Cmc10g0281041 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0281041
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr10: 19176178 .. 19176768 (+)
RNA-Seq ExpressionCmc10g0281041
SyntenyCmc10g0281041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATGTCCTTCAAGGGATCATTTCGGAGCAGCAAAACAGGTTATGCGATACATTGTTGGAACTATAGAATATGGCATTTGGTATTCTAAAGTTTTTTATTTCAAATTATGCGGGTTCACAGATAGTGATTGGGCGAGCTCCTTGGATGATAGGCGAAGTGTTTCAACAAATGTTTTGACTTTAGGGTCAGAAGTTATTACTTGGAGCTCGAAGATACAAGCAACAGTTGCTTTATCATCTTCGGAAGCAGAATATGCTGTAGCAACTTCAGCAGCATGTCAGGCAATTTGGTTGCGAAGAATGCTAACAGAACTCCAACATGAGCAAGAGGGAGCAACTGTGATATTCTGCGACAGCAAAGCAACGATCTCAATGACAAAAAATCCGCCATTTCATAGCCGGAAAAGCACATTGACATTCACTTTCATTTTATTCGTTGCAAAGGAAGAAGTTTCTCTGTCATATTGCAGCACACATGAGCAGTGCACTGATATTCTCACAAAAGTTTTGTCAAATGAGAAGTTATGTTACTTTAGAGCTATGATGGGTATTAGCAAATTTGAATCAAGAGGGAATATTGAAGACTGA

mRNA sequence

ATGCAATGTCCTTCAAGGGATCATTTCGGAGCAGCAAAACAGGTTATGCGATACATTGTTGGAACTATAGAATATGGCATTTGGTATTCTAAAGTTTTTTATTTCAAATTATGCGGGTTCACAGATAGTGATTGGGCGAGCTCCTTGGATGATAGGCGAAGTGTTTCAACAAATGTTTTGACTTTAGGGTCAGAAGTTATTACTTGGAGCTCGAAGATACAAGCAACAGTTGCTTTATCATCTTCGGAAGCAGAATATGCTGTAGCAACTTCAGCAGCATGTCAGGCAATTTGGTTGCGAAGAATGCTAACAGAACTCCAACATGAGCAAGAGGGAGCAACTGTGATATTCTGCGACAGCAAAGCAACGATCTCAATGACAAAAAATCCGCCATTTCATAGCCGGAAAAGCACATTGACATTCACTTTCATTTTATTCGTTGCAAAGGAAGAAGTTTCTCTGTCATATTGCAGCACACATGAGCAGTGCACTGATATTCTCACAAAAGTTTTGTCAAATGAGAAGTTATGTTACTTTAGAGCTATGATGGGTATTAGCAAATTTGAATCAAGAGGGAATATTGAAGACTGA

Coding sequence (CDS)

ATGCAATGTCCTTCAAGGGATCATTTCGGAGCAGCAAAACAGGTTATGCGATACATTGTTGGAACTATAGAATATGGCATTTGGTATTCTAAAGTTTTTTATTTCAAATTATGCGGGTTCACAGATAGTGATTGGGCGAGCTCCTTGGATGATAGGCGAAGTGTTTCAACAAATGTTTTGACTTTAGGGTCAGAAGTTATTACTTGGAGCTCGAAGATACAAGCAACAGTTGCTTTATCATCTTCGGAAGCAGAATATGCTGTAGCAACTTCAGCAGCATGTCAGGCAATTTGGTTGCGAAGAATGCTAACAGAACTCCAACATGAGCAAGAGGGAGCAACTGTGATATTCTGCGACAGCAAAGCAACGATCTCAATGACAAAAAATCCGCCATTTCATAGCCGGAAAAGCACATTGACATTCACTTTCATTTTATTCGTTGCAAAGGAAGAAGTTTCTCTGTCATATTGCAGCACACATGAGCAGTGCACTGATATTCTCACAAAAGTTTTGTCAAATGAGAAGTTATGTTACTTTAGAGCTATGATGGGTATTAGCAAATTTGAATCAAGAGGGAATATTGAAGACTGA

Protein sequence

MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTHEQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED
Homology
BLAST of Cmc10g0281041 vs. NCBI nr
Match: KAA0038903.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 308.9 bits (790), Expect = 3.1e-80
Identity = 161/199 (80.90%), Postives = 168/199 (84.42%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQC SRDHFGAAK+VMRYI GTIEYGIWYSKV  FKLCGFTDS+W SSLDDRRSVS NV 
Sbjct: 30  MQCSSRDHFGAAKRVMRYIAGTIEYGIWYSKVSDFKLCGFTDSNWVSSLDDRRSVSANVF 89

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
           TLG  VITWSSK QATV LSSSEAEYA  TSAACQAIWL+RMLTELQHEQEGATVIFCD+
Sbjct: 90  TLGLGVITWSSKKQATVVLSSSEAEYAATTSAACQAIWLQRMLTELQHEQEGATVIFCDN 149

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISMTKN  FHSR     + F FI   VA+EE SLSYCSTHEQ  DILTK LS EK C
Sbjct: 150 KATISMTKNSTFHSRTKHIDIHFHFIRDLVAEEEFSLSYCSTHEQWADILTKALSKEKFC 209

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESRG+IED
Sbjct: 210 YFRAMMGISKFESRGSIED 228

BLAST of Cmc10g0281041 vs. NCBI nr
Match: KAA0056486.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK29036.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 2.0e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 41  TDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLR 100
           TDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLR
Sbjct: 52  TDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLR 111

Query: 101 RMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTH 160
           RMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTH
Sbjct: 112 RMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTH 171

Query: 161 EQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED 197
           EQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED
Sbjct: 172 EQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED 207

BLAST of Cmc10g0281041 vs. NCBI nr
Match: KAA0056051.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-78
Identity = 161/199 (80.90%), Postives = 167/199 (83.92%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQ PSRDHF AAK+VMRYI GTIEYGIW SKV  FKLCGFTDSDWASSL DRRSVS NV 
Sbjct: 287 MQRPSRDHFRAAKRVMRYIAGTIEYGIWCSKVSNFKLCGFTDSDWASSLGDRRSVSANVF 346

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
           TLG  VITWS K QAT ALSSSEAEYA ATSAACQAIWLRRMLTELQHEQEGATVIFCD+
Sbjct: 347 TLGLGVITWSLKKQATAALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFCDN 406

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISMTKNP FHSR     + F FI   VAKEEVSL+YCSTH+Q  DILTK LS EK C
Sbjct: 407 KATISMTKNPTFHSRTKHIDIRFHFIRDLVAKEEVSLTYCSTHKQWADILTKALSKEKFC 466

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESR +IED
Sbjct: 467 YFRAMMGISKFESRWSIED 485

BLAST of Cmc10g0281041 vs. NCBI nr
Match: KAA0058475.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07272.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.7e-66
Identity = 144/199 (72.36%), Postives = 149/199 (74.87%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQCPSRDHFGAAK+VMRYI GTIEYGIW                        RSVSTNV 
Sbjct: 32  MQCPSRDHFGAAKRVMRYIAGTIEYGIW------------------------RSVSTNVF 91

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
           TLGS V TW SK QATVALSSSEAEYA ATS  CQAIWLRRMLTELQHEQEGATVIFCD+
Sbjct: 92  TLGSGVNTWRSKKQATVALSSSEAEYAAATSTTCQAIWLRRMLTELQHEQEGATVIFCDN 151

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISM KNP FHS+     + F FI   VAKEEVSLSYCSTHEQ TDILTK LS EK C
Sbjct: 152 KATISMMKNPTFHSQTKHIDIRFHFIRDLVAKEEVSLSYCSTHEQWTDILTKTLSKEKFC 206

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESRG IE+
Sbjct: 212 YFRAMMGISKFESRGTIEE 206

BLAST of Cmc10g0281041 vs. NCBI nr
Match: KAA0061309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK09888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 140/199 (70.35%), Postives = 146/199 (73.37%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQ PSRDHFGAAK+VMRYI GTIEYGIWYSKV  F+LCGFTDSDWASS DDRR       
Sbjct: 234 MQRPSRDHFGAAKRVMRYIAGTIEYGIWYSKVSDFQLCGFTDSDWASSFDDRR------- 293

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
                                 +AEYA ATSAACQAIWLRRMLTELQHEQEGATVIFCD+
Sbjct: 294 ----------------------KAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFCDN 353

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISMTKNP FHSR     + F FI   V KEEVSLSYCST EQ  DILTK LS EK C
Sbjct: 354 KATISMTKNPTFHSRTKHIDIRFHFIRDLVVKEEVSLSYCSTDEQWADILTKALSKEKFC 403

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESRG+IED
Sbjct: 414 YFRAMMGISKFESRGSIED 403

BLAST of Cmc10g0281041 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 0

Query: 1    MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
            M  P+ DH+ A K+V+RY+ GT ++GI+  K     L  ++D+DWA   DD  S +  ++
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
             LG   I+WSSK Q  V  SS+EAEY    + + +  W+  +LTEL  +     VI+CD+
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375

Query: 121  KATISMTKNPPFHSRKSTLTFTFILF---VAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
                 +  NP FHSR   +   +      V    + + + STH+Q  D LTK LS     
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435

Query: 181  YFRAMMGISK 188
             F   +G+ K
Sbjct: 1436 NFSRKIGVIK 1445

BLAST of Cmc10g0281041 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-23
Identity = 63/190 (33.16%), Postives = 98/190 (51.58%), Query Frame = 0

Query: 1    MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
            M  P+ +H  A K+++RY+ GT  +GI+  K     L  ++D+DWA   DD  S +  ++
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
             LG   I+WSSK Q  V  SS+EAEY    + + +  W+  +LTEL        VI+CD+
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 121  KATISMTKNPPFHSRKSTLTFTFILF---VAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
                 +  NP FHSR   +   +      V    + + + STH+Q  D LTK LS     
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

Query: 181  YFRAMMGISK 188
             F + +G+++
Sbjct: 1453 NFASKIGVTR 1462

BLAST of Cmc10g0281041 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-21
Identity = 63/189 (33.33%), Postives = 107/189 (56.61%), Query Frame = 0

Query: 1    MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
            ++ P ++H+ A K ++RY+ GT    + +       L G+TD+D A  +D+R+S +  + 
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLF 1199

Query: 61   TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTEL-QHEQEGATVIFCD 120
            T     I+W SK+Q  VALS++EAEY  AT    + IWL+R L EL  H++E   V++CD
Sbjct: 1200 TFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE--YVVYCD 1259

Query: 121  SKATISMTKNPPFHSRKSTLTFTFIL---FVAKEEVSLSYCSTHEQCTDILTKVLSNEKL 180
            S++ I ++KN  +H+R   +   +      V  E + +   ST+E   D+LTKV+   K 
Sbjct: 1260 SQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1319

Query: 181  CYFRAMMGI 186
               + ++G+
Sbjct: 1320 ELCKELVGM 1325

BLAST of Cmc10g0281041 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 61/181 (33.70%), Postives = 95/181 (52.49%), Query Frame = 0

Query: 13   KQVMRYIVGTIEYGIWYSK--VFYFKLCGFTDSDWASSLDDRRSVSTNVLTL-GSEVITW 72
            K+V+RY+ GTI+  + + K   F  K+ G+ DSDWA S  DR+S +  +  +    +I W
Sbjct: 1222 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1281

Query: 73   SSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDSKATISMTKN 132
            ++K Q +VA SS+EAEY     A  +A+WL+ +LT +  + E    I+ D++  IS+  N
Sbjct: 1282 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1341

Query: 133  PPFHSRKSTLTFTFILFVAKEEVS-----LSYCSTHEQCTDILTKVLSNEKLCYFRAMMG 186
            P  H R   +   +    A+E+V      L Y  T  Q  DI TK L   +    R  +G
Sbjct: 1342 PSCHKRAKHIDIKY--HFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLG 1400

BLAST of Cmc10g0281041 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-14
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 3   CPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVLTL 62
           CP+  H+ A K+V+RY+  T  YG+ +++    KL G++D+DWA  ++ RRS S  +  L
Sbjct: 39  CPT--HWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKL 98

Query: 63  GSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWL 100
               ++W SK Q TVALSS+E EY   + A  +A+WL
Sbjct: 99  NGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

BLAST of Cmc10g0281041 vs. ExPASy TrEMBL
Match: A0A5A7T7G8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00710 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 161/199 (80.90%), Postives = 168/199 (84.42%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQC SRDHFGAAK+VMRYI GTIEYGIWYSKV  FKLCGFTDS+W SSLDDRRSVS NV 
Sbjct: 30  MQCSSRDHFGAAKRVMRYIAGTIEYGIWYSKVSDFKLCGFTDSNWVSSLDDRRSVSANVF 89

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
           TLG  VITWSSK QATV LSSSEAEYA  TSAACQAIWL+RMLTELQHEQEGATVIFCD+
Sbjct: 90  TLGLGVITWSSKKQATVVLSSSEAEYAATTSAACQAIWLQRMLTELQHEQEGATVIFCDN 149

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISMTKN  FHSR     + F FI   VA+EE SLSYCSTHEQ  DILTK LS EK C
Sbjct: 150 KATISMTKNSTFHSRTKHIDIHFHFIRDLVAEEEFSLSYCSTHEQWADILTKALSKEKFC 209

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESRG+IED
Sbjct: 210 YFRAMMGISKFESRGSIED 228

BLAST of Cmc10g0281041 vs. ExPASy TrEMBL
Match: A0A5A7UQA6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001520 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.7e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 41  TDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLR 100
           TDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLR
Sbjct: 52  TDSDWASSLDDRRSVSTNVLTLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLR 111

Query: 101 RMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTH 160
           RMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTH
Sbjct: 112 RMLTELQHEQEGATVIFCDSKATISMTKNPPFHSRKSTLTFTFILFVAKEEVSLSYCSTH 171

Query: 161 EQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED 197
           EQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED
Sbjct: 172 EQCTDILTKVLSNEKLCYFRAMMGISKFESRGNIED 207

BLAST of Cmc10g0281041 vs. ExPASy TrEMBL
Match: A0A5A7URA0 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002180 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.8e-79
Identity = 161/199 (80.90%), Postives = 167/199 (83.92%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQ PSRDHF AAK+VMRYI GTIEYGIW SKV  FKLCGFTDSDWASSL DRRSVS NV 
Sbjct: 287 MQRPSRDHFRAAKRVMRYIAGTIEYGIWCSKVSNFKLCGFTDSDWASSLGDRRSVSANVF 346

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
           TLG  VITWS K QAT ALSSSEAEYA ATSAACQAIWLRRMLTELQHEQEGATVIFCD+
Sbjct: 347 TLGLGVITWSLKKQATAALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFCDN 406

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISMTKNP FHSR     + F FI   VAKEEVSL+YCSTH+Q  DILTK LS EK C
Sbjct: 407 KATISMTKNPTFHSRTKHIDIRFHFIRDLVAKEEVSLTYCSTHKQWADILTKALSKEKFC 466

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESR +IED
Sbjct: 467 YFRAMMGISKFESRWSIED 485

BLAST of Cmc10g0281041 vs. ExPASy TrEMBL
Match: A0A5A7UXY4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001700 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 144/199 (72.36%), Postives = 149/199 (74.87%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQCPSRDHFGAAK+VMRYI GTIEYGIW                        RSVSTNV 
Sbjct: 32  MQCPSRDHFGAAKRVMRYIAGTIEYGIW------------------------RSVSTNVF 91

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
           TLGS V TW SK QATVALSSSEAEYA ATS  CQAIWLRRMLTELQHEQEGATVIFCD+
Sbjct: 92  TLGSGVNTWRSKKQATVALSSSEAEYAAATSTTCQAIWLRRMLTELQHEQEGATVIFCDN 151

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISM KNP FHS+     + F FI   VAKEEVSLSYCSTHEQ TDILTK LS EK C
Sbjct: 152 KATISMMKNPTFHSQTKHIDIRFHFIRDLVAKEEVSLSYCSTHEQWTDILTKTLSKEKFC 206

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESRG IE+
Sbjct: 212 YFRAMMGISKFESRGTIEE 206

BLAST of Cmc10g0281041 vs. ExPASy TrEMBL
Match: A0A5D3CF88 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00600 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.0e-66
Identity = 140/199 (70.35%), Postives = 146/199 (73.37%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           MQ PSRDHFGAAK+VMRYI GTIEYGIWYSKV  F+LCGFTDSDWASS DDRR       
Sbjct: 234 MQRPSRDHFGAAKRVMRYIAGTIEYGIWYSKVSDFQLCGFTDSDWASSFDDRR------- 293

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDS 120
                                 +AEYA ATSAACQAIWLRRMLTELQHEQEGATVIFCD+
Sbjct: 294 ----------------------KAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFCDN 353

Query: 121 KATISMTKNPPFHSRKS--TLTFTFIL-FVAKEEVSLSYCSTHEQCTDILTKVLSNEKLC 180
           KATISMTKNP FHSR     + F FI   V KEEVSLSYCST EQ  DILTK LS EK C
Sbjct: 354 KATISMTKNPTFHSRTKHIDIRFHFIRDLVVKEEVSLSYCSTDEQWADILTKALSKEKFC 403

Query: 181 YFRAMMGISKFESRGNIED 197
           YFRAMMGISKFESRG+IED
Sbjct: 414 YFRAMMGISKFESRGSIED 403

BLAST of Cmc10g0281041 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-18
Identity = 61/195 (31.28%), Postives = 100/195 (51.28%), Query Frame = 0

Query: 2   QCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVLT 61
           + P   H  A  +++ YI GT+  G++YS     +L  F+D+ + S  D RRS +   + 
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 62  LGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIWLRRMLTELQHEQEGATVIFCDSK 121
           LG+ +I+W SK Q  V+ SS+EAEY   + A  + +WL +   ELQ      T++FCD+ 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 122 ATISMTKNPPFHSR----KSTLTFTFILFVAKEEVSLSYCSTHEQ--CTDILTKVLSNEK 181
           A I +  N  FH R    +S         V +  +S S+ +  EQ   T+ L+ +L    
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQDGFTEYLSPILRG-T 586

Query: 182 LCYFRAMMGISKFES 191
           + Y  +M G++  E+
Sbjct: 587 IMYIVSMFGLAGLEA 600

BLAST of Cmc10g0281041 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-11
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0

Query: 1   MQCPSRDHFGAAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVSTNVL 60
           M  P+   F   K+V+RY+ GTI +G++  K     +  F DSDWA     RRS +    
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  TLGSEVITWSSKIQATVALSSSEAEYAVATSAACQAIW 99
            LG  +I+WS+K Q TV+ SS+E EY      A +  W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

BLAST of Cmc10g0281041 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.8e-05
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 11 AAKQVMRYIVGTIEYGIWYSKVFYFKLCGFTDSDWASSLDDRRSVS 57
          A  +V+ Y+ GT+  G++YS     +L  F DSDWAS  D RRSV+
Sbjct: 31 AVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVT 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038903.13.1e-8080.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0056486.12.0e-79100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0056051.11.0e-7880.90putative gag-pol polyprotein, identical [Cucumis melo var. makuwa][more]
KAA0058475.15.7e-6672.36Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0061309.11.6e-6570.35Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Q9ZT941.9e-2434.74Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW22.1e-2333.16Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109783.4e-2133.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.5e-1833.70Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV728.9e-1441.24Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A5A7T7G81.5e-8080.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UQA69.7e-80100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7URA04.8e-7980.90Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UXY42.7e-6672.36Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CF888.0e-6670.35Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
AT4G23160.13.6e-1831.28cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.5e-1137.76DNA/RNA polymerases superfamily protein [more]
ATMG00240.17.8e-0545.65Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 50..187
NoneNo IPR availablePANTHERPTHR11439:SF355CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 50..187
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 39..172
e-value: 4.14998E-53
score: 164.564

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0281041.1Cmc10g0281041.1mRNA