Cmc11g0285941 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0285941
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCMiso1.1chr11: 1290733 .. 1291131 (+)
RNA-Seq ExpressionCmc11g0285941
SyntenyCmc11g0285941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATGTTAAATTTGCTTTAAAGGACCTTGGGCCTCTGCACTATTTTCTTGGATTTCAAATTCATTATCTTGAGTCCGAATTTATTATGAATAAAGAAAAGTACGTTGAAGGCTTGCTTCATAAGCATCAGCTCACTGACTTAAAACCAGCACCGTCCCCGAGTGTCCTAGGCAAGCATTTATCCATTACTAATGGCATACCTTTAGAGGATCTGTTTATTTATCAAAGTACTTTTGGGGCTCTTCAGTATCTCACTAATACTCGACTAGACATATCCTATATAGTAAATCACCTTAGTCAATTTTTGCAGAAACCTACTGGTCTTCCTTGGCAGGCTGTTAAACGGGTACTTCGTTATATCAGTGGTACTAAGCATTATGACATTTTATTTTAA

mRNA sequence

ATGTTGGATGTTAAATTTGCTTTAAAGGACCTTGGGCCTCTGCACTATTTTCTTGGATTTCAAATTCATTATCTTGAGTCCGAATTTATTATGAATAAAGAAAAGTACGTTGAAGGCTTGCTTCATAAGCATCAGCTCACTGACTTAAAACCAGCACCGTCCCCGAGTGTCCTAGGCAAGCATTTATCCATTACTAATGGCATACCTTTAGAGGATCTGTTTATTTATCAAAGTACTTTTGGGGCTCTTCAGTATCTCACTAATACTCGACTAGACATATCCTATATAGTAAATCACCTTAGTCAATTTTTGCAGAAACCTACTGGTCTTCCTTGGCAGGCTGTTAAACGGGTACTTCGTTATATCAGTGGTACTAAGCATTATGACATTTTATTTTAA

Coding sequence (CDS)

ATGTTGGATGTTAAATTTGCTTTAAAGGACCTTGGGCCTCTGCACTATTTTCTTGGATTTCAAATTCATTATCTTGAGTCCGAATTTATTATGAATAAAGAAAAGTACGTTGAAGGCTTGCTTCATAAGCATCAGCTCACTGACTTAAAACCAGCACCGTCCCCGAGTGTCCTAGGCAAGCATTTATCCATTACTAATGGCATACCTTTAGAGGATCTGTTTATTTATCAAAGTACTTTTGGGGCTCTTCAGTATCTCACTAATACTCGACTAGACATATCCTATATAGTAAATCACCTTAGTCAATTTTTGCAGAAACCTACTGGTCTTCCTTGGCAGGCTGTTAAACGGGTACTTCGTTATATCAGTGGTACTAAGCATTATGACATTTTATTTTAA

Protein sequence

MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGTKHYDILF
Homology
BLAST of Cmc11g0285941 vs. NCBI nr
Match: TYK13717.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK
Sbjct: 357 MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 416

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR--- 120
           HLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR   
Sbjct: 417 HLSITNGIPLEDPFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRRRL 476

Query: 121 --VLRYISGTKHYDI 131
              L + + TKH +I
Sbjct: 477 QPNLVFHARTKHIEI 491

BLAST of Cmc11g0285941 vs. NCBI nr
Match: KAA0045871.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK
Sbjct: 511 MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 570

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR--- 120
           HLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR   
Sbjct: 571 HLSITNGIPLEDPFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRRRL 630

Query: 121 --VLRYISGTKHYDI 131
              L + + TKH +I
Sbjct: 631 QPNLVFHARTKHIEI 645

BLAST of Cmc11g0285941 vs. NCBI nr
Match: TYK30173.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 8.8e-55
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK
Sbjct: 90  MLDAKFALKDLGPLHYFLRFQIHYLESSFIMNQEKYIDDLLHKLQLTDLKPASSPSVLGK 149

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLR 120
            LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHLSQFLQKPT L WQAVKRVLR
Sbjct: 150 RLSISDGIPLKDPFMYQSTIVALQYLTNTRSNISYIVNHLSQFLQKPTDLHWQAVKRVLR 209

Query: 121 YISGTKHYDILF 133
           YISGTKHY ILF
Sbjct: 210 YISGTKHYGILF 221

BLAST of Cmc11g0285941 vs. NCBI nr
Match: KAA0057477.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 8.8e-55
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK
Sbjct: 90  MLDAKFALKDLGPLHYFLRFQIHYLESSFIMNQEKYIDDLLHKLQLTDLKPASSPSVLGK 149

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLR 120
            LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHLSQFLQKPT L WQAVKRVLR
Sbjct: 150 RLSISDGIPLKDPFMYQSTIVALQYLTNTRSNISYIVNHLSQFLQKPTDLHWQAVKRVLR 209

Query: 121 YISGTKHYDILF 133
           YISGTKHY ILF
Sbjct: 210 YISGTKHYGILF 221

BLAST of Cmc11g0285941 vs. NCBI nr
Match: KAA0042448.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03510.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 92/131 (70.23%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 2   LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKH 61
           LD +FALKDLG L YFLGFQ++YLES FI+N+EKY+  LLHK QL DLKPAPSPS +GK+
Sbjct: 92  LDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLHKLQLNDLKPAPSPSAVGKN 151

Query: 62  LSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRY 121
           LS   G PLED F+Y++T GALQYLTNTR DI+YIVN LSQFLQKPT L W+AVKRVL+Y
Sbjct: 152 LSAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIVNQLSQFLQKPTDLHWKAVKRVLKY 211

Query: 122 ISGTKHYDILF 133
           +SGTK + ++F
Sbjct: 212 LSGTKSFGLMF 222

BLAST of Cmc11g0285941 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-20
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 2    LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKH 61
            L  +F++KD   LHYFLG +   + +   +++ +Y+  LL +  +   KP  +P      
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230

Query: 62   LSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRY 121
            LS+ +G  L D   Y+   G+LQYL  TR DISY VN LSQF+  PT    QA+KR+LRY
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRY 1290

Query: 122  ISGTKHYDI 131
            ++GT ++ I
Sbjct: 1291 LAGTPNHGI 1299

BLAST of Cmc11g0285941 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 2   LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKH 61
           L   F++KDLGP+HYFLG QI    S   +++ KY E +L+   + D KP  +P  L  +
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 62  LSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRY 121
            S++      D   ++S  GALQYLT TR DISY VN + Q + +PT   +  +KRVLRY
Sbjct: 87  SSVSTA-KYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 122 ISGT 126
           + GT
Sbjct: 147 VKGT 149

BLAST of Cmc11g0285941 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 0

Query: 2    LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKH 61
            L  +F++K+   LHYFLG +   +     +++ +Y   LL +  +   KP  +P      
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213

Query: 62   LSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRY 121
            L++ +G  L D   Y+   G+LQYL  TR D+SY VN LSQ++  PT   W A+KRVLRY
Sbjct: 1214 LTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRY 1273

Query: 122  ISGTKHYDI 131
            ++GT  + I
Sbjct: 1274 LAGTPDHGI 1282

BLAST of Cmc11g0285941 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-11
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 2    LDVKFALKDLGPLHYFLGFQI--HYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLG 61
            L   F +KDLGP    LG +I       +  +++EKY+E +L +  + + KP  +P  L 
Sbjct: 1029 LSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP--LA 1088

Query: 62   KHLSITNGI---PLED-----LFIYQSTFGALQY-LTNTRLDISYIVNHLSQFLQKPTGL 121
             HL ++  +    +E+        Y S  G+L Y +  TR DI++ V  +S+FL+ P   
Sbjct: 1089 GHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKE 1148

Query: 122  PWQAVKRVLRYISGT 126
             W+AVK +LRY+ GT
Sbjct: 1149 HWEAVKWILRYLRGT 1161

BLAST of Cmc11g0285941 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 0

Query: 5    KFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSI 64
            KF + DL  + +F+G +I   E +  +++  YV+ +L K  + +     +P     +  +
Sbjct: 1111 KFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYEL 1170

Query: 65   TNGIPLEDLFI-YQSTFGALQY-LTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRYI 124
             N    ED     +S  G L Y +  TR D++  VN LS++  K     WQ +KRVLRY+
Sbjct: 1171 LNSD--EDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYL 1230

Query: 125  SGTKHYDILF 133
             GT    ++F
Sbjct: 1231 KGTIDMKLIF 1238

BLAST of Cmc11g0285941 vs. ExPASy TrEMBL
Match: A0A5D3CP94 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002430 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.9e-61
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK
Sbjct: 357 MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 416

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR--- 120
           HLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR   
Sbjct: 417 HLSITNGIPLEDPFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRRRL 476

Query: 121 --VLRYISGTKHYDI 131
              L + + TKH +I
Sbjct: 477 QPNLVFHARTKHIEI 491

BLAST of Cmc11g0285941 vs. ExPASy TrEMBL
Match: A0A5A7TWM4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004070 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.9e-61
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK
Sbjct: 511 MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 570

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR--- 120
           HLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKR   
Sbjct: 571 HLSITNGIPLEDPFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRRRL 630

Query: 121 --VLRYISGTKHYDI 131
              L + + TKH +I
Sbjct: 631 QPNLVFHARTKHIEI 645

BLAST of Cmc11g0285941 vs. ExPASy TrEMBL
Match: A0A5A7US38 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003580 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK
Sbjct: 90  MLDAKFALKDLGPLHYFLRFQIHYLESSFIMNQEKYIDDLLHKLQLTDLKPASSPSVLGK 149

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLR 120
            LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHLSQFLQKPT L WQAVKRVLR
Sbjct: 150 RLSISDGIPLKDPFMYQSTIVALQYLTNTRSNISYIVNHLSQFLQKPTDLHWQAVKRVLR 209

Query: 121 YISGTKHYDILF 133
           YISGTKHY ILF
Sbjct: 210 YISGTKHYGILF 221

BLAST of Cmc11g0285941 vs. ExPASy TrEMBL
Match: A0A5D3E251 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001610 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGK 60
           MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK
Sbjct: 90  MLDAKFALKDLGPLHYFLRFQIHYLESSFIMNQEKYIDDLLHKLQLTDLKPASSPSVLGK 149

Query: 61  HLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLR 120
            LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHLSQFLQKPT L WQAVKRVLR
Sbjct: 150 RLSISDGIPLKDPFMYQSTIVALQYLTNTRSNISYIVNHLSQFLQKPTDLHWQAVKRVLR 209

Query: 121 YISGTKHYDILF 133
           YISGTKHY ILF
Sbjct: 210 YISGTKHYGILF 221

BLAST of Cmc11g0285941 vs. ExPASy TrEMBL
Match: A0A5D3BWM8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001330 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.2e-46
Identity = 92/131 (70.23%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 2   LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKH 61
           LD +FALKDLG L YFLGFQ++YLES FI+N+EKY+  LLHK QL DLKPAPSPS +GK+
Sbjct: 92  LDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLHKLQLNDLKPAPSPSAVGKN 151

Query: 62  LSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRY 121
           LS   G PLED F+Y++T GALQYLTNTR DI+YIVN LSQFLQKPT L W+AVKRVL+Y
Sbjct: 152 LSAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIVNQLSQFLQKPTDLHWKAVKRVLKY 211

Query: 122 ISGTKHYDILF 133
           +SGTK + ++F
Sbjct: 212 LSGTKSFGLMF 222

BLAST of Cmc11g0285941 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 2   LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKH 61
           L   F++KDLGP+HYFLG QI    S   +++ KY E +L+   + D KP  +P  L  +
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 62  LSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRY 121
            S++      D   ++S  GALQYLT TR DISY VN + Q + +PT   +  +KRVLRY
Sbjct: 87  SSVSTA-KYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 122 ISGT 126
           + GT
Sbjct: 147 VKGT 149

BLAST of Cmc11g0285941 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-16
Identity = 49/120 (40.83%), Postives = 62/120 (51.67%), Query Frame = 0

Query: 6   FALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSIT 65
           F L+DLGPL YFLG +I    +   + + KY   LL +  L   KP+  P       S  
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367

Query: 66  NGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGT 125
           +G    D   Y+   G L YL  TRLDIS+ VN LSQF + P     QAV ++L YI GT
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427

BLAST of Cmc11g0285941 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.8e-04
Identity = 20/41 (48.78%), Postives = 25/41 (60.98%), Query Frame = 0

Query: 85  YLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGT 126
           YLT TR D+++ VN LSQF         QAV +VL Y+ GT
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGT 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK13717.11.8e-6089.63putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0045871.11.8e-6089.63putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYK30173.18.8e-5583.33Copia protein [Cucumis melo var. makuwa][more]
KAA0057477.18.8e-5583.33Copia protein [Cucumis melo var. makuwa][more]
KAA0042448.11.3e-4570.23putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03510.1 putative m... [more]
Match NameE-valueIdentityDescription
Q94HW24.3e-2039.53Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P925192.1e-1942.74Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9ZT942.8e-1937.21Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109784.8e-1133.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041469.9e-0930.00Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A5D3CP948.9e-6189.63Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TWM48.9e-6189.63Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7US384.3e-5583.33Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003580... [more]
A0A5D3E2514.3e-5583.33Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001610... [more]
A0A5D3BWM86.2e-4670.23Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
ATMG00810.11.5e-2042.74DNA/RNA polymerases superfamily protein [more]
AT4G23160.16.6e-1640.83cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00240.15.8e-0448.78Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..125
NoneNo IPR availablePANTHERPTHR11439:SF335SUBFAMILY NOT NAMEDcoord: 7..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0285941.1Cmc11g0285941.1mRNA