Cmc11g0285881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0285881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 1266123 .. 1266704 (+)
RNA-Seq Expression	Cmc11g0285881
Synteny	Cmc11g0285881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGAACTTGGGGCATCTTGGCAAGCGTAGTGGATATTAGAGAGCCAGAAGTTTCCCTATCGTCTGAACCAGTGGTGAGGGAGTACCCCGACGTTTTCCCAGACGAACTCCCAGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCCATCGAGTTAGAGCCGGGCACTGCCCCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCTCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACGGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGATGGTGACATTCCCAAGACGGCCTTTCGATCGAGGTACGGACATTACTAA

mRNA sequence

ATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGAACTTGGGGCATCTTGGCAAGCGTAGTGGATATTAGAGAGCCAGAAGTTTCCCTATCGTCTGAACCAGTGGTGAGGGAGTACCCCGACGTTTTCCCAGACGAACTCCCAGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCCATCGAGTTAGAGCCGGGCACTGCCCCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCTCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACGGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGATGGTGACATTCCCAAGACGGCCTTTCGATCGAGGTACGGACATTACTAA

Coding sequence (CDS)

ATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGAACTTGGGGCATCTTGGCAAGCGTAGTGGATATTAGAGAGCCAGAAGTTTCCCTATCGTCTGAACCAGTGGTGAGGGAGTACCCCGACGTTTTCCCAGACGAACTCCCAGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCCATCGAGTTAGAGCCGGGCACTGCCCCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCTCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACGGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGATGGTGACATTCCCAAGACGGCCTTTCGATCGAGGTACGGACATTACTAA

Protein sequence

MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHY

Homology

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BLAST of Cmc11g0285881 vs. NCBI nr
Match: KAA0042912.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 2.7e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 383 MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 442

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 443 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 502

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 503 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 562

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 563 IPKTAFRSRYGHY 575

[Close]

BLAST of Cmc11g0285881 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 471 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 530

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 531 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 590

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 591 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 650

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 651 IPKTAFRSRYGHY 663

[Close]

BLAST of Cmc11g0285881 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1    MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
            MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 1135 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 1194

Query: 61   PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
            PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 1195 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 1254

Query: 121  KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
            KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 1255 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 1314

Query: 181  IPKTAFRSRYGHY 194
            IPKTAFRSRYGHY
Sbjct: 1315 IPKTAFRSRYGHY 1327

[Close]

BLAST of Cmc11g0285881 vs. NCBI nr
Match: KAA0025848.1 (pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo var. makuwa] >KAA0036593.1 pol protein [Cucumis melo var. makuwa] >KAA0036739.1 pol protein [Cucumis melo var. makuwa] >KAA0037408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 530 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 589

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 590 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 649

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 650 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 709

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 710 IPKTAFRSRYGHY 722

[Close]

BLAST of Cmc11g0285881 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1    MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
            MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 852  MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 911

Query: 61   PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
            PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 912  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 971

Query: 121  KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
            KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 972  KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 1031

Query: 181  IPKTAFRSRYGHY 194
            IPKTAFRSRYGHY
Sbjct: 1032 IPKTAFRSRYGHY 1044

[Close]

BLAST of Cmc11g0285881 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-27
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 0


Query: 12  KASKLLSQGTWGILASVVDIREPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 71
           +AS L   G +  + S +   EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 579

Query: 72  EVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 131
           +++       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 580 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 639

Query: 132 FVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIR 191
            V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ + 
Sbjct: 640 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPME 699

Query: 192 DGDIPKTAFRSRYGHY 194
             D  KTAF +  G Y
Sbjct: 700 PKDRYKTAFVTPSGKY 713

[Close]

BLAST of Cmc11g0285881 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-27
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 0


Query: 12  KASKLLSQGTWGILASVVDIREPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 71
           +AS L   G +  + S +   EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 605

Query: 72  EVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 131
           +++       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 606 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 665

Query: 132 FVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIR 191
            V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ + 
Sbjct: 666 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPME 725

Query: 192 DGDIPKTAFRSRYGHY 194
             D  KTAF +  G Y
Sbjct: 726 PKDRYKTAFVTPSGKY 739

[Close]

BLAST of Cmc11g0285881 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-23
Identity = 57/163 (34.97%), Postives = 96/163 (58.90%), Query Frame = 0


Query: 31  IREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAE 90
           ++EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P +
Sbjct: 369 VKEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 428

Query: 91  LKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPR 150
           ++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP 
Sbjct: 429 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 488

Query: 151 IDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 192
           I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G
Sbjct: 489 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 527

[Close]

BLAST of Cmc11g0285881 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-23
Identity = 57/163 (34.97%), Postives = 96/163 (58.90%), Query Frame = 0


Query: 31  IREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAE 90
           ++EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P +
Sbjct: 369 VKEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 428

Query: 91  LKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPR 150
           ++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP 
Sbjct: 429 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 488

Query: 151 IDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 192
           I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G
Sbjct: 489 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 527

[Close]

BLAST of Cmc11g0285881 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-23
Identity = 57/163 (34.97%), Postives = 96/163 (58.90%), Query Frame = 0


Query: 31  IREPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPYRMAPAE 90
           ++EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P +
Sbjct: 369 VKEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 428

Query: 91  LKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPR 150
           ++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP 
Sbjct: 429 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 488

Query: 151 IDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 192
           I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G
Sbjct: 489 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 527

[Close]

BLAST of Cmc11g0285881 vs. ExPASy TrEMBL
Match: A0A5A7THM7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004320 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.3e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 383 MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 442

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 443 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 502

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 503 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 562

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 563 IPKTAFRSRYGHY 575

[Close]

BLAST of Cmc11g0285881 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 530 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 589

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 590 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 649

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 650 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 709

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 710 IPKTAFRSRYGHY 722

[Close]

BLAST of Cmc11g0285881 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 530 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 589

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 590 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 649

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 650 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 709

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 710 IPKTAFRSRYGHY 722

[Close]

BLAST of Cmc11g0285881 vs. ExPASy TrEMBL
Match: A0A5A7TEQ2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00410 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 530 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 589

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 590 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 649

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 650 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 709

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 710 IPKTAFRSRYGHY 722

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BLAST of Cmc11g0285881 vs. ExPASy TrEMBL
Match: A0A5A7TSL0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001340 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPP 60
           MVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVSLSSEPVVREYPDVFPDELPGLPP
Sbjct: 530 MVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPP 589

Query: 61  PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 120
           PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK
Sbjct: 590 PREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVK 649

Query: 121 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 180
           KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD
Sbjct: 650 KKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGD 709

Query: 181 IPKTAFRSRYGHY 194
           IPKTAFRSRYGHY
Sbjct: 710 IPKTAFRSRYGHY 722

The following BLAST results are available for this feature:

BLAST of Cmc11g0285881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042912.1	2.7e-105	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031437.1	3.6e-105	99.48	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	3.6e-105	99.48	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025848.1	3.6e-105	99.48	pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo v...	[more]
TYK20443.1	3.6e-105	99.48	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0285881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.1e-27	35.71	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.1e-27	35.71	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.7e-23	34.97	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.7e-23	34.97	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.7e-23	34.97	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0285881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THM7	1.3e-105	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44...	[more]
A0A5D3CQB5	1.7e-105	99.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	1.7e-105	99.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TEQ2	1.7e-105	99.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]
A0A5A7TSL0	1.7e-105	99.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]

BLAST of Cmc11g0285881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 65..193 e-value: 1.4E-55 score: 189.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 32..155
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 32..155
None	No IPR available	CDD	cd01647	RT_LTR	coord: 103..193 e-value: 9.97653E-51 score: 159.683
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 119..187 e-value: 7.9E-8 score: 32.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 144..171 e-value: 1.4E-55 score: 189.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 43..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0285881.1	Cmc11g0285881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0036402	proteasome-activating activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding