Cmc10g0281881 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0281881
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr10: 20805857 .. 20806342 (+)
RNA-Seq ExpressionCmc10g0281881
SyntenyCmc10g0281881
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAACATTCCCTATGCCTCTGCTGTTGGAAGTCTGATGTATGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTGGGGATTGTTAGTAGATATCAGCCCAATCCTGGACGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATTCTTGTGTATGGTTCTGAGGATCTAATCCTTACTGGATACACTAACTCCAATTTTCAAACTAATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTTACTCTGAATGGAGGAGTAGTAATATGGAGAAGCATAAAACAATCTTGTATTGTCGACTCCACTATGGAAGCTGAATATGTAGCTACCTGTGAAGCAGCAAAAGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTGTATTGTGGCAATAGTGGTGCAGTTGCAAATTAA

mRNA sequence

ATGAGTAACATTCCCTATGCCTCTGCTGTTGGAAGTCTGATGTATGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTGGGGATTGTTAGTAGATATCAGCCCAATCCTGGACGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATTCTTGTGTATGGTTCTGAGGATCTAATCCTTACTGGATACACTAACTCCAATTTTCAAACTAATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTTACTCTGAATGGAGGAGTAGTAATATGGAGAAGCATAAAACAATCTTGTATTGTCGACTCCACTATGGAAGCTGAATATGTAGCTACCTGTGAAGCAGCAAAAGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTGTATTGTGGCAATAGTGGTGCAGTTGCAAATTAA

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCCTCTGCTGTTGGAAGTCTGATGTATGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTGGGGATTGTTAGTAGATATCAGCCCAATCCTGGACGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATTCTTGTGTATGGTTCTGAGGATCTAATCCTTACTGGATACACTAACTCCAATTTTCAAACTAATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTTACTCTGAATGGAGGAGTAGTAATATGGAGAAGCATAAAACAATCTTGTATTGTCGACTCCACTATGGAAGCTGAATATGTAGCTACCTGTGAAGCAGCAAAAGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTGTATTGTGGCAATAGTGGTGCAGTTGCAAATTAA

Protein sequence

MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYILVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYVATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN
Homology
BLAST of Cmc10g0281881 vs. NCBI nr
Match: TYK03174.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 4.8e-87
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI
Sbjct: 638 MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 697

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVV+WRSIKQSCIVDSTMEAEYV
Sbjct: 698 LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVVWRSIKQSCIVDSTMEAEYV 757

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN
Sbjct: 758 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 798

BLAST of Cmc10g0281881 vs. NCBI nr
Match: KAA0056341.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 4.8e-87
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI
Sbjct: 664 MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 723

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVV+WRSIKQSCIVDSTMEAEYV
Sbjct: 724 LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVVWRSIKQSCIVDSTMEAEYV 783

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN
Sbjct: 784 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 824

BLAST of Cmc10g0281881 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.8 bits (769), Expect = 6.9e-78
Identity = 145/161 (90.06%), Postives = 151/161 (93.79%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNIPYA AVGSLMYAMLCTRPDICYSVGIVSRYQ NPGRDHWT VKNILKYLRRTKDY+
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGS+DLIL GYT+S+FQT+KDARKSTSGSVFTLNGG V+WRSIKQSCI DSTME EYV
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 270

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           A CEAAKEAVWLKKFLTDLE VPNMHLPITLYC NSGAVAN
Sbjct: 271 AACEAAKEAVWLKKFLTDLEGVPNMHLPITLYCDNSGAVAN 311

BLAST of Cmc10g0281881 vs. NCBI nr
Match: KAA0034962.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21317.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 146/161 (90.68%), Postives = 152/161 (94.41%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNI YASAVGSLMYAMLCTRPDICY VGIVSRYQ NP RDHWTTVKNILKYLRRTKDY+
Sbjct: 47  MSNILYASAVGSLMYAMLCTRPDICYLVGIVSRYQSNPRRDHWTTVKNILKYLRRTKDYM 106

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGS+D ILTGYT+SNFQT+KDARKSTSGSVFTLNGG V+W SIKQSCIV+STMEAEYV
Sbjct: 107 LVYGSKDRILTGYTDSNFQTDKDARKSTSGSVFTLNGGAVVWGSIKQSCIVESTMEAEYV 166

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           A CEAAKEAVWLKKFLTDLEVVPNMHLPITLYC NSGAVAN
Sbjct: 167 AACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVAN 207

BLAST of Cmc10g0281881 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 140/161 (86.96%), Postives = 154/161 (95.65%), Query Frame = 0

Query: 1    MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
            M NIPY+SAVGSLMYAMLCTRPDICYSVGIVSRYQ NPGRDHWT VKNILKYLRRT++Y+
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158

Query: 61   LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
            LVYG++DLILTGYT+S+FQ++KDARKSTSGSVFTLNGG V+WRS+KQ+CI DSTMEAEYV
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYV 1218

Query: 121  ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
            A CEAAKEAVWL+KFLTDLEVVPNMHLPITLYC NSGAVAN
Sbjct: 1219 AACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVAN 1259

BLAST of Cmc10g0281881 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-39
Identity = 77/159 (48.43%), Postives = 110/159 (69.18%), Query Frame = 0

Query: 1    MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
            M+ +PY+SAVGSLMYAM+CTRPDI ++VG+VSR+  NPG++HW  VK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
            L +G  D IL GYT+++   + D RKS++G +FT +GG + W+S  Q C+  ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAV 160
            A  E  KE +WLK+FL +L +    ++   +YC +  A+
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAI 1261

BLAST of Cmc10g0281881 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.6e-27
Identity = 59/133 (44.36%), Postives = 90/133 (67.67%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           M N+PY SAVG++MY M+ TRPD+  +VG++S++  +P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSEDLI-LTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEY 120
           L +       L GY+++++  + ++R+STSG +F LNGG V WRS KQ  +  S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VATCEAAKEAVWL 133
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

BLAST of Cmc10g0281881 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 58/162 (35.80%), Postives = 96/162 (59.26%), Query Frame = 0

Query: 3    NIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYILV 62
            N P  S +G LMY MLCTRPD+  +V I+SRY      + W  +K +L+YL+ T D  L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSE---DLILTGYTNSNFQTNKDARKSTSGSVFTL-NGGVVIWRSIKQSCIVDSTMEAE 122
            +      +  + GY +S++  ++  RKST+G +F + +  ++ W + +Q+ +  S+ EAE
Sbjct: 1238 FKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAE 1297

Query: 123  YVATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVA 161
            Y+A  EA +EA+WLK  LT + +   +  PI +Y  N G ++
Sbjct: 1298 YMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCIS 1337

BLAST of Cmc10g0281881 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.2e-18
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 0

Query: 6    YASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDY-ILVYG 65
            Y   VGSL Y +  TRPD+ Y+V  +S+Y   P  DHW  +K +L+YL  T D+ I +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYVATCE 125
               L L  Y+++++  + D   ST+G +  L    + W S KQ  +V S+ EAEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGA 159
             + E  W+   LT+L +   +  P  +YC N GA
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGA 1378

BLAST of Cmc10g0281881 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 0

Query: 6    YASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDY-ILVYG 65
            Y   VGSL Y +  TRPDI Y+V  +S++   P  +H   +K IL+YL  T ++ I +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYVATCE 125
               L L  Y+++++  +KD   ST+G +  L    + W S KQ  +V S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGA 159
             + E  W+   LT+L +   +  P  +YC N GA
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGA 1395

BLAST of Cmc10g0281881 vs. ExPASy TrEMBL
Match: A0A5A7US12 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G00330 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.3e-87
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI
Sbjct: 664 MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 723

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVV+WRSIKQSCIVDSTMEAEYV
Sbjct: 724 LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVVWRSIKQSCIVDSTMEAEYV 783

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN
Sbjct: 784 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 824

BLAST of Cmc10g0281881 vs. ExPASy TrEMBL
Match: A0A5D3BVG4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00790 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.3e-87
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI
Sbjct: 638 MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 697

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVV+WRSIKQSCIVDSTMEAEYV
Sbjct: 698 LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVVWRSIKQSCIVDSTMEAEYV 757

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN
Sbjct: 758 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 798

BLAST of Cmc10g0281881 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.4e-78
Identity = 145/161 (90.06%), Postives = 151/161 (93.79%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNIPYA AVGSLMYAMLCTRPDICYSVGIVSRYQ NPGRDHWT VKNILKYLRRTKDY+
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGS+DLIL GYT+S+FQT+KDARKSTSGSVFTLNGG V+WRSIKQSCI DSTME EYV
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 270

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           A CEAAKEAVWLKKFLTDLE VPNMHLPITLYC NSGAVAN
Sbjct: 271 AACEAAKEAVWLKKFLTDLEGVPNMHLPITLYCDNSGAVAN 311

BLAST of Cmc10g0281881 vs. ExPASy TrEMBL
Match: A0A5D3DCF0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00260 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.5e-78
Identity = 146/161 (90.68%), Postives = 152/161 (94.41%), Query Frame = 0

Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
           MSNI YASAVGSLMYAMLCTRPDICY VGIVSRYQ NP RDHWTTVKNILKYLRRTKDY+
Sbjct: 47  MSNILYASAVGSLMYAMLCTRPDICYLVGIVSRYQSNPRRDHWTTVKNILKYLRRTKDYM 106

Query: 61  LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
           LVYGS+D ILTGYT+SNFQT+KDARKSTSGSVFTLNGG V+W SIKQSCIV+STMEAEYV
Sbjct: 107 LVYGSKDRILTGYTDSNFQTDKDARKSTSGSVFTLNGGAVVWGSIKQSCIVESTMEAEYV 166

Query: 121 ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
           A CEAAKEAVWLKKFLTDLEVVPNMHLPITLYC NSGAVAN
Sbjct: 167 AACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVAN 207

BLAST of Cmc10g0281881 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.7e-77
Identity = 140/161 (86.96%), Postives = 154/161 (95.65%), Query Frame = 0

Query: 1    MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYI 60
            M NIPY+SAVGSLMYAMLCTRPDICYSVGIVSRYQ NPGRDHWT VKNILKYLRRT++Y+
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158

Query: 61   LVYGSEDLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYV 120
            LVYG++DLILTGYT+S+FQ++KDARKSTSGSVFTLNGG V+WRS+KQ+CI DSTMEAEYV
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYV 1218

Query: 121  ATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAVAN 162
            A CEAAKEAVWL+KFLTDLEVVPNMHLPITLYC NSGAVAN
Sbjct: 1219 AACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVAN 1259

BLAST of Cmc10g0281881 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-18
Identity = 52/155 (33.55%), Postives = 86/155 (55.48%), Query Frame = 0

Query: 6   YASAVGSLMYAMLCTRPDICYSVGIVSRYQPNPGRDHWTTVKNILKYLRRTKDYILVYGS 65
           Y   +G LMY  + TR DI ++V  +S++   P   H   V  IL Y++ T    L Y S
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  E-DLILTGYTNSNFQTNKDARKSTSGSVFTLNGGVVIWRSIKQSCIVDSTMEAEYVATCE 125
           + ++ L  +++++FQ+ KD R+ST+G    L   ++ W+S KQ  +  S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 AAKEAVWLKKFLTDLEVVPNMHLPITLYCGNSGAV 160
           A  E +WL +F  +L++   +  P  L+C N+ A+
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAI 529

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03174.14.8e-8799.38gag/pol protein [Cucumis melo var. makuwa][more]
KAA0056341.14.8e-8799.38gag/pol protein [Cucumis melo var. makuwa][more]
TYK06386.16.9e-7890.06gag/pol protein [Cucumis melo var. makuwa][more]
KAA0034962.11.5e-7790.68gag/pol protein [Cucumis melo var. makuwa] >TYK21317.1 gag/pol protein [Cucumis ... [more]
ADJ18449.13.4e-7786.96gag/pol protein, partial [Bryonia dioica][more]
Match NameE-valueIdentityDescription
P109781.7e-3948.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV727.6e-2744.36Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
P041461.7e-2335.80Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT942.2e-1835.06Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW21.6e-1634.42Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5A7US122.3e-8799.38Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G0033... [more]
A0A5D3BVG42.3e-8799.38Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00790... [more]
A0A5D3C7T23.4e-7890.06Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081... [more]
A0A5D3DCF07.5e-7890.68Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G002... [more]
E2GK511.7e-7786.96Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.13.9e-1833.55cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 85..158
NoneNo IPR availablePANTHERPTHR11439:SF273RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOGcoord: 85..158
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 71..160
e-value: 2.42725E-36
score: 120.651

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0281881.1Cmc10g0281881.1mRNA