Cmc10g0280641 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0280641
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr10: 18486636 .. 18487247 (+)
RNA-Seq ExpressionCmc10g0280641
SyntenyCmc10g0280641
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATAAAGGAAAGAAAGGTTGCATAATGTTTCTTGTACACATGGTAGAAGTGCAGAGAGAAAAGCTGAAGCCAAAAGATGTTCCTGTAGTGAAGGAGTTTCTTGATGTATTTCAAGATGATCTATCAAGTTTGCCACCTGATAGAGAGGTCGAGTTCACTATTGAATTGTTATCAGGAATAGCACCTATTTCACAAGCACCGTACATAATGGCTTCAAGCGAGCTTAAAGAACTGAAGGTGCAGTTACAAGAACTGGTTAACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGTACCAGTGCAATTTGTGAAAAAGAAATATGGTACCCTTAGATTATGTATTGACTATAGGCAGTTAAACAAGGTTACGATACGTAACAAGTATCCTTTACCACGTATCGTTGACTTATTTGATCAGCTAAGGGGAGCAACATTATTCTTTAAGATTGATTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATTAGATATTCCTAACACAGCATTAAAGACAAGCTATGAGCACTATGAGTTTCTAGTTATGCTATTCAGTCTAACGAATGCACCAGCAGTTTTCATGAATAGAATCTTCCATTAA

mRNA sequence

ATGTTGGATAAAGGAAAGAAAGGTTGCATAATGTTTCTTGTACACATGGTAGAAGTGCAGAGAGAAAAGCTGAAGCCAAAAGATGTTCCTGTAGTGAAGGAGTTTCTTGATGTATTTCAAGATGATCTATCAAGTTTGCCACCTGATAGAGAGGTCGAGTTCACTATTGAATTGTTATCAGGAATAGCACCTATTTCACAAGCACCGTACATAATGGCTTCAAGCGAGCTTAAAGAACTGAAGGTGCAGTTACAAGAACTGGTTAACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGTACCAGTGCAATTTGTGAAAAAGAAATATGGTACCCTTAGATTATGTATTGACTATAGGCAGTTAAACAAGGTTACGATACGTAACAAGTATCCTTTACCACGTATCGTTGACTTATTTGATCAGCTAAGGGGAGCAACATTATTCTTTAAGATTGATTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATTAGATATTCCTAACACAGCATTAAAGACAAGCTATGAGCACTATGAGTTTCTAGTTATGCTATTCAGTCTAACGAATGCACCAGCAGTTTTCATGAATAGAATCTTCCATTAA

Coding sequence (CDS)

ATGTTGGATAAAGGAAAGAAAGGTTGCATAATGTTTCTTGTACACATGGTAGAAGTGCAGAGAGAAAAGCTGAAGCCAAAAGATGTTCCTGTAGTGAAGGAGTTTCTTGATGTATTTCAAGATGATCTATCAAGTTTGCCACCTGATAGAGAGGTCGAGTTCACTATTGAATTGTTATCAGGAATAGCACCTATTTCACAAGCACCGTACATAATGGCTTCAAGCGAGCTTAAAGAACTGAAGGTGCAGTTACAAGAACTGGTTAACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGTACCAGTGCAATTTGTGAAAAAGAAATATGGTACCCTTAGATTATGTATTGACTATAGGCAGTTAAACAAGGTTACGATACGTAACAAGTATCCTTTACCACGTATCGTTGACTTATTTGATCAGCTAAGGGGAGCAACATTATTCTTTAAGATTGATTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATTAGATATTCCTAACACAGCATTAAAGACAAGCTATGAGCACTATGAGTTTCTAGTTATGCTATTCAGTCTAACGAATGCACCAGCAGTTTTCATGAATAGAATCTTCCATTAA

Protein sequence

MLDKGKKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPISQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNKVTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLVMLFSLTNAPAVFMNRIFH
Homology
BLAST of Cmc10g0280641 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 5.1e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 260 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 319

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 320 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 379

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 380 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 439

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFH 460

BLAST of Cmc10g0280641 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 5.1e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 599 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 658

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 659 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 718

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 719 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFH 799

BLAST of Cmc10g0280641 vs. NCBI nr
Match: KAA0062270.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 5.1e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 497 RKGCTTFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 556

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 557 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 616

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 617 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 676

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 677 MPFGLTNAPAVFMDLMNRIFH 697

BLAST of Cmc10g0280641 vs. NCBI nr
Match: KAA0036676.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 5.1e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 200 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 259

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 260 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 319

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 320 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 379

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 380 MPFGLTNAPAVFMDLMNRIFH 400

BLAST of Cmc10g0280641 vs. NCBI nr
Match: TYK27290.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 1.9e-85
Identity = 166/201 (82.59%), Postives = 173/201 (86.07%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 528 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 587

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 588 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 647

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGA LF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 648 VTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 707

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 708 MPFGLTNAPAVFMDLMNRIFH 728

BLAST of Cmc10g0280641 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-26
Identity = 72/204 (35.29%), Postives = 106/204 (51.96%), Query Frame = 0

Query: 3   DKGKKGCIMFLVHMVEVQREKLKPKD------VPVVKEFLDVFQDDLSSLPPDRE---VE 62
           + GK   ++  +  VE        KD      V + +++ ++ ++DL   P D     V+
Sbjct: 526 EDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVK 585

Query: 63  FTIELLSGIAPISQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGT 122
             IE+  G       PY +     +E+   +Q+L++  +I PS SP   PV  V KK GT
Sbjct: 586 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT 645

Query: 123 LRLCIDYRQLNKVTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTA 182
            RLC+DYR LNK TI + +PLPRI +L  ++  A +F  +DL SGYHQ+ +   D   TA
Sbjct: 646 FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTA 705

Query: 183 LKTSYEHYEFLVMLFSLTNAPAVF 198
             T    YE+ VM F L NAP+ F
Sbjct: 706 FVTPSGKYEYTVMPFGLVNAPSTF 729

BLAST of Cmc10g0280641 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-26
Identity = 72/204 (35.29%), Postives = 106/204 (51.96%), Query Frame = 0

Query: 3   DKGKKGCIMFLVHMVEVQREKLKPKD------VPVVKEFLDVFQDDLSSLPPDRE---VE 62
           + GK   ++  +  VE        KD      V + +++ ++ ++DL   P D     V+
Sbjct: 552 EDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVK 611

Query: 63  FTIELLSGIAPISQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGT 122
             IE+  G       PY +     +E+   +Q+L++  +I PS SP   PV  V KK GT
Sbjct: 612 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT 671

Query: 123 LRLCIDYRQLNKVTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTA 182
            RLC+DYR LNK TI + +PLPRI +L  ++  A +F  +DL SGYHQ+ +   D   TA
Sbjct: 672 FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTA 731

Query: 183 LKTSYEHYEFLVMLFSLTNAPAVF 198
             T    YE+ VM F L NAP+ F
Sbjct: 732 FVTPSGKYEYTVMPFGLVNAPSTF 755

BLAST of Cmc10g0280641 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 59/147 (40.14%), Postives = 85/147 (57.82%), Query Frame = 0

Query: 63  APISQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKK-----YGTLRLC 122
           +PI    Y +A +   E++ Q+QE++N+G IR S SP+  P   V KK         R+ 
Sbjct: 205 SPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVV 264

Query: 123 IDYRQLNKVTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTS 182
           IDYR+LN++TI ++YP+P + ++  +L     F  IDL  G+HQ+++ E  I  TA  T 
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 183 YEHYEFLVMLFSLTNAPAVF---MNRI 202
             HYE+L M F L NAPA F   MN I
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNI 351

BLAST of Cmc10g0280641 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-22
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 113 TLRLCIDYRQLNKVTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNT 172
           +LR+CIDYR L KVTI+NKYP+PR+ DLFD+L  AT F K+DLRSGY Q+++ + D P T
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 173 ALKTSYEHYEFLVMLFSLTNAPAVFMN 200
              T Y  +EF VM F LTNA A F N
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCN 91

BLAST of Cmc10g0280641 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.2e-22
Identity = 63/187 (33.69%), Postives = 103/187 (55.08%), Query Frame = 0

Query: 13  LVHMVEVQREKLKPKDVPVVKEFLDV-FQDDLSSLP-PDREVEFTIELLSGIAPISQAPY 72
           L  M +V     +P+   + KEF D+  + +   LP P + +EF +EL      +    Y
Sbjct: 359 LSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNY 418

Query: 73  IMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNKVTIRN 132
            +   +++ +  ++ + +  G IR S +    PV FV KK GTLR+ +DY+ LNK    N
Sbjct: 419 PLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPN 478

Query: 133 KYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLVMLFSL 192
            YPLP I  L  +++G+T+F K+DL+S YH ++VR+ D    A +     +E+LVM + +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538

Query: 193 TNAPAVF 198
           + APA F
Sbjct: 539 STAPAHF 545

BLAST of Cmc10g0280641 vs. ExPASy TrEMBL
Match: A0A5A7T3K4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00170 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 200 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 259

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 260 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 319

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 320 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 379

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 380 MPFGLTNAPAVFMDLMNRIFH 400

BLAST of Cmc10g0280641 vs. ExPASy TrEMBL
Match: A0A5A7U819 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001730 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 260 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 319

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 320 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 379

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 380 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 439

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFH 460

BLAST of Cmc10g0280641 vs. ExPASy TrEMBL
Match: A0A5A7VNK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002190 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 599 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 658

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 659 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 718

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 719 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFH 799

BLAST of Cmc10g0280641 vs. ExPASy TrEMBL
Match: A0A5A7V4W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00400 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 167/201 (83.08%), Postives = 174/201 (86.57%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 497 RKGCTTFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 556

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 557 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 616

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGATLF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 617 VTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 676

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 677 MPFGLTNAPAVFMDLMNRIFH 697

BLAST of Cmc10g0280641 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 9.4e-86
Identity = 166/201 (82.59%), Postives = 173/201 (86.07%), Query Frame = 0

Query: 6   KKGCIMFLVHMVEVQREKLKPKDVPVVKEFLDVFQDDLSSLPPDREVEFTIELLSGIAPI 65
           +KGC  FL H+V VQREKLKP+DVPVVKEFLDVF DDLS LPPDRE+EFTIELL G API
Sbjct: 561 RKGCTAFLAHIVVVQREKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPI 620

Query: 66  SQAPYIMASSELKELKVQLQELVNKGYIRPSVSPWGVPVQFVKKKYGTLRLCIDYRQLNK 125
           SQAPY MA SELKELK+QLQELV+KGYIRPSVSPWG PV FVKKK GTLRLCIDYRQLNK
Sbjct: 621 SQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNK 680

Query: 126 VTIRNKYPLPRIVDLFDQLRGATLFFKIDLRSGYHQLKVRELDIPNTALKTSYEHYEFLV 185
           VTIRNKYPLPRI DLFDQLRGA LF KIDLRSGYHQLKVRE DI  TA +T Y HYEF V
Sbjct: 681 VTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 740

Query: 186 MLFSLTNAPAVF---MNRIFH 204
           M F LTNAPAVF   MNRIFH
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFH 761

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050527.15.1e-8683.08DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0066849.15.1e-8683.08DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0062270.15.1e-8683.08DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0036676.15.1e-8683.08DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK27290.11.9e-8582.59DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q993156.2e-2635.29Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG56.2e-2635.29Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P208254.1e-2240.14Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P318435.4e-2258.62RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1[more]
P0CT419.2e-2233.69Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
Match NameE-valueIdentityDescription
A0A5A7T3K42.5e-8683.08Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold51... [more]
A0A5A7U8192.5e-8683.08Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17... [more]
A0A5A7VNK42.5e-8683.08Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7V4W92.5e-8683.08Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7U2V79.4e-8682.59Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 53..192
e-value: 3.4E-52
score: 178.8
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 139..198
NoneNo IPR availablePANTHERPTHR24559:SF382SUBFAMILY NOT NAMEDcoord: 21..143
NoneNo IPR availablePANTHERPTHR24559:SF382SUBFAMILY NOT NAMEDcoord: 139..198
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 21..143
NoneNo IPR availableCDDcd01647RT_LTRcoord: 91..203
e-value: 5.1462E-48
score: 153.135
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 132..199
e-value: 3.4E-52
score: 178.8
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 31..200

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0280641.1Cmc10g0280641.1mRNA