Cmc11g0286391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0286391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein LTV1-like protein
Location	CMiso1.1chr11: 1618730 .. 1619020 (+)
RNA-Seq Expression	Cmc11g0286391
Synteny	Cmc11g0286391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTTTCTAGAGTGAATGTTGATGTCGATGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCCTGAAATAGTTGCACTTCTTGATGACTGTAATTTATCGTGATTTGGTTCTGAAGGCTTTGTTGTTCAGGCAAACTTGGGTGAAGGTGGGGAGGATGACACAATGAACGATAAGTTTAGTGTGGTGGTTGAGGATGATGATAGAACGGGAGAATGCCTTTTAATTAACAACAAACCTTCTGGTGACCACATTTTTTAG

mRNA sequence

ATGATTGTTTCTAGAGTGAATGTTGATGTCGATGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGCAAACTTGGGTGAAGGTGGGGAGGATGACACAATGAACGATAAGTTTAGTGTGGTGGTTGAGGATGATGATAGAACGGGAGAATGCCTTTTAATTAACAACAAACCTTCTGGTGACCACATTTTTTAG

Coding sequence (CDS)

ATGATTGTTTCTAGAGTGAATGTTGATGTCGATGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGCAAACTTGGGTGAAGGTGGGGAGGATGACACAATGAACGATAAGTTTAGTGTGGTGGTTGAGGATGATGATAGAACGGGAGAATGCCTTTTAATTAACAACAAACCTTCTGGTGACCACATTTTTTAG

Protein sequence

MIVSRVNVDVDENVYKVASKIVGVRVQNVANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF

Homology

[Close]

BLAST of Cmc11g0286391 vs. NCBI nr
Match: KAA0045823.1 (protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVANLGEGGEDDTMNDKFSVVVEDDDRTGECLL 60
           MIVSRVNVDVDENVYKVASKIVGVR    ANLGEGGEDDT NDKFSVVVEDDDRTGECLL
Sbjct: 122 MIVSRVNVDVDENVYKVASKIVGVR----ANLGEGGEDDTTNDKFSVVVEDDDRTGECLL 181

Query: 61  INNKPSGDHIF 72
           INNKPSGDHIF
Sbjct: 182 INNKPSGDHIF 188

[Close]

BLAST of Cmc11g0286391 vs. NCBI nr
Match: TYJ99459.1 (protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVANLGEGGEDDTMNDKFSVVVEDDDRTGECLL 60
           MIVSRVNVDVDENVYKVASKIVGVR    ANLGEGGEDDT NDKFSVVVEDDDRTGECLL
Sbjct: 96  MIVSRVNVDVDENVYKVASKIVGVR----ANLGEGGEDDTTNDKFSVVVEDDDRTGECLL 155

Query: 61  INNKPSGDHIF 72
           INNKPSGDHIF
Sbjct: 156 INNKPSGDHIF 162

[Close]

BLAST of Cmc11g0286391 vs. NCBI nr
Match: XP_011650323.1 (protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_009930 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 53/102 (51.96%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNV------------------------------- 60
           MIVS++NVD DEN YKVASKIVGVRVQNV                               
Sbjct: 161 MIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQ 220

Query: 61  ANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF 72
           ANL E GED T N K S VVEDD+RT   LL+NNK  GDHIF
Sbjct: 221 ANLCEDGEDGTTNSKIS-VVEDDERTAGSLLVNNKSFGDHIF 261

[Close]

BLAST of Cmc11g0286391 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like protein [Cucumis melo var. makuwa] >TYK11461.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-12
Identity = 51/102 (50.00%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNV------------------------------- 60
           M+VS++NVD DENVYKVASKIVG+RVQNV                               
Sbjct: 161 MVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQ 220

Query: 61  ANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF 72
           ANL E GE D  N+KFS VVEDD+R    LL+NNK  GDHIF
Sbjct: 221 ANLCEDGEGDATNNKFS-VVEDDERKAGSLLVNNKSFGDHIF 261

[Close]

BLAST of Cmc11g0286391 vs. NCBI nr
Match: XP_038898842.1 (protein LTV1 homolog [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 45/102 (44.12%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNV------------------------------- 60
           +IVS+ N+D D N+YKVASK VGVRVQNV                               
Sbjct: 161 VIVSKGNIDADGNIYKVASKTVGVRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQ 220

Query: 61  ANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF 72
           ANL E GEDDT ++KF+ VVED +RT    L++NK  GD+IF
Sbjct: 221 ANLCEEGEDDTTDNKFT-VVEDVERTAGSHLVDNKSFGDNIF 261

[Close]

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL
Match: A0A5A7TQI5 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003480 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVANLGEGGEDDTMNDKFSVVVEDDDRTGECLL 60
           MIVSRVNVDVDENVYKVASKIVGVR    ANLGEGGEDDT NDKFSVVVEDDDRTGECLL
Sbjct: 122 MIVSRVNVDVDENVYKVASKIVGVR----ANLGEGGEDDTTNDKFSVVVEDDDRTGECLL 181

Query: 61  INNKPSGDHIF 72
           INNKPSGDHIF
Sbjct: 182 INNKPSGDHIF 188

[Close]

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL
Match: A0A5D3BKI3 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00220 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVANLGEGGEDDTMNDKFSVVVEDDDRTGECLL 60
           MIVSRVNVDVDENVYKVASKIVGVR    ANLGEGGEDDT NDKFSVVVEDDDRTGECLL
Sbjct: 96  MIVSRVNVDVDENVYKVASKIVGVR----ANLGEGGEDDTTNDKFSVVVEDDDRTGECLL 155

Query: 61  INNKPSGDHIF 72
           INNKPSGDHIF
Sbjct: 156 INNKPSGDHIF 162

[Close]

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL
Match: A0A0A0L517 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 53/102 (51.96%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNV------------------------------- 60
           MIVS++NVD DEN YKVASKIVGVRVQNV                               
Sbjct: 161 MIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQ 220

Query: 61  ANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF 72
           ANL E GED T N K S VVEDD+RT   LL+NNK  GDHIF
Sbjct: 221 ANLCEDGEDGTTNSKIS-VVEDDERTAGSLLVNNKSFGDHIF 261

[Close]

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL
Match: A0A5D3CI19 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001180 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 51/102 (50.00%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNV------------------------------- 60
           M+VS++NVD DENVYKVASKIVG+RVQNV                               
Sbjct: 161 MVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQ 220

Query: 61  ANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF 72
           ANL E GE D  N+KFS VVEDD+R    LL+NNK  GDHIF
Sbjct: 221 ANLCEDGEGDATNNKFS-VVEDDERKAGSLLVNNKSFGDHIF 261

[Close]

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL
Match: A0A1S3BKZ8 (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 51/102 (50.00%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNV------------------------------- 60
           M+VS++NVD DENVYKVASKIVG+RVQNV                               
Sbjct: 161 MVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQ 220

Query: 61  ANLGEGGEDDTMNDKFSVVVEDDDRTGECLLINNKPSGDHIF 72
           ANL E GE D  N+KFS VVEDD+R    LL+NNK  GDHIF
Sbjct: 221 ANLCEDGEGDATNNKFS-VVEDDERKAGSLLVNNKSFGDHIF 261

The following BLAST results are available for this feature:

BLAST of Cmc11g0286391 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045823.1	4.6e-26	92.96	protein LTV1-like protein [Cucumis melo var. makuwa]	[more]
TYJ99459.1	4.6e-26	92.96	protein LTV1-like protein [Cucumis melo var. makuwa]	[more]
XP_011650323.1	1.3e-12	51.96	protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_0099...	[more]
XP_008448616.1	2.2e-12	50.00	PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like p...	[more]
XP_038898842.1	7.4e-08	44.12	protein LTV1 homolog [Benincasa hispida]	[more]

BLAST of Cmc11g0286391 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQI5	2.2e-26	92.96	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BKI3	2.2e-26	92.96	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L517	6.3e-13	51.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1	[more]
A0A5D3CI19	1.1e-12	50.00	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BKZ8	1.1e-12	50.00	protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1	[more]

BLAST of Cmc11g0286391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0286391.1	Cmc11g0286391.1	mRNA