Cmc10g0280231 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0280231
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
LocationCMiso1.1chr10: 17776750 .. 17777061 (-)
RNA-Seq ExpressionCmc10g0280231
SyntenyCmc10g0280231
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTAATTTTCCATTCCTCTGTTCCTCTTGAATTTTTTCCTTACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGCCCTCTTCCTCACTTAAAATGTTATCACCATTTGAAATGCTTTTTGGTTATACTCCTGATTTGCATCATTTAGAAGTTTTTGGATGTGCATGTTACCCCCTTCTCAAGCCTTACACCAAACACAAACTTGAACCAAAAACCACCCAACATGTATTTTTAGGCTATCCTCATAACTTCAAAGCCTATATTTGTTACAACCCATTAACCAAACAAACTATAGTTTCATGA

mRNA sequence

ATGTCTCTAATTTTCCATTCCTCTGTTCCTCTTGAATTTTTTCCTTACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGCCCTCTTCCTCACTTAAAATGTTATCACCATTTGAAATGCTTTTTGGTTATACTCCTGATTTGCATCATTTAGAAGTTTTTGGATGTGCATGTTACCCCCTTCTCAAGCCTTACACCAAACACAAACTTGAACCAAAAACCACCCAACATGTATTTTTAGGCTATCCTCATAACTTCAAAGCCTATATTTGTTACAACCCATTAACCAAACAAACTATAGTTTCATGA

Coding sequence (CDS)

ATGTCTCTAATTTTCCATTCCTCTGTTCCTCTTGAATTTTTTCCTTACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGCCCTCTTCCTCACTTAAAATGTTATCACCATTTGAAATGCTTTTTGGTTATACTCCTGATTTGCATCATTTAGAAGTTTTTGGATGTGCATGTTACCCCCTTCTCAAGCCTTACACCAAACACAAACTTGAACCAAAAACCACCCAACATGTATTTTTAGGCTATCCTCATAACTTCAAAGCCTATATTTGTTACAACCCATTAACCAAACAAACTATAGTTTCATGA

Protein sequence

MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS
Homology
BLAST of Cmc10g0280231 vs. NCBI nr
Match: CAA7051267.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           +SL+ H+ +P  F+ YAFSTAV+LINRMP+ +L + SPF M+FG+ P+   L++FGC C+
Sbjct: 615 LSLLHHAQIPNTFWSYAFSTAVYLINRMPTPTLSLQSPFSMIFGFDPNYSKLKIFGCLCF 674

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           P L+PY  HKLEP++T  VFLGY     AY+C++PLT +  VS
Sbjct: 675 PWLRPYRSHKLEPRSTSCVFLGYSLTQSAYLCFDPLTNRLFVS 717

BLAST of Cmc10g0280231 vs. NCBI nr
Match: TKR89925.1 (hypothetical protein D5086_0000238180 [Populus alba])

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-24
Identity = 52/103 (50.49%), Postives = 75/103 (72.82%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++L+ H+S+PL F+P+AF+TAV+LINRMP+ +L + SP+E +FG  P+   L+VF C CY
Sbjct: 251 LTLLAHASIPLRFWPHAFATAVYLINRMPTPTLHLFSPYEKIFGSFPNYSKLKVFDCLCY 310

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           P L+PYT HKLEP++   +F GY     AY+CY+P T +  VS
Sbjct: 311 PWLRPYTSHKLEPRSKPCIFFGYSLTQSAYLCYDPSTTKVFVS 353

BLAST of Cmc10g0280231 vs. NCBI nr
Match: OMO55025.1 (Integrase, catalytic core [Corchorus capsularis])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 52/103 (50.49%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++L+ ++S+PL+++PYA +TAV+L+NR+P+  LK  SPF +LF   P+L  L+VFG  CY
Sbjct: 771 LTLLHNASMPLKYWPYALTTAVYLLNRLPTPVLKNKSPFHLLFSQEPNLEKLKVFGSLCY 830

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           P LKPYT+HK+EPK+   VFLGY  N  AY+C +P++++  VS
Sbjct: 831 PWLKPYTQHKMEPKSRPCVFLGYSKNQSAYLCLDPVSQKIFVS 873

BLAST of Cmc10g0280231 vs. NCBI nr
Match: TQD93593.1 (hypothetical protein C1H46_020801 [Malus baccata])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++L+  + +P +F+ +A +TAV+LINRMP+  L M SPFE+L+  +P L HL++FGCACY
Sbjct: 783 ITLLQQACLPPQFWYHACATAVYLINRMPTLVLSMKSPFEVLYHSSPKLDHLKIFGCACY 842

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           P LKPY  HKL PKT++ +FLGY   +K +IC+NP   + IVS
Sbjct: 843 PSLKPYRSHKLAPKTSECIFLGYAAQYKGFICFNPKDNKLIVS 885

BLAST of Cmc10g0280231 vs. NCBI nr
Match: PKI52922.1 (hypothetical protein CRG98_026753 [Punica granatum])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++L+FHSS   +F+ YAF TAV+LINR+P+ SL   SP E+L G+ P+  +L VFGC  Y
Sbjct: 3   LTLLFHSSTTTKFWDYAFETAVYLINRLPTKSLNFKSPHEILHGHKPNYVNLRVFGCLYY 62

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           P L+PYT+HKLEP++   VF GYP++++ Y C NP T +  +S
Sbjct: 63  PYLRPYTRHKLEPRSQPCVFHGYPYHYQGYRCLNPATGRVFIS 105

BLAST of Cmc10g0280231 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-24
Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++L+ H+S+P  ++PYAF+ AV+LINR+P+  L++ SPF+ LFG +P+   L VFGCACY
Sbjct: 637 LTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACY 696

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           P L+PY +HKL+ K+ Q VFLGY     AY+C +  T +  +S
Sbjct: 697 PWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYIS 739

BLAST of Cmc10g0280231 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++L+ H+SVP  ++PYAFS AV+LINR+P+  L++ SPF+ LFG  P+   L+VFGCACY
Sbjct: 616 LTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACY 675

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYIC 93
           P L+PY +HKLE K+ Q  F+GY     AY+C
Sbjct: 676 PWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLC 707

BLAST of Cmc10g0280231 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 0

Query: 2   SLIFHSSVPLEFFPYAFSTAVFLINRMPSSSL--KMLSPFEMLFGYTPDLHHLEVFGCAC 61
           +++  + +   F+  A  TA +LINR+PS +L     +P+EM     P L HL VFG   
Sbjct: 598 TMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATV 657

Query: 62  YPLLKPYTKHKLEPKTTQHVFLGY-PHNFKAYICYN 95
           Y  +K   + K + K+ + +F+GY P+ FK +   N
Sbjct: 658 YVHIK-NKQGKFDDKSFKSIFVGYEPNGFKLWDAVN 692

BLAST of Cmc10g0280231 vs. ExPASy TrEMBL
Match: A0A2N9H1I5 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33383 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.0e-27
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++LI  +S+PL F+PYAFSTAVFLINR+PS     +SP++ LFG +PD   +  FGCACY
Sbjct: 686 LTLISQASLPLNFWPYAFSTAVFLINRLPSVHRAFISPWQALFGSSPDYASVRSFGCACY 745

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           PLL+PY+ HKL P++TQ VFLGYP N K ++CY P +K+  VS
Sbjct: 746 PLLRPYSSHKLLPRSTQCVFLGYPSNAKGFLCYAPSSKRFYVS 788

BLAST of Cmc10g0280231 vs. ExPASy TrEMBL
Match: A0A2N9I1C1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45685 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.0e-27
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++LI  +S+PL F+PYAFSTAVFLINR+PS     +SP++ LFG +PD   +  FGCACY
Sbjct: 688 LTLISQASLPLNFWPYAFSTAVFLINRLPSVHRAFISPWQALFGSSPDYASVRSFGCACY 747

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           PLL+PY+ HKL P++TQ VFLGYP N K ++CY P +K+  VS
Sbjct: 748 PLLRPYSSHKLLPRSTQCVFLGYPSNAKGFLCYAPSSKRFYVS 790

BLAST of Cmc10g0280231 vs. ExPASy TrEMBL
Match: A0A2N9HPM6 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41461 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.0e-27
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++LI  +S+PL F+PYAFSTAVFLINR+PS     +SP++ LFG +PD   +  FGCACY
Sbjct: 644 LTLISQASLPLNFWPYAFSTAVFLINRLPSVHRAFISPWQALFGSSPDYASVRSFGCACY 703

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS 104
           PLL+PY+ HKL P++TQ VFLGYP N K ++CY P +K+  VS
Sbjct: 704 PLLRPYSSHKLLPRSTQCVFLGYPSNAKGFLCYAPSSKRFYVS 746

BLAST of Cmc10g0280231 vs. ExPASy TrEMBL
Match: A0A2N9G1Z9 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24689 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++LI  SS+PL F+PYAFSTAVFLINR+PS S +++SP+E LFG TPD     VFGC CY
Sbjct: 717 LTLISQSSLPLNFWPYAFSTAVFLINRLPSVSRQLVSPWECLFGSTPDYKSFRVFGCTCY 776

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYN 95
           PLL+PY+KHKL+P++   VFLGY  N K ++CY+
Sbjct: 777 PLLRPYSKHKLQPRSVPCVFLGYACNAKGFLCYD 810

BLAST of Cmc10g0280231 vs. ExPASy TrEMBL
Match: A0A2N9EUP4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6395 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 1   MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACY 60
           ++LI  SS+PL F+PYAFSTAVFLINR+PS S +++SP+E LFG TPD     VFGC CY
Sbjct: 675 LTLISQSSLPLNFWPYAFSTAVFLINRLPSVSRQLVSPWECLFGSTPDYKSFRVFGCTCY 734

Query: 61  PLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYN 95
           PLL+PY+KHKL+P++   VFLGY  N K ++CY+
Sbjct: 735 PLLRPYSKHKLQPRSVPCVFLGYACNAKGFLCYD 768

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAA7051267.11.5e-2552.43unnamed protein product [Microthlaspi erraticum][more]
TKR89925.12.8e-2450.49hypothetical protein D5086_0000238180 [Populus alba][more]
OMO55025.11.8e-2350.49Integrase, catalytic core [Corchorus capsularis][more]
TQD93593.12.4e-2351.46hypothetical protein C1H46_020801 [Malus baccata][more]
PKI52922.12.4e-2350.49hypothetical protein CRG98_026753 [Punica granatum][more]
Match NameE-valueIdentityDescription
Q94HW21.3e-2448.54Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.8e-2453.26Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041461.4e-0533.33Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A2N9H1I55.0e-2757.28Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9I1C15.0e-2757.28Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9HPM65.0e-2757.28Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9G1Z94.2e-2660.64Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9EUP44.2e-2660.64Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..57
e-value: 1.1E-5
score: 26.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 7..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0280231.1Cmc10g0280231.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding