Cmc10g0281001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0281001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr10: 19123034 .. 19123273 (-)
RNA-Seq Expression	Cmc10g0281001
Synteny	Cmc10g0281001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGTAAGTAA

mRNA sequence

ATGCAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGTAAGTAA

Coding sequence (CDS)

ATGCAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGTAAGTAA

Protein sequence

MQNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGK

Homology

[Close]

BLAST of Cmc10g0281001 vs. NCBI nr
Match: KAA0063126.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 33  ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 92

Query: 62  ILRDALSRPNRLKVPKGK 80
           ILRDALSRPNRLKVPKGK
Sbjct: 93  ILRDALSRPNRLKVPKGK 110

[Close]

BLAST of Cmc10g0281001 vs. NCBI nr
Match: KAA0054690.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   MQNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADS 60
           +QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 140 VQNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADS 199

Query: 61  RILRDALSRPNRLKVPKG 79
           RILRDALSRPNRLKVPKG
Sbjct: 200 RILRDALSRPNRLKVPKG 217

[Close]

BLAST of Cmc10g0281001 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 62  ILRDALSRPNRLKVPKG 79
           ILRDALSRPNRLKVPKG
Sbjct: 222 ILRDALSRPNRLKVPKG 238

[Close]

BLAST of Cmc10g0281001 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 62  ILRDALSRPNRLKVPKG 79
           ILRDALSRPNRLKVPKG
Sbjct: 222 ILRDALSRPNRLKVPKG 238

[Close]

BLAST of Cmc10g0281001 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 62  ILRDALSRPNRLKVPKG 79
           ILRDALSRPNRLKVPKG
Sbjct: 222 ILRDALSRPNRLKVPKG 238

[Close]

BLAST of Cmc10g0281001 vs. ExPASy TrEMBL
Match: A0A5A7UHD9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005150 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   MQNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADS 60
           +QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADS
Sbjct: 140 VQNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADS 199

Query: 61  RILRDALSRPNRLKVPKG 79
           RILRDALSRPNRLKVPKG
Sbjct: 200 RILRDALSRPNRLKVPKG 217

[Close]

BLAST of Cmc10g0281001 vs. ExPASy TrEMBL
Match: A0A5A7V9K9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1724G00010 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 33  ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 92

Query: 62  ILRDALSRPNRLKVPKGK 80
           ILRDALSRPNRLKVPKGK
Sbjct: 93  ILRDALSRPNRLKVPKGK 110

[Close]

BLAST of Cmc10g0281001 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 62  ILRDALSRPNRLKVPKG 79
           ILRDALSRPNRLKVPKG
Sbjct: 222 ILRDALSRPNRLKVPKG 238

[Close]

BLAST of Cmc10g0281001 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 62  ILRDALSRPNRLKVPKG 79
           ILRDALSRPNRLKVPKG
Sbjct: 222 ILRDALSRPNRLKVPKG 238

[Close]

BLAST of Cmc10g0281001 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           +NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 62  ILRDALSRPNRLKVPKG 79
           ILRDALSRPNRLKVPKG
Sbjct: 222 ILRDALSRPNRLKVPKG 238

[Close]

BLAST of Cmc10g0281001 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 2  QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
          ++C+GA+D T+I   V       +R RKG+++ N+L  C+   +F+YVL+GWEGSA DS+
Sbjct: 23 KDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSK 82

Query: 62 ILRDALSR-PNRLKVPK 78
          +L DAL+R  NRL VP+
Sbjct: 83 VLNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc10g0281001 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-13
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 2   QNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 61
           ++C+G +D  +I V V   ++  +R   G +  NVL        F YVLAGWEGSA+D +
Sbjct: 141 KDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQ 200

Query: 62  ILRDALSRPNRLKVPKGK 80
           +L  AL+R N+L+VP+GK
Sbjct: 201 VLNAALTRRNKLQVPQGK 218

[Close]

BLAST of Cmc10g0281001 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 22/72 (30.56%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 5   LGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILR 64
           +GA+DGT++ V V    +  Y  R    + N++ +CD K  F Y+  G  GS  D+ +L+
Sbjct: 177 VGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQ 236

Query: 65  DALSRPNRLKVP 77
            A    +   +P
Sbjct: 237 IAQQSDSEFPLP 248

[Close]

BLAST of Cmc10g0281001 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.7e-04
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 46 FVYVLAGWEGSAADSRILRDALSR 70
          F+YVL+GWEGSA DSR+L DAL +
Sbjct: 25 FIYVLSGWEGSAHDSRVLSDALRK 48

The following BLAST results are available for this feature:

BLAST of Cmc10g0281001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063126.1	1.4e-36	98.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054690.1	1.4e-36	98.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	5.5e-36	98.70	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	5.5e-36	98.70	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0051057.1	5.5e-36	98.70	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0281001 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc10g0281001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHD9	7.0e-37	98.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V9K9	7.0e-37	98.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW1	2.7e-36	98.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	2.7e-36	98.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9H2	2.7e-36	98.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc10g0281001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	1.1e-15	46.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	5.3e-13	42.31	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.2e-06	30.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	2.7e-04	70.83	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 8..65 e-value: 7.7E-9 score: 35.4
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 2..79
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0281001.1	Cmc10g0281001.1	mRNA