Cmc10g0281301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0281301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr10: 19628319 .. 19628969 (+)
RNA-Seq Expression	Cmc10g0281301
Synteny	Cmc10g0281301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACACGGATGGATAGGCGAACATTCGCAATTCTATGTCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGATCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTATTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGTGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATTGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGCAGCAAACTCACGGATCCTACGTGATGCGATTTTACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

mRNA sequence

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACACGGATGGATAGGCGAACATTCGCAATTCTATGTCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGATCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTATTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGTGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATTGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGCAGCAAACTCACGGATCCTACGTGATGCGATTTTACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Coding sequence (CDS)

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACACGGATGGATAGGCGAACATTCGCAATTCTATGTCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGATCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTATTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATAATTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGTGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATTGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGCAGCAAACTCACGGATCCTACGTGATGCGATTTTACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Protein sequence

MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAANSRILRDAILRENGLQVPKGISSL

Homology

[Close]

BLAST of Cmc10g0281301 vs. NCBI nr
Match: TYK27061.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. NCBI nr
Match: KAA0064809.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 6.4e-95
Identity = 182/212 (85.85%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHE DLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHEPDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. NCBI nr
Match: KAA0056564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 6.4e-95
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           N LGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NYLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAILRENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAILRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.2e-96
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. ExPASy TrEMBL
Match: A0A5D3DTQ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00550 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.2e-96
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.2e-96
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. ExPASy TrEMBL
Match: A0A5A7VH63 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001170 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.1e-95
Identity = 182/212 (85.85%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHE DLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHEPDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           NCLGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAI RENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. ExPASy TrEMBL
Match: A0A5A7UMZ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00690 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.1e-95
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNS 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDF 180
                           N LGALDGTYIKVNVPAGD PTFRTRKGEIATNVLGVCDTKGDF
Sbjct: 146 ----------------NYLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWEGSAANSRILRDAILRENGLQVPKG 213
           VYVLAGWEGSAA+SRILRDAILRENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAILRENGLQVPKG 211

[Close]

BLAST of Cmc10g0281301 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-26
Identity = 68/204 (33.33%), Postives = 100/204 (49.02%), Query Frame = 0


Query: 9   CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 68
           C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  GETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSPLRTSHLI 128
           GET+SRHFN VL AV+                             I  D+  P   S  +
Sbjct: 102 GETISRHFNNVLNAVI----------------------------AISKDFFQPNSNSDTL 161

Query: 129 QRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWE 188
           +      ++C+G +D  +I V V   +   FR   G +  NVL        F YVLAGWE
Sbjct: 162 ENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWE 217

Query: 189 GSAANSRILRDAILRENGLQVPKG 213
           GSA++ ++L  A+ R N LQVP+G
Sbjct: 222 GSASDQQVLNAALTRRNKLQVPQG 217

[Close]

BLAST of Cmc10g0281301 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 130 RVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 189
           R+Y   ++C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEG
Sbjct: 17  RLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEG 76

Query: 190 SAANSRILRDAILR-ENGLQVPK 212
           SA +S++L DA+ R  N L VP+
Sbjct: 77  SAHDSKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc10g0281301 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-15
Identity = 57/209 (27.27%), Postives = 90/209 (43.06%), Query Frame = 0


Query: 2   IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           + +    C Q  RM    F  LC++L+    L  T  + +EE VAMFL +  H+   R +
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSP 121
              F R+ ETV R F  VL A   L  + I+ P                    +  Y  P
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPTR------------------QELYRIP 178

Query: 122 LRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDFV 181
            R   + QR +      +GA+DGT++ V V       +  R    + N++ +CD K  F 
Sbjct: 179 ERL-QVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFT 238

Query: 182 YVLAGWEGSAANSRILRDAILRENGLQVP 211
           Y+  G  GS  ++ +L+ A   ++   +P
Sbjct: 239 YIWNGAPGSCYDTAVLQIAQQSDSEFPLP 248

[Close]

BLAST of Cmc10g0281301 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-11
Identity = 56/209 (26.79%), Postives = 84/209 (40.19%), Query Frame = 0


Query: 2   IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVDYNSP 121
              F  + ET+ R F+ VL A+ RL                             V+Y  P
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERL----------------------------AVEYIRP 136

Query: 122 LRTSHLIQRVYFNLQNCLGALDGTYIKVNVPAGDWPTFRTRKGEIATNVLGVCDTKGDFV 181
            +   L + +   LQ+     D  Y         WP      G  + NVL +CD    F 
Sbjct: 137 RKVEEL-RAISNRLQD-----DTRY---------WPFLMDLLGIASFNVLAICDLDMLFT 182

Query: 182 YVLAGWEGSAANSRILRDAILRENGLQVP 211
           Y   G  GS  ++R+L  AI  +    VP
Sbjct: 197 YCFVGMAGSTHDARVLSAAISDDPLFHVP 182

The following BLAST results are available for this feature:

BLAST of Cmc10g0281301 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27061.1	1.7e-95	86.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	1.7e-95	86.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	1.7e-95	86.32	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]
KAA0064809.1	6.4e-95	85.85	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056564.1	6.4e-95	86.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0281301 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc10g0281301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7X8	8.2e-96	86.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DTQ4	8.2e-96	86.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	8.2e-96	86.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VH63	3.1e-95	85.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UMZ4	3.1e-95	86.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc10g0281301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	5.2e-26	33.33	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	4.8e-16	45.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	3.1e-15	27.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	4.7e-11	26.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 142..204 e-value: 2.4E-6 score: 27.3
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 136..208 coord: 1..110
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 136..208 coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0281301.1	Cmc10g0281301.1	mRNA