...	[more]
AT3G31402.1	6.5e-14	44.23	General transcription factor 2-related zinc finger protein	[more]
AT3G31402.2	6.5e-14	44.23	General transcription factor 2-related zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11697:SF219	OS02G0301400 PROTEIN	coord: 2..105
None	No IPR available	PANTHER	PTHR11697	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	coord: 2..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0287491.1	Cmc11g0287491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046983	protein dimerization activity