Cmc10g0280381 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0280381
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr10: 18089881 .. 18094822 (+)
RNA-Seq ExpressionCmc10g0280381
SyntenyCmc10g0280381
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTAAGTTATTCTTGGCAATTTCCCAAAGAAAAGCTACACAAAAACCTCATCTTCCTCGTCTAAACCTGTCTGAACCGTAGTCTTCGATAACCGCCTCCTCCTTCCTCTCATTTCCCCAGCCATACGGATTTTTCTTCGCAATCTATACGAGACTTTTGGCCATTCCGAACTTCCCCAATCACTTTCCAACACCTCGCTTCTGACGATTCCCGTTGCCACCTTGATACCAATGAAATCCTTAATGGAGATCACTATTTCCTTCGATTTATACACGATCAATCCTCCCTATTCTACCCTCCTCCTTCGCTCCACCTATATTCTTTGTATGTTTATATTGTTATGAATCTTTGTAGCGGAGGTGAGTTGTTCGATAGGATCATCTAGAAGGGATATTACTGCGAGAGAAAAGTTGCGGAACTGACCAGGATTATTATTGGTGTTGTTGAGACTTGTCATTCGCTTGGAGTTATGCAAAGAGATTTGAAGCCAGAAAATTTCTTGTTGGTTAACAAGGGTGATGGCTTCTCTCTTAAAGTTATTGATTTTGGCCTCTTTGTTTCCTTCAAACCAGGTGAAAAGAAAGTGCATTAGTTACTCTGTTTCCTTATGGGTTTTATTTTATTGATGAATCAAATATATATCCCATTAGTATGTGGTTTGGCAATATTGGCTCCTTAATTTTGTTTATAGCATGTGTAGTAACTATTCTCATCGTCACAGTAAAATTTATGAGTAAATAATCATCGGTGGCATATGAGCTAAGTCATATGATAATCCCTACAACGAGTTGGAAAACATTTGTATTGAAATATTCAGCTTCTTTATGGAAAAGGATTGAGATTCTGGAAATAAAACTATGCATAATGCAAAACAATTGAAGTAGGAATATTGCAATAGGTTAGAAGGAGGTAATTCCCGATCCTTTACTAAAAGATGTTTAATATTTCAACTTATTGAACCACCACATTTCAACGCTAAAAGATTAGCTTGCTTGACTTAAGCTTCTTTTTCTTCCATTCGTATTTTCTTTAATCATCATATTGAATAGTTTTTCATTTCCAGCTTGTGTTCGAACCTTGCGAAGGAGAAAATATCATCATTACGGGTTTTTAAATTAAAAAGTCTGAGGTAACATTAAAAAAACTTCATGTAGAATAATTTTACCTCGATTTGAAGTAGAATAATTTCTTTTACTCCATTGTCAGATTCCATCGTTTATACATATCAGAGAGATTGAGTTTCGATTTCCTGCTGTAAGTATCTGGTTCCTTTTTGTATCTGTAGCTTATACGATCACTGTTATATTTACACGCACCCTTTGATGGCATGAGAGAGATCTGATTCAAAGGTACGCTTTTCTTTAACCCCCTCGTCCCAGATATAACGTTTCAGGGTATTATGAGACTTTCATGTAAATAAAATGTTTTGAAACTAGTGGATTTTAAAGACAACTACGTGCAGTGAGGGCAAAGTTGTTTAAAAGAGAAGATGGAACAATGGGGCCATGATTGAGCTCTCTTTTTGTTGGCTTGATTTTTTGGATGCATTTGTATTTTTCATTTTTTTCTTAATGAAAAATGTTGCTGTTAGGTAGCCAGTTGAGATCTCACTTTTTTTCTTTTTTAGTTTTCAAAGCTATAACTTGGTTTTTGATAACATCGGTAAAAGGTGTATAATTAAGCAAGAAATTTAGATATGGAAACGGTGTTCATATATTAATTTTGAAAAACTAAAAACTAAAAACCAAATAATAACCAAACGTGACCTTAACTTGTTAAAACTTGGTTCCCAAGCATTGACATGTTGTATTTTTGTAGATTCGTTATACTTTTGTTAAGAGTCAACTGAGACTTGAAATGTCTCCCCCTTATTCTGTTATAATTCAGGTACAGTGAGGAGGTTAGCTGATGGTTCTAAGCAAATATGGATCCAATATTCTCTCAACTGAAATGTTTCCATGATTTCCAAAATGCATTATCAATGCTTATTTCCCTGACATTATTATCCTTTTACGGATTACTCATGCATCCTTTTACTGTTCACCGTCCAATTTTAAGACAAGGAAATTAGAAATGATGATATACAATATTTTCTTTCTAGTATCAGGGATGTTGATTTTGAAATAATTGTTGTTGATGATGGAAGTCTTGATGGTACTCAACAAGTTGTGAAACATTTGCAAGGGGTATATGGTGAAGATTTGCAGAGATTGATAAACATTTGTAGGCAGTCAAGGAAGGCATTGAAAGCCAACAGGTACTATATCACCCTTTCAACTCATTTAAATTATTGTTTCAATTGTATGTGTTATTGTTTTATTGTTGTATAACATTTTTTTTCCTTTGGAGAATAGGAATTTACTGAAATCTGATTTTCATGTGACTGCTATAAGGCCTCCCACAGCTCCAGCCAACTTTTGCAAGTTTGCTTTCTTTTAAATCTCATAAATTATTAGTTCTTGAGATTTTCCTTGATTTTTTTACTCGATAGTTTTCATCTGCCATTCACTTTGCATTACTTTATTAAATTTTTTCATGTAATTCTTAAACTTCAGTATATGTGCATATGTGATTGTTCATTTCTTAGAGGGGATCTATTTTCAGGCCAAACACCATTATGTGAAGTTAAGTGATCGTGTAGATAGCTAGACGATGGGGTAGGATCTATTTTCAGGCCACATTTTATTTTCAAAGCTACCTTGTTAGAGTTCTAAGGGAAAAAATGGTTTATTTTAATATTGTTTGAAGAATGATTGAAGTCATCAGGTTGAAAGCTAAGCGATTGTGTAGATAGCCAGATAACCGTTGTAGGTTAAAGACTGAGAATGCGTTTAGTATTTCTTATTTAAGTCTTAGAATTAGGATCTTTTTTCATGTACTGTTGTAGAATGTATATTACACAATATTAAGATTTCATTTTGTGTATACAAATGTAAAAGACAAATATCATAGTTTCTAAAATAATATTAATTTTATTGATTTGTTGGAGTGAAAAAAATATTTATCTACATGGACCCAATGATGGTTTATAAAAAATGGAAAATAATGCAACATTTAAATAAAGATAAATTTGTAAAAATGGACTAAAACAAGGCCTTAATGTAGGTTTTACACTGACATTATTAGGATTTATAATATCGGTTATAAACTGACATTGTTGACCTCTTTAATGTCGGTTTTAAAATGACATTAAAGCCTAACCGACATTAAAAGGCTTCAATAATACTATCAAAGATGTCGATTGAAAACCGACATCAAAGAGGCATTTAATGTTGTTTTTAAACCTACATTAAAGATGCCTTTAAAGCCCAACCGACATTAAAGACCTCTAATAACGCTCACAAAGATGTCGGTTGCCAAGTGACATTAAAGCCCTTTAATGTCGGTTTCATTAAAGGCCAAATTTCTTCTAGTGTCTAAATCTTTGAAATATCGTTGCAAAATACAAATAATGAAAGGTACATTATTAGTAATTGGTAAATTGGATTGGCTTCTTCATGATTATAGTTTTTTCTAAGAGAATATGTTTGTTTTTCAGCATGAATAGCTCAATAGTTCAACTTTTAGCTTCCGAAAAACTTAATGACGATAATTATGCGGTATGGAAATCAAATCTTAACACGATACTAGTGATTGACAATTTAAGATTTGTCTTAACTGAGAAATGTCCTCAAATCCCTACCTTTAAAGTCAATCGAACTAGTCGAGAAGCATATGATCAATGGGTAAAGACTAATGAAAAAGTCTGTGTCTATATTCTTGTCAACATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCCACGACTAAAGAGATTATGGATTCATTAAGGGAAATGTTTGGGCAACCAGAATGTTGCTACCACAAAAGGAAGTTTTCAAGCGGATTGTCCTTTAAAACTAAAGTTCGACCCTCAAAACCTAATGCTCAAATAAAAAAGAAGGGAAAGTAGAAGACTCCTAAGCAGAACAAGGGAAAGAAAGCTGCAGAAAAAGGTAAATGTTACCATTGTGGCCAAAACGGGCACTGGTTAAGGAACTGCCCAAAGTACTTTGTAGAGAAAAAGGCAAAGAAGGAAACGCAAGGTAAATATGACTTACTTGTTGTTGAAACATGTTTAGTGGAATATGAAAATTCAACCTAAATATTAGATTTAGGAGCCACTAACCATATTTGCTTCTCATTTCAGGAAAATATTTCTTGGAAAAGGCTTTCGGAAGGCGAGATCACTCTCAAGGTTGGAACATAAGAGATGGTCTCAACTGAAGCAGTGGGAGATTTAAAGTTGTATTTTAGAGATAGATATATCATACTTAAGAATGTCTTGTACATACAACAAATGAAAAGAAATTTAATATCTATCTCTTGTATTTTGGAACAAATGTATATAATATCTTTTGAAATTAATGAAATGTTCATTTTCTATAAAGGTATTCAAGTTTGTTCTGCTATACTTGACAACAACTTATATAAGTTAAAACCAACATGAGCAAATTTTGTCTTAAATACTGAAATATTTACCTAATTCATCACAAGTCTGATTCTCTTGTAAAATCCAAATAATATAAGGCTAAAGATGAGAATGAATTGTGTAAAACAATAAAGATACTTTGATCAGATCGAGGTAGAGAATATATGGACTTATGTTTCCAAGACTATTTGATAGAACATGGAATCCAGTCATAACTTTCTGCACCTAGTACGCTTCAACATAATGGTGTATTAGAAAGAAGAAACTGAACCTTGTTAAACATGGTTCACTCTATGATGAGCTTTCTCAGTTGCCAAATTCCTTTGAGGATATGCGTTAGAGACAGTTATCTATATTTTGGACAAAATTACCTAAAAGTGTTTTAGAAACACCTTATGAGCTATGGAAAGGGCGCAAAGGAAGTTTATGTCACTTTAGAATTTGGGGATGCCCAACACACGTGT

mRNA sequence

TTTTTTAAGTTATTCTTGGCAATTTCCCAAAGAAAAGCTACACAAAAACCTCATCTTCCTCGTCTAAACCTGTCTGAACCGTAGTCTTCGATAACCGCCTCCTCCTTCCTCTCATTTCCCCAGCCATACGGATTTTTCTTCGCAATCTATACGAGACTTTTGGCCATTCCGAACTTCCCCAATCACTTTCCAACACCTCGCTTCTGACGATTCCCGTTGCCACCTTGATACCAATGAAATCCTTAATGGAGATCACTATTTCCTTCGATTTATACACGATCAATCCTCCCTATTCTACCCTCCTCCTTCGCTCCACCTATATTCTTTGTATGTTTATATTGTTATGAATCTTTGTAGCGGAGGTGAGTTGTTCGATAGGATCATCTAGAAGGGATATTACTGCGAGAGAAAAGTTGCGGAACTGACCAGGATTATTATTGGTGTTGTTGAGACTTGTCATTCGCTTGGAGTTATGCAAAGAGATTTGAAGCCAGAAAATTTCTTGTTGGTTAACAAGGGTGATGGCTTCTCTCTTAAAGTTATTGATTTTGGCCTCTTTGTTTCCTTCAAACCAGCTTGTGTTCGAACCTTGCGAAGGAGAAAATATCATCATTACGGGTTTTTAAATTAAAAAGTCTGAGATTCCATCGTTTATACATATCAGAGAGATTGAGTTTCGATTTCCTGCTGTAAGTATCTGGTTCCTTTTTGTATCTGTAGCTTATACGATCACTGTTATATTTACACGCACCCTTTGATGGCATGAGAGAGATCTGATTCAAAGTATCAGGGATGTTGATTTTGAAATAATTGTTGTTGATGATGGAAGTCTTGATGGTACTCAACAAGTTGTGAAACATTTGCAAGGGGTATATGGTGAAGATTTGCAGAGATTGATAAACATTTGTAGGCAGTCAAGGAAGGCATTGAAAGCCAACAGGAATTTACTGAAATCTGATTTTCATGTGACTGCTATAAGGCCTCCCACAGCTCCAGCCAACTTTTGCAAGTTTGCTTTCTTTTAAATCTCATAAATTATTAGTTCTTGAGATTTTCCTTGATTTTTTTACTCGATAGTTTTCATCTGCCATTCACTTTGCATTACTTTATTAAATTTTTTCATGTAATTCTTAAACTTCAGTATATGTGCATATGTGATTGTTCATTTCTTAGAGGGGATCTATTTTCAGGCCAAACACCATTATGTGAAGTTAAGTGATCGTGTAGATAGCTAGACGATGGGGTAGGATCTATTTTCAGGCCACATTTTATTTTCAAAGCTACCTTGTTAGAGTTCTAAGGGAAAAAATGGTTTATTTTAATATTGTTTGAAGAATGATTGAAGTCATCAGGTTGAAAGCTAAGCGATTGTGTAGATAGCCAGATAACCGTTGTAGGTTAAAGACTGAGAATGCGTTTAGTATTTCTTATTTAAGTCTTAGAATTAGGATCTTTTTTCATGTACTGTTGTAGAATGTATATTACACAATATTAAGATTTCATTTTGTGTATACAAATGTAAAAGACAAATATCATAGTTTCTAAAATAATATTAATTTTATTGATTTGTTGGAGTGAAAAAAATATTTATCTACATGGACCCAATGATGGTTTATAAAAAATGGAAAATAATGCAACATTTAAATAAAGATAAATTTGTAAAAATGGACTAAAACAAGGCCTTAATGTAGGTTTTACACTGACATTATTAGGATTTATAATATCGGTTATAAACTGACATTGTTGACCTCTTTAATGTCGGTTTTAAAATGACATTAAAGCCTAACCGACATTAAAAGGCTTCAATAATACTATCAAAGATGTCGATTGAAAACCGACATCAAAGAGGCATTTAATGTTGTTTTTAAACCTACATTAAAGATGCCTTTAAAGCCCAACCGACATTAAAGACCTCTAATAACGCTCACAAAGATGTCGGTTGCCAAGTGACATTAAAGCCCTTTAATGTCGGTTTCATTAAAGGCCAAATTTCTTCTAGTGTCTAAATCTTTGAAATATCGTTGCAAAATACAAATAATGAAAGGTACATTATTAGTAATTGGTAAATTGGATTGGCTTCTTCATGATTATAGTTTTTTCTAAGAGAATATGTTTGTTTTTCAGCATGAATAGCTCAATAGTTCAACTTTTAGCTTCCGAAAAACTTAATGACGATAATTATGCGGTATGGAAATCAAATCTTAACACGATACTAGTGATTGACAATTTAAGATTTGTCTTAACTGAGAAATGTCCTCAAATCCCTACCTTTAAAGTCAATCGAACTAGTCGAGAAGCATATGATCAATGGGTAAAGACTAATGAAAAAGTCTGTGTCTATATTCTTGTCAACATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCCACGACTAAAGAGATTATGGATTCATTAAGGGAAATGTTTGGGCAACCAGAATGTTGCTACCACAAAAGGAAGTTTTCAAGCGGATTGTCCTTTAAAACTAAAGTTCGACCCTCAAAACCTAATGCTCAAATAAAAAAGAAGGGAAAGTAGAAGACTCCTAAGCAGAACAAGGGAAAGAAAGCTGCAGAAAAAGGTAAATGTTACCATTGTGGCCAAAACGGGCACTGGTTAAGGAACTGCCCAAAGTACTTTGTAGAGAAAAAGGCAAAGAAGGAAACGCAAGGAAAATATTTCTTGGAAAAGGCTTTCGGAAGGCGAGATCACTCTCAAGGTTGGAACATAAGAGATGGTCTCAACTGAAGCAGTGGGAGATTTAAAGTTGTATTTTAGAGATAGATATATCATACTTAAGAATGTCTTGTACATACAACAAATGAAAAGAAATTTAATATCTATCTCTTGTATTTTGGAACAAATGTATATAATATCTTTTGAAATTAATGAAATGTTCATTTTCTATAAAGGTATTCAAGTTTGTTCTGCTATACTTGACAACAACTTATATAAGTTAAAACCAACATGAGCAAATTTTGTCTTAAATACTGAAATATTTACCTAATTCATCACAAGTCTGATTCTCTTGTAAAATCCAAATAATATAAGGCTAAAGATGAGAATGAATTGTGTAAAACAATAAAGATACTTTGATCAGATCGAGGTAGAGAATATATGGACTTATGTTTCCAAGACTATTTGATAGAACATGGAATCCAGTCATAACTTTCTGCACCTAGTACGCTTCAACATAATGGTGTATTAGAAAGAAGAAACTGAACCTTGTTAAACATGGTTCACTCTATGATGAGCTTTCTCAGTTGCCAAATTCCTTTGAGGATATGCGTTAGAGACAGTTATCTATATTTTGGACAAAATTACCTAAAAGTGTTTTAGAAACACCTTATGAGCTATGGAAAGGGCGCAAAGGAAGTTTATGTCACTTTAGAATTTGGGGATGCCCAACACACGTGT

Coding sequence (CDS)

ATGATTATAGTTTTTTCTAAGAGAATATGTTTGTTTTTCAGCATGAATAGCTCAATAGTTCAACTTTTAGCTTCCGAAAAACTTAATGACGATAATTATGCGGTATGGAAATCAAATCTTAACACGATACTAGTGATTGACAATTTAAGATTTGTCTTAACTGAGAAATGTCCTCAAATCCCTACCTTTAAAGTCAATCGAACTAGTCGAGAAGCATATGATCAATGGGTAAAGACTAATGAAAAAGTCTGTGTCTATATTCTTGTCAACATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCCACGACTAAAGAGATTATGGATTCATTAAGGGAAATGTTTGGGCAACCAGAATGTTGCTACCACAAAAGGAAGTTTTCAAGCGGATTGTCCTTTAAAACTAAAGTTCGACCCTCAAAACCTAATGCTCAAATAAAAAAGAAGGGAAAGTAG

Protein sequence

MIIVFSKRICLFFSMNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYDQWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPECCYHKRKFSSGLSFKTKVRPSKPNAQIKKKGK
Homology
[Close]
BLAST of Cmc10g0280381 vs. NCBI nr
Match: KAA0025339.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK06462.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKL+DDNYA WKSNLNTILV+D+LRFVLTE+CPQ PT   NR SR++YD
Sbjct: 1   MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           QW+K NEK  VYIL +MSDVLAKK+ESLATTKEIMDSL+ MFGQPE
Sbjct: 61  QWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKGMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. NCBI nr
Match: KAA0047753.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK02387.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.2e-40
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSI+QLLASEKLN DNY  WKSNLNTILV+D+LRFVLTEKCPQ PT  VNR SR+AYD
Sbjct: 1   MNSSILQLLASEKLNGDNYVTWKSNLNTILVVDDLRFVLTEKCPQTPTSNVNRASRKAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           +W+K NEK CVYIL +MS VLAKK+ESLATTKE+MDSL+ MFGQPE
Sbjct: 61  RWIKANEKACVYILASMSYVLAKKHESLATTKEVMDSLKGMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. NCBI nr
Match: KAA0059050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 7.1e-40
Identity = 87/106 (82.08%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKLNDDNYA WKSNLNTILV+++LRFVLTE+CPQ PT   NRTS EAYD
Sbjct: 1   MNSSIVQLLASEKLNDDNYAAWKSNLNTILVVNDLRFVLTEECPQTPTSNANRTSWEAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           +WVK NEK  VYILV+MSDVL KK+ESLAT KEIMDSLR MFGQPE
Sbjct: 61  RWVKANEKARVYILVSMSDVLEKKHESLATPKEIMDSLRVMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. NCBI nr
Match: KAA0050552.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK18792.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 98/201 (48.76%), Postives = 114/201 (56.72%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKLN DNYA WKSNLNTILV+D+LRF+LTE+CPQ      NR SR+AYD
Sbjct: 1   MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFILTEECPQTTASNANRASRKAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE-------------- 134
           +W+K NEK  VYIL +M+DVLAKK+ESLATTK+IMDSL+ MFGQPE              
Sbjct: 61  RWIKANEKASVYILASMTDVLAKKHESLATTKKIMDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 135 --------------------------------------------------CCYHKRKFSS 152
                                                             CCY+K KF  
Sbjct: 121 RMKEGTSVREYVLDMMMHFNIAEVNGSAIDEANQVSFILDISKILPSKSKCCYNKEKFKR 180

[Close]
BLAST of Cmc10g0280381 vs. NCBI nr
Match: TYK06494.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKLNDDNYA WKSNLNTILV+D+LRFVLTE+CPQ P    NRTSR+AYD
Sbjct: 1   MNSSIVQLLASEKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSRKAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           +W+K NEKV VYIL +MSDVLAKK+ESL   K+IMDSL+EMFGQPE
Sbjct: 61  RWIKENEKVRVYILASMSDVLAKKHESLTIAKKIMDSLKEMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match: A0A5A7SJ55 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00200 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.0e-41
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKL+DDNYA WKSNLNTILV+D+LRFVLTE+CPQ PT   NR SR++YD
Sbjct: 1   MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           QW+K NEK  VYIL +MSDVLAKK+ESLATTKEIMDSL+ MFGQPE
Sbjct: 61  QWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKGMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match: A0A5D3BSI8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00910 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.5e-40
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSI+QLLASEKLN DNY  WKSNLNTILV+D+LRFVLTEKCPQ PT  VNR SR+AYD
Sbjct: 1   MNSSILQLLASEKLNGDNYVTWKSNLNTILVVDDLRFVLTEKCPQTPTSNVNRASRKAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           +W+K NEK CVYIL +MS VLAKK+ESLATTKE+MDSL+ MFGQPE
Sbjct: 61  RWIKANEKACVYILASMSYVLAKKHESLATTKEVMDSLKGMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match: A0A5A7UVD5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00760 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.4e-40
Identity = 87/106 (82.08%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKLNDDNYA WKSNLNTILV+++LRFVLTE+CPQ PT   NRTS EAYD
Sbjct: 1   MNSSIVQLLASEKLNDDNYAAWKSNLNTILVVNDLRFVLTEECPQTPTSNANRTSWEAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           +WVK NEK  VYILV+MSDVL KK+ESLAT KEIMDSLR MFGQPE
Sbjct: 61  RWVKANEKARVYILVSMSDVLEKKHESLATPKEIMDSLRVMFGQPE 106

[Close]
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match: A0A5D3D5J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00050 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.8e-40
Identity = 98/201 (48.76%), Postives = 114/201 (56.72%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKLN DNYA WKSNLNTILV+D+LRF+LTE+CPQ      NR SR+AYD
Sbjct: 1   MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFILTEECPQTTASNANRASRKAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE-------------- 134
           +W+K NEK  VYIL +M+DVLAKK+ESLATTK+IMDSL+ MFGQPE              
Sbjct: 61  RWIKANEKASVYILASMTDVLAKKHESLATTKKIMDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 135 --------------------------------------------------CCYHKRKFSS 152
                                                             CCY+K KF  
Sbjct: 121 RMKEGTSVREYVLDMMMHFNIAEVNGSAIDEANQVSFILDISKILPSKSKCCYNKEKFKR 180

[Close]
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match: A0A5D3C591 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00220 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.8e-40
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 15  MNSSIVQLLASEKLNDDNYAVWKSNLNTILVIDNLRFVLTEKCPQIPTFKVNRTSREAYD 74
           MNSSIVQLLASEKLNDDNYA WKSNLNTILV+D+LRFVLTE+CPQ P    NRTSR+AYD
Sbjct: 1   MNSSIVQLLASEKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSRKAYD 60

Query: 75  QWVKTNEKVCVYILVNMSDVLAKKYESLATTKEIMDSLREMFGQPE 121
           +W+K NEKV VYIL +MSDVLAKK+ESL   K+IMDSL+EMFGQPE
Sbjct: 61  RWIKENEKVRVYILASMSDVLAKKHESLTIAKKIMDSLKEMFGQPE 106

The following BLAST results are available for this feature:
BLAST of Cmc10g0280381 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025339.11.9e-4080.19gag/pol protein [Cucumis melo var. makuwa] >TYK06462.1 gag/pol protein [Cucumis ... [more]
KAA0047753.13.2e-4079.25gag/pol protein [Cucumis melo var. makuwa] >TYK02387.1 gag/pol protein [Cucumis ... [more]
KAA0059050.17.1e-4082.08gag/pol protein [Cucumis melo var. makuwa][more]
KAA0050552.11.2e-3948.76gag/pol protein [Cucumis melo var. makuwa] >TYK18792.1 gag/pol protein [Cucumis ... [more]
TYK06494.11.2e-3979.25gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc10g0280381 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SJ559.0e-4180.19Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G0020... [more]
A0A5D3BSI81.5e-4079.25Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0091... [more]
A0A5A7UVD53.4e-4082.08Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G0076... [more]
A0A5D3D5J65.8e-4048.76Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G0005... [more]
A0A5D3C5915.8e-4079.25Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00220... [more]
BLAST of Cmc10g0280381 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 17..121
NoneNo IPR availablePANTHERPTHR35317:SF16ZINC FINGER, CCHC-TYPE-RELATEDcoord: 17..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0280381.1Cmc10g0280381.1mRNA