Cmc10g0280051 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0280051
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr10: 17489566 .. 17492241 (+)
RNA-Seq ExpressionCmc10g0280051
SyntenyCmc10g0280051
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTCTTCCCATCAAGAAACTTAAACTAAGTCTAAAAGGAAGGCAAGTGAGAGAAACACAATTCCTCAAGAAGATGATCAAGGTATGTTGTTCTTTAACTAATTTTTAATTTGTAAAGTTATCTAGTTCAAAGATCTTGGCATTTAAGGTTATATACAATGTTATGGTTTATTGTATATTCATTAAACTAAAGTTTACGGGAAGAGCTTTCATTTTTAAGCATGGACAAACATCATCTAAGAAATTTTAATACCTAAATAACTAACTTGAAAATAAATCTTCATTTTTCTCTAAGGTAGATATTCTCTTTTAATCTTTTTTCCTTCATTTATTTTCCATTCTTACCCAGTTTTATCAGTAACTAAACCAAAATGAAAACTTTAAGTTGAAGTATGAAATGTCACAAAGTCTCAAAATCAAAATATCTTTTTCAAAACTCATGAGAACAATAAATTTCCGAATACAAAAAATATGGACAAAAGAATATCACTTTCAATCCTGGGAAACCTTTCTAACCACAGTAAATAGACCAATTTGAACTGTAAAAATGATTAAGAAAATTTTTGTCGCTATAAATTTGATAAGGCATGCGTTTTCTTTAGTTTTTCTCCCTTAGTTGTCTTCTAACCCAAATTCCTAGCTTGTCTTTCAAATAATATACCTACGAAGAATCTTTTTTGTTGGTTCCATTGTTTTTTTTCAACGATATTTTAAAAACAATATACTAACCATTTTTGTCTGTTAAAAGTATTTTTGAGCTATTTTTTTAAAAAAATGTATAGATATTAATACTTTTTTTTTTTTGAATAATTTAGCCAAATTATAAATCCTGACAATCATTTATAAATATCAAACAAAAATGATCGATTGATTTGAAAGAAGCCCAATAATAAGTGTGTGGAAGCCAACGAAGCTTTGGGCTTCAGCATCACTTTCTCTCCTCACAAAGCAACCAAGTTTTGAAAATGAAGCCTTTAGCTTCCTTCTAATTTGGAATGCATTTTCTAATATAACTACATGCATGCATTTATTTATCCAAAGTTATCTTATATTTGTCTAACTACTATCCCTCTCGAGATGGAGAATTGTGATCATGTCAATTGACGTTGAGTTAAGTTTACTTTTGATTCATCCATTAAAGAAATATAAATCGATTAATTTTATTCCTTCAATCAATTAAGTGATTATACAAGTAAATATGATAGTTTAAAATAAATGAATTTCAAGATACTATTCTAATTAGACTTAAGATTAAGTTAAAATGAACATAGTTCAACTTTTATACAATATAAGTTGATCAAGAAGTCTATTGTTTGAAGATTTCTTATCCTCCATGCTACTAGAAAAAAGACTTGGTCAACAAAAGGGGTAGATAACTTTATCCTCCCCTCCATTAAAATCTAACTAAAGAGATAGAAGGAAATTAGTAAAGGTTTGAACCATAAATTTTTGTATATATATACATAAACACGAAGAATATATGGACCAAGGCTTACTATGTTTGAAGTGCTAAATATTAAAAATGTATAAAGTATACAATCTAAATATCAGTATTTGATCTCCACATCTGACTAGAACATCTCAACCATTCTACCTAAATATTTGTTTGATAGAAATACAATTTAGTTCTCGATTTTTTTTAATATATGTCTAATTAGTTTCTGAGTTTTTAAAACTGTCTAATAGATCCACAAACTTTTAGAGAGTGTTCGGGGTGCAAAGTGTGTTATTACAATTTTGTTGGTCATAATAATCTGTGTGTTATTATATTTGTGTTTGTGGTGCATACTATTATAGTACAATAATATGCAATACACAAATTATTATAACACAAACTAAAATAATCAACACCCCAACACATACAATTATAAATCAGGCTATAATAACACATATTATTATATCCCACATACTATACTAACCTACATGCACCCTAAACGCCCCTAAAGGTTGAAGAATAACAACGAGTGTTATTTGAAATTCTAATCTTAATCCTCGACTAAATTAAATCTTACCTCAAAGAAGGAGTGAGTTATTATTGTTGGTGATATATAATTAAATTTGCCTTCAACAACCAGTTTAAGCTTTTGGTTGAATTGACAGTTTAATATGGTATTAGAGCAAGGAAACAACGAAATCCTAGAAAAAAGTTTAGGAAACACCCAAAATAGAAGCTGTTGTTGTCATCGCCGCCTTGGACACCACATGGAAAAACTACTCAAACAGATTCAGATGCCGTCGATCTATCCAATAAGCCAACCTTCGTCACCATCTGCACAACCTTCTGGCTAGAAACCACCTCAAACGCTGCCGTCTTTTAATCTCATCACCCATCCCATTCTCTTCTACGTATCGTCGCCTGTTCAACCGTCTCACCTTTTCGGTCATCTACCGTCACACGCACTGCCCATCGTCGTCGGACAACAGCCTTCAAAATTGTCAAATATGTACATTAATGCAAATATGTCCTTTGACCCTTTACAACAACTTTTCTTCTATAGTAACAGGGCTGACCAATGCTATAACAGATCAGGGATTGAAGCAGGCGAGTCATCAACACCCTCTGGTTATGGACAACCATATGTTTGTGGTCTCGAGATTAGCCAAACCTACAGGAGAGCTGTTTTTGAAGTTGGTGCATCCTTGACACGGACTGATCTACCAATGTATTCCAAGA

mRNA sequence

TTTATTCTTCCCATCAAGAAACTTAAACTAAGTCTAAAAGGAAGGCAAGTGAGAGAAACACAATTCCTCAAGAAGATGATCAAGGGATTGAAGCAGGCGAGTCATCAACACCCTCTGGTTATGGACAACCATATGTTTGTGGTCTCGAGATTAGCCAAACCTACAGGAGAGCTGTTTTTGAAGTTGGTGCATCCTTGACACGGACTGATCTACCAATGTATTCCAAGA

Coding sequence (CDS)

ATGATCAAGGGATTGAAGCAGGCGAGTCATCAACACCCTCTGGTTATGGACAACCATATGTTTGTGGTCTCGAGATTAGCCAAACCTACAGGAGAGCTGTTTTTGAAGTTGGTGCATCCTTGA

Protein sequence

MIKGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP
Homology
[Close]
BLAST of Cmc10g0280051 vs. NCBI nr
Match: KAA0036486.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK00002.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 3   KGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           +GLK+ASH+HPLVMDNHMFVVS L KP GELF KLVHP
Sbjct: 104 RGLKRASHRHPLVMDNHMFVVSGLIKPIGELFFKLVHP 141

[Close]
BLAST of Cmc10g0280051 vs. NCBI nr
Match: KAA0051972.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04582.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 4   GLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           GLKQASH+HP VMD+ MFVVS L KPTGELFLKLVHP
Sbjct: 149 GLKQASHRHPPVMDSQMFVVSELTKPTGELFLKLVHP 185

[Close]
BLAST of Cmc10g0280051 vs. NCBI nr
Match: TYK30620.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 6.0e-07
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 3   KGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           +GLKQ SH+HP VMDN MFVVS L KP  ELFLKLVHP
Sbjct: 77  RGLKQTSHRHPSVMDNRMFVVSGLIKPIEELFLKLVHP 114

[Close]
BLAST of Cmc10g0280051 vs. NCBI nr
Match: KAA0038225.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 6.0e-07
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 3   KGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           +GLKQ SH+HP VMDN MFVVS L KP  ELFLKLVHP
Sbjct: 77  RGLKQTSHRHPSVMDNRMFVVSGLIKPIEELFLKLVHP 114

[Close]
BLAST of Cmc10g0280051 vs. NCBI nr
Match: KAA0052210.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK01777.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 8   ASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           ASH+HP VMD+HMF+VSRL KP GELFLKLVHP
Sbjct: 155 ASHRHPPVMDSHMFMVSRLIKPIGELFLKLVHP 187

[Close]
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match: A0A5A7T337 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00470 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 3   KGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           +GLK+ASH+HPLVMDNHMFVVS L KP GELF KLVHP
Sbjct: 104 RGLKRASHRHPLVMDNHMFVVSGLIKPIGELFFKLVHP 141

[Close]
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match: A0A5A7U890 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002190 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 4   GLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           GLKQASH+HP VMD+ MFVVS L KPTGELFLKLVHP
Sbjct: 149 GLKQASHRHPPVMDSQMFVVSELTKPTGELFLKLVHP 185

[Close]
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match: A0A5D3E4W4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00340 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 3   KGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           +GLKQ SH+HP VMDN MFVVS L KP  ELFLKLVHP
Sbjct: 77  RGLKQTSHRHPSVMDNRMFVVSGLIKPIEELFLKLVHP 114

[Close]
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match: A0A5A7TA20 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00640 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 3   KGLKQASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           +GLKQ SH+HP VMDN MFVVS L KP  ELFLKLVHP
Sbjct: 77  RGLKQTSHRHPSVMDNRMFVVSGLIKPIEELFLKLVHP 114

[Close]
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match: A0A5D3BQX0 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00050 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 8   ASHQHPLVMDNHMFVVSRLAKPTGELFLKLVHP 41
           ASH+HP VMD+HMF+VSRL KP GELFLKLVHP
Sbjct: 155 ASHRHPPVMDSHMFMVSRLIKPIGELFLKLVHP 187

The following BLAST results are available for this feature:
BLAST of Cmc10g0280051 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036486.14.9e-0981.58Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >T... [more]
KAA0051972.11.9e-0883.78reverse transcriptase [Cucumis melo var. makuwa] >TYK04582.1 reverse transcripta... [more]
TYK30620.16.0e-0776.32reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0038225.16.0e-0776.32reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0052210.12.3e-0681.82UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK01777.1 UBN2_3 d... [more]
BLAST of Cmc10g0280051 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T3372.4e-0981.58Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A5A7U8909.1e-0983.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold40... [more]
A0A5D3E4W42.9e-0776.32Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84... [more]
A0A5A7TA202.9e-0776.32Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3BQX01.1e-0681.82UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Cmc10g0280051 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0280051.1Cmc10g0280051.1mRNA